COL18A1 727

Name: COL18A1	Sequence: fasta or formatted (1336aa)		NCBI GI: 110611233
Description: alpha 1 type XVIII collagen isoform 2 precursor		Referenced in: Collagen
Other entries for this name: alt prot [1516aa] alpha 1 type XVIII collagen isoform 1 precursor alt prot [1751aa] alpha 1 type XVIII collagen isoform 3 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 93 2 C cysteine 0.7 9 1 D aspartate 4.6 62 2 E glutamate 5.3 71 2 F phenylalanine 3.6 48 2 G glycine 19.5 260 4 H histidine 1.7 23 2 I isoleucine 1.6 21 1 K lysine 3.0 40 1 L leucine 7.3 98 3 M methionine 1.0 14 1 N asparagine 1.0 13 1 P proline 17.6 235 3 Q glutamine 3.8 51 2 R arginine 6.0 80 4 S serine 6.1 82 2 T threonine 2.9 39 2 V valine 5.1 68 2 W tryptophan 0.9 12 1 Y tyrosine 1.3 17 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XVIII collagen isoform 2 precursor [Ho... COL18A1 0.974 alpha 1 type XVIII collagen isoform 1 precursor [Ho... COL18A1 0.974 alpha 1 type XVIII collagen isoform 3 precursor [Ho... COL15A1 0.267 alpha 1 type XV collagen precursor COL5A1 0.187 alpha 1 type V collagen preproprotein COL3A1 0.185 collagen type III alpha 1 preproprotein COL1A1 0.184 alpha 1 type I collagen preproprotein COL4A5 0.183 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.183 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.182 type IV collagen alpha 5 isoform 2 precursor COL22A1 0.181 collagen, type XXII, alpha 1 COL11A1 0.180 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.180 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.180 alpha 1 type XI collagen isoform A preproprotein [Ho... COL2A1 0.179 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.179 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A2 0.178 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL5A2 0.178 alpha 2 type V collagen preproprotein COL11A2 0.177 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL4A1 0.176 alpha 1 type IV collagen preproprotein COL11A2 0.176 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL4A4 0.173 alpha 4 type IV collagen precursor COL5A3 0.173 collagen, type V, alpha 3 preproprotein COL4A3 0.173 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.173 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.173 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.173 alpha 3 type IV collagen isoform 1 precursor LOC100293055 0.170 PREDICTED: similar to COL22A1 protein COL7A1 0.170 alpha 1 type VII collagen precursor COL27A1 0.165 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.