COL18A1 728

Name: COL18A1	Sequence: fasta or formatted (1516aa)		NCBI GI: 110611235
Description: alpha 1 type XVIII collagen isoform 1 precursor		Referenced in: Collagen
Other entries for this name: alt prot [1336aa] alpha 1 type XVIII collagen isoform 2 precursor alt prot [1751aa] alpha 1 type XVIII collagen isoform 3 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 111 3 C cysteine 0.8 12 2 D aspartate 4.4 67 2 E glutamate 5.6 85 2 F phenylalanine 3.4 51 2 G glycine 18.1 275 4 H histidine 1.8 27 2 I isoleucine 1.8 27 1 K lysine 2.7 41 1 L leucine 7.5 114 4 M methionine 0.9 14 1 N asparagine 1.5 23 2 P proline 17.4 264 3 Q glutamine 3.7 56 2 R arginine 5.3 80 2 S serine 6.5 99 2 T threonine 4.2 63 3 V valine 4.9 74 2 W tryptophan 1.0 15 1 Y tyrosine 1.2 18 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XVIII collagen isoform 1 precursor [Ho... COL18A1 0.862 alpha 1 type XVIII collagen isoform 3 precursor [Ho... COL18A1 0.860 alpha 1 type XVIII collagen isoform 2 precursor [Ho... COL15A1 0.235 alpha 1 type XV collagen precursor COL5A1 0.165 alpha 1 type V collagen preproprotein COL3A1 0.163 collagen type III alpha 1 preproprotein COL1A1 0.163 alpha 1 type I collagen preproprotein COL4A5 0.162 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.161 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.161 type IV collagen alpha 5 isoform 2 precursor COL22A1 0.160 collagen, type XXII, alpha 1 COL11A1 0.159 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.159 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.159 alpha 1 type XI collagen isoform A preproprotein [Ho... COL2A1 0.158 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.158 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A2 0.157 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL5A2 0.157 alpha 2 type V collagen preproprotein COL11A2 0.156 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL4A1 0.156 alpha 1 type IV collagen preproprotein COL11A2 0.156 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL4A4 0.153 alpha 4 type IV collagen precursor COL5A3 0.153 collagen, type V, alpha 3 preproprotein COL4A3 0.152 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.152 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.152 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.152 alpha 3 type IV collagen isoform 1 precursor LOC100293055 0.150 PREDICTED: similar to COL22A1 protein COL7A1 0.150 alpha 1 type VII collagen precursor COL27A1 0.145 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.