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Search of human proteins with 21071054
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21071054 helicase-like transcription factor [Homo sapiens]
(1009 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21071052 helicase-like transcription factor [Homo sapiens] 2036 0.0
gi|21071054 helicase-like transcription factor [Homo sapiens] 2036 0.0
gi|40807471 transcription termination factor, RNA polymerase II ... 257 3e-68
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 150 4e-36
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 145 2e-34
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 145 2e-34
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 144 4e-34
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho... 111 4e-24
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom... 111 4e-24
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 99 3e-20
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 98 3e-20
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 98 3e-20
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 98 3e-20
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 98 3e-20
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 98 3e-20
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 98 3e-20
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 98 3e-20
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 98 3e-20
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 97 6e-20
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 97 6e-20
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 97 6e-20
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 97 6e-20
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 96 1e-19
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 96 1e-19
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 96 1e-19
gi|38708321 INO80 complex homolog 1 [Homo sapiens] 96 1e-19
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 96 1e-19
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 96 2e-19
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 96 2e-19
gi|6912622 RAD54 homolog B [Homo sapiens] 94 6e-19
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 2036 bits (5276), Expect = 0.0
Identities = 1009/1009 (100%), Positives = 1009/1009 (100%)
Query: 1 MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF 60
MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF
Sbjct: 1 MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF 60
Query: 61 GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA 120
GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA
Sbjct: 61 GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA 120
Query: 121 YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF 180
YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF
Sbjct: 121 YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF 180
Query: 181 NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL 240
NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL
Sbjct: 181 NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL 240
Query: 241 LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK 300
LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
Sbjct: 241 LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK 300
Query: 301 TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC 360
TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC
Sbjct: 301 TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC 360
Query: 361 SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ 420
SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ
Sbjct: 361 SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ 420
Query: 421 SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI 480
SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI
Sbjct: 421 SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI 480
Query: 481 ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT 540
ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT
Sbjct: 481 ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT 540
Query: 541 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL
Sbjct: 541 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
Query: 601 SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660
SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE
Sbjct: 601 SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660
Query: 661 RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720
RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY
Sbjct: 661 RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720
Query: 721 LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780
LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC
Sbjct: 721 LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780
Query: 781 KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH 840
KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH
Sbjct: 781 KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH 840
Query: 841 ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT 900
ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT
Sbjct: 841 ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT 900
Query: 901 EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF 960
EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF
Sbjct: 901 EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF 960
Query: 961 IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
Sbjct: 961 IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 2036 bits (5276), Expect = 0.0
Identities = 1009/1009 (100%), Positives = 1009/1009 (100%)
Query: 1 MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF 60
MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF
