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Search of human proteins with 21361493
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361493 ring finger protein 141 [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361493 ring finger protein 141 [Homo sapiens] 468 e-132
gi|29789407 ring finger protein 149 [Homo sapiens] 51 7e-07
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 50 2e-06
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 50 2e-06
gi|58331204 ring finger protein 150 [Homo sapiens] 48 6e-06
gi|29788758 ring finger protein 130 [Homo sapiens] 48 6e-06
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 48 8e-06
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens] 48 8e-06
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 48 8e-06
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens] 48 8e-06
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 48 8e-06
gi|37622894 ring finger protein 126 [Homo sapiens] 48 8e-06
gi|150378447 zinc and ring finger 3 [Homo sapiens] 47 1e-05
gi|37595553 ring finger protein 111 [Homo sapiens] 47 1e-05
gi|57165361 ring finger protein 165 [Homo sapiens] 47 1e-05
gi|150170725 zinc and ring finger 4 [Homo sapiens] 47 1e-05
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens] 46 2e-05
gi|109134327 PTD016 protein [Homo sapiens] 46 2e-05
gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens] 46 3e-05
gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens] 46 3e-05
gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens] 46 3e-05
gi|7662486 ring finger protein 44 [Homo sapiens] 46 3e-05
gi|56711322 ring finger protein 43 [Homo sapiens] 45 4e-05
gi|239048909 checkpoint with forkhead and ring finger domains is... 45 5e-05
gi|239048905 checkpoint with forkhead and ring finger domains is... 45 5e-05
gi|239048862 checkpoint with forkhead and ring finger domains is... 45 5e-05
gi|239048792 checkpoint with forkhead and ring finger domains is... 45 5e-05
gi|239048907 checkpoint with forkhead and ring finger domains is... 45 5e-05
gi|21071001 autocrine motility factor receptor [Homo sapiens] 45 5e-05
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ... 45 7e-05
>gi|21361493 ring finger protein 141 [Homo sapiens]
Length = 230
Score = 468 bits (1204), Expect = e-132
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHL 60
MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHL
Sbjct: 1 MGQQISDQTQLVINKLPEKVAKHVTLVRESGSLTYEEFLGRVAELNDVTAKVASGQEKHL 60
Query: 61 LFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQ 120
LFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQ
Sbjct: 61 LFEVQPGSDSSAFWKVVVRVVCTKINKSSGIVEASRIMNLYQFIQLYKDITSQAAGVLAQ 120
Query: 121 SSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDK 180
SSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDK
Sbjct: 121 SSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDK 180
Query: 181 WSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMADEAGQPHRP 230
WSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMADEAGQPHRP
Sbjct: 181 WSDRHRNCPICRLQMTGANESWVVSDAPTEDDMANYILNMADEAGQPHRP 230
>gi|29789407 ring finger protein 149 [Homo sapiens]
Length = 400
Score = 51.2 bits (121), Expect = 7e-07
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 151 DEEECCICMDGRA--DLI--LPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESW---- 202
D E C +C++ D+I LPC H F + CID W HR CP+C+L + A W
Sbjct: 265 DAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGEPG 324
Query: 203 ------VVSDAPTEDDMANYILNMADEAG 225
P D AN L + D+ G
Sbjct: 325 DVQEMPAPESPPGRDPAANLSLALPDDDG 353
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 50.1 bits (118), Expect = 2e-06
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 117 VLAQSSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEECCICMDGRADLI-LPCAHSFCQ 175
+ A++ E+ E + + + + L +E +C IC + + + L CAHSFC
Sbjct: 365 IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCS 424
Query: 176 KCIDKWSDRHRNCPICRLQMTGANESWVVSD 206
CI++W R CPICR + S V+ +
Sbjct: 425 YCINEWMKRKIECPICRKDIKSKTYSLVLDN 455
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 49.7 bits (117), Expect = 2e-06
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 155 CCICM-DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESW 202
C IC + R LIL C H FC++C+ W DR R CP+CR W
Sbjct: 384 CAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLCRSVAVDTLRCW 432
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 48.1 bits (113), Expect = 6e-06
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 150 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 198
+D + C +C++G ILPC H F + C+D W HR CP+C++ + A
Sbjct: 273 SDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKA 325
>gi|29788758 ring finger protein 130 [Homo sapiens]
