Guide to the Human Genome
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Name: RNF44 Sequence: fasta or formatted (432aa) NCBI GI: 7662486
Description:

ring finger protein 44

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         28           1
 C cysteine            2.5         11           2
 D aspartate           4.2         18           2
 E glutamate           3.9         17           2
 F phenylalanine       3.0         13           1
 G glycine             5.1         22           2
 H histidine           4.2         18           1
 I isoleucine          1.6          7           1
 K lysine              1.2          5           1
 L leucine            10.9         47           2
 M methionine          3.0         13           2
 N asparagine          1.4          6           1
 P proline            17.6         76          11
 Q glutamine           7.2         31           2
 R arginine            5.8         25           2
 S serine              8.1         35           2
 T threonine           4.9         21           2
 V valine              4.9         21           2
 W tryptophan          0.9          4           1
 Y tyrosine            3.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 44 
RNF38                 0.566   ring finger protein 38 isoform 2 
RNF38                 0.566   ring finger protein 38 isoform 2 
RNF38                 0.566   ring finger protein 38 isoform 3 
RNF38                 0.566   ring finger protein 38 isoform 2 
RNF38                 0.566   ring finger protein 38 isoform 1 
RNF6                  0.058   ring finger protein 6 
RNF6                  0.058   ring finger protein 6 
RNF6                  0.058   ring finger protein 6 
RLIM                  0.054   ring finger protein, LIM domain interacting 
RLIM                  0.054   ring finger protein, LIM domain interacting 
RNF111                0.052   ring finger protein 111 
RNF165                0.052   ring finger protein 165 
RNF13                 0.047   ring finger protein 13 
RNF13                 0.047   ring finger protein 13 
CCNK                  0.046   cyclin K isoform 1 
RNF150                0.046   ring finger protein 150 
RNF167                0.045   ring finger protein 167 
RNF148                0.043   ring finger protein 148 
RNF149                0.042   ring finger protein 149 
FLJ22184              0.042   PREDICTED: hypothetical protein FLJ22184 
RNF43                 0.042   ring finger protein 43 
RNF215                0.041   ring finger protein 215 
RNF128                0.039   ring finger protein 128 isoform 1 
RNF128                0.039   ring finger protein 128 isoform 2 
RNF130                0.039   ring finger protein 130 
LOC100290625          0.039   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.039   PREDICTED: hypothetical protein XP_002342853 
RNF11                 0.039   ring finger protein 11 
RNF133                0.039   ring finger protein 133 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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