Sbjct: 1 MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF 60
Query: 61 GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA 120
GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA
Sbjct: 61 GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA 120
Query: 121 YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF 180
YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF
Sbjct: 121 YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF 180
Query: 181 NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL 240
NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL
Sbjct: 181 NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL 240
Query: 241 LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK 300
LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
Sbjct: 241 LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK 300
Query: 301 TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC 360
TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC
Sbjct: 301 TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC 360
Query: 361 SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ 420
SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ
Sbjct: 361 SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ 420
Query: 421 SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI 480
SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI
Sbjct: 421 SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI 480
Query: 481 ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT 540
ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT
Sbjct: 481 ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT 540
Query: 541 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL
Sbjct: 541 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
Query: 601 SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660
SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE
Sbjct: 601 SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660
Query: 661 RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720
RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY
Sbjct: 661 RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720
Query: 721 LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780
LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC
Sbjct: 721 LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780
Query: 781 KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH 840
KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH
Sbjct: 781 KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH 840
Query: 841 ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT 900
ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT
Sbjct: 841 ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT 900
Query: 901 EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF 960
EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF
Sbjct: 901 EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF 960
Query: 961 IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
Sbjct: 961 IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
>gi|40807471 transcription termination factor, RNA polymerase II [Homo
sapiens]
Length = 1162
Score = 257 bits (657), Expect = 3e-68
Identities = 175/580 (30%), Positives = 288/580 (49%), Gaps = 110/580 (18%)
Query: 452 KKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG 511
KK+ +K SK + TLIICP S++ +W ++ + + S+ L Y+Y+G
Sbjct: 618 KKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSN-KLRVYLYHG 676
Query: 512 PDRIREPALLSKQDIVLTTYNILTHDYGTKGD---------------SPLHSIRWLRVIL 556
P+R +LS DIV+TTY+++ + T +PL I W R+IL
Sbjct: 677 PNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIIL 736
Query: 557 DEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHR 616
DE H ++NP Q + AV L++ RW +TGTPIQN+L D++SLL FL+ PF + W
Sbjct: 737 DEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRS 796
Query: 617 TIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS-KIKGKPVLELPERKVFIQHITLSDEER 675
+ G + G RL L K++ LRRTK G+P++ LP+RK + H+ LS++E
Sbjct: 797 QVDN----GSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEE 852
Query: 676 KIYQSVKNEGRATIGRYFNE-----------------------GTVLAHYAD-------- 704
+Y R+ + Y G+ +++
Sbjct: 853 TVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSS 912
Query: 705 ---VLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECA 761
+L LLRLRQ CCH LL +A+ P EL+ + L+LS
Sbjct: 913 TVHILSQLLRLRQCCCHLSLLKSALD---------PMELKGE-----GLVLSLEEQ---- 954
Query: 762 ICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
L +LT+ +++ +P + L + E R+S
Sbjct: 955 --LSALTL----------------SELRDSEPSSTVSL------NGTFFKMELFEGMRES 990
Query: 822 EKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRL 881
K I++L+ L +++ + + KS++VSQ+T L ++ + LK G + +
Sbjct: 991 TK-----------ISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATI 1039
Query: 882 DGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQ 941
DGS+ K+R++ ++ F ++ P +ML+SL AGGVGLNL+ + +FL+D WNP+ EDQ
Sbjct: 1040 DGSVNPKQRMDLVEAFNHSR--GPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQ 1097
Query: 942 CFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981
DR +R+GQ+++V+I +F+ + +VEE +L++Q KK++LA
Sbjct: 1098 ACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLA 1137
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 33/113 (29%)
Query: 199 VHAAVQMTTEQLKTEFDKLFEDLKE-DDKTHEMEPAEAIETPLLPHQKQALAWMVSRENS 257
VHA ++T+E + +L L+ +T E ++ PLL HQKQALAW++ RE+
Sbjct: 532 VHAVWKITSEAI----GQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQ 587
Query: 258 KELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILT 310
K GGILADDMGLGKTLT IA+ILT
Sbjct: 588 KP----------------------------QGGILADDMGLGKTLTMIALILT 612
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 150 bits (380), Expect = 4e-36