Length = 419
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 151 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVVSD 206
D + C +C++ ILPC H F + C+D W H CP+C+L + A +V +
Sbjct: 260 DFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMCKLNILKA--LGIVPN 317
Query: 207 APTEDDMA 214
P D++A
Sbjct: 318 LPCTDNVA 325
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 47.8 bits (112), Expect = 8e-06
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 150 TDEEECCICM---DGRADL-ILPCAHSFCQKCIDKWSDRHRNCPICR 192
+++ C +CM + R L +LPC H F KC+DKW +R CPICR
Sbjct: 375 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 421
>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 47.8 bits (112), Expect = 8e-06
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 150 TDEEECCICM---DGRADL-ILPCAHSFCQKCIDKWSDRHRNCPICR 192
+++ C +CM + R L +LPC H F KC+DKW +R CPICR
Sbjct: 375 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 421
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 47.8 bits (112), Expect = 8e-06
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 150 TDEEECCICM---DGRADL-ILPCAHSFCQKCIDKWSDRHRNCPICR 192
+++ C +CM + R L +LPC H F KC+DKW +R CPICR
Sbjct: 408 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 454
>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 47.8 bits (112), Expect = 8e-06
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 150 TDEEECCICM---DGRADL-ILPCAHSFCQKCIDKWSDRHRNCPICR 192
+++ C +CM + R L +LPC H F KC+DKW +R CPICR
Sbjct: 375 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 421
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 47.8 bits (112), Expect = 8e-06
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 150 TDEEECCICM---DGRADL-ILPCAHSFCQKCIDKWSDRHRNCPICR 192
+++ C +CM + R L +LPC H F KC+DKW +R CPICR
Sbjct: 458 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 504
>gi|37622894 ring finger protein 126 [Homo sapiens]
Length = 311
Score = 47.8 bits (112), Expect = 8e-06
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 154 ECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 199
EC +C D G LPC H F CI W ++H +CP+CR +TG N
Sbjct: 228 ECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQN 277
>gi|150378447 zinc and ring finger 3 [Homo sapiens]
Length = 836
Score = 47.4 bits (111), Expect = 1e-05
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 154 ECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICR 192
+C IC+ DG ++PC H F +KC+D W +H CP CR
Sbjct: 192 DCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 234
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 47.4 bits (111), Expect = 1e-05
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 152 EEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 195
EE+C IC+ +G LPC H F Q C+D+W ++ CPICR+ +
Sbjct: 931 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 978
>gi|57165361 ring finger protein 165 [Homo sapiens]
Length = 346
Score = 47.4 bits (111), Expect = 1e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 152 EEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 195
+E+C IC+ DG LPC H F Q C+D+W + CPICR+ +
Sbjct: 291 DEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>gi|150170725 zinc and ring finger 4 [Homo sapiens]
Length = 429
Score = 47.0 bits (110), Expect = 1e-05
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 155 CCICMD----GRADLILPCAHSFCQKCIDKWSDR--HRNCPICRLQMTGANESWVVSDAP 208
C IC+D G ILPC+H++ KCID W + R+CP+C+ + +S+
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAATEDSF------ 362
Query: 209 TEDDMANYILNMADEAGQPHRP 230
D Y D + HRP
Sbjct: 363 ---DSTTYSFRDEDPSLPGHRP 381
>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
Length = 1208
Score = 46.2 bits (108), Expect = 2e-05
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 119 AQSSTSEEPDENSSSVTSCQASLWMGRVKQLTDEEE---CCICMDGRAD---LILPCAHS 172
+Q ++ P +TS + W G +EEE C IC + + +LPCAH
Sbjct: 1109 SQPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENLSVLPCAHK 1168
Query: 173 FCQKCIDKWSDRHRNCPICRLQM 195
F +CI W + CP CRL +
Sbjct: 1169 FHAQCIRPWLMQQGTCPTCRLHV 1191
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 147 KQLTDEEECC-ICM-DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVV 204
+Q +D ++ C IC + + ++L C H FC++C+ W +R + CP+CR ++ W
Sbjct: 366 RQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHINKW-- 423
Query: 205 SDAPTEDDMANY 216
D T + Y
Sbjct: 424 KDGATSSHLQIY 435
>gi|197245452 ring finger protein 24 isoform 2 [Homo sapiens]
Length = 169
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 145 RVKQLTDEEECCICMDG---RADL-ILPCAHSFCQKCIDKWSDRHRNCPICRL 193
+VK+L E C +C++ R +L I PC H+F +KC+ KW + + CP+C +
Sbjct: 89 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 141
>gi|197245450 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 145 RVKQLTDEEECCICMDG---RADL-ILPCAHSFCQKCIDKWSDRHRNCPICRL 193
+VK+L E C +C++ R +L I PC H+F +KC+ KW + + CP+C +
Sbjct: 68 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 120
>gi|6857791 ring finger protein 24 isoform 1 [Homo sapiens]
Length = 148
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 145 RVKQLTDEEECCICMDG---RADL-ILPCAHSFCQKCIDKWSDRHRNCPICRL 193
+VK+L E C +C++ R +L I PC H+F +KC+ KW + + CP+C +
Sbjct: 68 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 120
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 45.8 bits (107), Expect = 3e-05
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 150 TDEEECCICM---DGRADL-ILPCAHSFCQKCIDKWSDRHRNCPICR 192
+++ C +C + R L +LPC H F KC+DKW +R CPICR
Sbjct: 375 SEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICR 421
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 45.4 bits (106), Expect = 4e-05
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 155 CCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 196
C IC++ G+ ++ C H F + C+D W +HR CP+C +T
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNIT 317
>gi|239048909 checkpoint with forkhead and ring finger domains
isoform 5 [Homo sapiens]
Length = 572
Score = 45.1 bits (105), Expect = 5e-05
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 144 GRVKQLTDEEECCICMDGRADLIL--PCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 201
G+ ++ + C IC D D + PC H+FC C W +R CP CR
Sbjct: 201 GKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR--------- 251
Query: 202 WVVSDAPTEDDMANYILNMADEA 224
P E N+ILN EA
Sbjct: 252 -----CPVERICKNHILNNLVEA 269
>gi|239048905 checkpoint with forkhead and ring finger domains
isoform 3 [Homo sapiens]
Length = 652
Score = 45.1 bits (105), Expect = 5e-05
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 144 GRVKQLTDEEECCICMDGRADLIL--PCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 201
G+ ++ + C IC D D + PC H+FC C W +R CP CR
Sbjct: 281 GKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR--------- 331
Query: 202 WVVSDAPTEDDMANYILNMADEA 224
P E N+ILN EA
Sbjct: 332 -----CPVERICKNHILNNLVEA 349
>gi|239048862 checkpoint with forkhead and ring finger domains
isoform 2 [Homo sapiens]
Length = 663
Score = 45.1 bits (105), Expect = 5e-05
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 144 GRVKQLTDEEECCICMDGRADLIL--PCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 201
G+ ++ + C IC D D + PC H+FC C W +R CP CR
Sbjct: 293 GKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR--------- 343
Query: 202 WVVSDAPTEDDMANYILNMADEA 224
P E N+ILN EA
Sbjct: 344 -----CPVERICKNHILNNLVEA 361
>gi|239048792 checkpoint with forkhead and ring finger domains
isoform 1 [Homo sapiens]
Length = 664
Score = 45.1 bits (105), Expect = 5e-05
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 144 GRVKQLTDEEECCICMDGRADLIL--PCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 201
G+ ++ + C IC D D + PC H+FC C W +R CP CR
Sbjct: 293 GKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR--------- 343
Query: 202 WVVSDAPTEDDMANYILNMADEA 224
P E N+ILN EA
Sbjct: 344 -----CPVERICKNHILNNLVEA 361
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 45.1 bits (105), Expect = 5e-05
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 144 GRVKQLTDEEECCICMDGRADLIL--PCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 201
G+ ++ + C IC D D + PC H+FC C W +R CP CR
Sbjct: 252 GKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR--------- 302
Query: 202 WVVSDAPTEDDMANYILNMADEA 224
P E N+ILN EA
Sbjct: 303 -----CPVERICKNHILNNLVEA 320
>gi|21071001 autocrine motility factor receptor [Homo sapiens]
Length = 643
Score = 45.1 bits (105), Expect = 5e-05
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 151 DEEECCICMDG-RADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVVSDAPT 209
+ ++C IC D +A LPC H F C+ W ++ +CP CR+ + A+ + V +
Sbjct: 337 NNDDCAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRVREEHQG 396
Query: 210 EDDMANYILNMADEAGQP 227
E ++ ++ +A G+P
Sbjct: 397 E-NLDENLVPVAAAEGRP 413
>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
sapiens]
Length = 1045
Score = 44.7 bits (104), Expect = 7e-05
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 152 EEECCICMD--GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESWVVSDAPT 209
+ +C IC+D + C H FC +C+ +WS CP+C+ +
Sbjct: 100 DSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDS-----IFHSVRA 154
Query: 210 EDDMANYIL 218
EDD Y+L
Sbjct: 155 EDDFKEYVL 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,300,089
Number of Sequences: 37866
Number of extensions: 329065
Number of successful extensions: 1293
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 328
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.