Identities = 160/690 (23%), Positives = 288/690 (41%), Gaps = 98/690 (14%)
Query: 319 PIERVKKNLLKKEYNVND-----DSMKLGGNNTSEKADGLSKDASRCSEQPSISDIKEKS 373
P+ R K+ + YN+++ + + + N E D S + C E + K+ +
Sbjct: 123 PVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVED--LQKNKDSN 180
Query: 374 KFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQSETKGRAKA---- 429
LS + + K + + + + + G ++ Q E +
Sbjct: 181 SIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWEN 240
Query: 430 GSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSN 489
G + ++ D T T M+++G P L+ PLS L N
Sbjct: 241 GINGILAD-EMGLGKTVQCIATIALMIQRGV--------------PGPFLVCGPLSTLPN 285
Query: 490 WIDQFGQHIKSDVHLNFYVYYGPDRIREPAL---------LSKQDIVLTTYNILTHDYGT 540
W+ +F + + +Y+G R+ + L +V+T++ I D
Sbjct: 286 WMAEFKRFTPD---IPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNA 342
Query: 541 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
L W +I+DEGH I+N + + + ++ + +LTGTP+QN+L +LWSLL
Sbjct: 343 -----LQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLL 397
Query: 601 SFLKLKPFIDR---EWWHRTIQRPVTMGD-------EGGLRRLQSLIKNITLRRTKTSKI 650
+FL F D E W T D + L L ++ LRR +
Sbjct: 398 NFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRR-----L 452
Query: 651 KGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLL 710
K LE+P ++ + + LS ++ Y ++ N TI F G
Sbjct: 453 KSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR---TIANMFGSSEKETIELSPTGRPK 509
Query: 711 RLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVP 770
R + S N +D P EL K + + + D E A+ + +P
Sbjct: 510 RRTR-----------KSINYSKIDDFPNELEKLISQ-----IQPEVDRERAVV--EVNIP 551
Query: 771 VITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWT 830
V + + +QN L R + L+E P + + ++ + ++ T
Sbjct: 552 VESE---------VNLKLQNIMM-----LLRKCCNHPYLIEYPIDPVTQEFKIDEELV-T 596
Query: 831 SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
+S K L L +L+K+ + L+ SQ T+ L ++ F F+RLDGSM+ +R
Sbjct: 597 NSGKFLILDRMLPELKKRGHKV--LLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654
Query: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
+++ F NT+ I L+S +AGG+G+NL+AA V + D WNP ++ Q DRCHR+G
Sbjct: 655 EKNMHSF-NTDP-EVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 712
Query: 951 QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q + V++ + + +++++ +++ KR+L
Sbjct: 713 QTKPVVVYRLVTANTIDQKIVERAAAKRKL 742
Score = 35.8 bits (81), Expect = 0.21
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 285 ENVHGGILADDMGLGKTLTAIAVILTNFHDGRPLP 319
EN GILAD+MGLGKT+ IA I G P P
Sbjct: 239 ENGINGILADEMGLGKTVQCIATIALMIQRGVPGP 273
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 145 bits (366), Expect = 2e-34
Identities = 135/520 (25%), Positives = 233/520 (44%), Gaps = 87/520 (16%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS------KQDIVLTTYN 532
LI+ P S + NW+ + + L YYG R+ + ++++TTYN
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Query: 533 ILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNS 592
+ S ++ I DEGH ++N + + + ++ + + R +LTGTP+QN+
Sbjct: 606 CAISSSDDR--SLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663
Query: 593 LKDLWSLLSFLKLKPFIDR-EWWHRTIQRPVTMGDEGGL------RRLQSLIKNITLRRT 645
L +L SLL+F+ F R DE + + +IK LRR
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723
Query: 646 KTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADV 705
K +K +LP +K I+ +S+++ ++Y + N + +I E ++
Sbjct: 724 KEEVLK-----QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-----EM 773
Query: 706 LGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLD 765
++++LR++ H L T E+L++ +
Sbjct: 774 CNVMMQLRKMANHPLLHRQYY---------TAEKLKE---------------------MS 803
Query: 766 SLTVPVITHCAHVFCKPCIC----QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
L + THC P + +V+ + + H LC+ H +N
Sbjct: 804 QLMLKEPTHCE---ANPDLIFEDMEVMTDFELHV---LCKQYRHINNF------------ 845
Query: 822 EKKSDMEWT-SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTR 880
+ DM+ S K L L++L++K + ++ SQFT L ++E+ LK + R
Sbjct: 846 --QLDMDLILDSGKFRVLGCILSELKQKGDRV--VLFSQFTMMLDILEVLLKHHQHRYLR 901
Query: 881 LDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAED 940
LDG +R+ I F NT+ + LLS KAGG+G+NL++A+ V L D NP +
Sbjct: 902 LDGKTQISERIHLIDEF-NTDMDI-FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 959
Query: 941 QCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q DRCHR+GQ +EV++ K I + ++EE+MLKI +K +L
Sbjct: 960 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
Score = 34.7 bits (78), Expect = 0.46
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 288 HG--GILADDMGLGKTLTAIAVILTNFHDGRPLP 319
HG GILAD+MGLGKT+ AIA + + +G P
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGP 547
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 145 bits (366), Expect = 2e-34
Identities = 135/520 (25%), Positives = 233/520 (44%), Gaps = 87/520 (16%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS------KQDIVLTTYN 532
LI+ P S + NW+ + + L YYG R+ + ++++TTYN
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Query: 533 ILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNS 592
+ S ++ I DEGH ++N + + + ++ + + R +LTGTP+QN+
Sbjct: 606 CAISSSDDR--SLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663
Query: 593 LKDLWSLLSFLKLKPFIDR-EWWHRTIQRPVTMGDEGGL------RRLQSLIKNITLRRT 645
L +L SLL+F+ F R DE + + +IK LRR
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723
Query: 646 KTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADV 705
K +K +LP +K I+ +S+++ ++Y + N + +I E ++
Sbjct: 724 KEEVLK-----QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-----EM 773
Query: 706 LGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLD 765
++++LR++ H L T E+L++ +
Sbjct: 774 CNVMMQLRKMANHPLLHRQYY---------TAEKLKE---------------------MS 803
Query: 766 SLTVPVITHCAHVFCKPCIC----QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
L + THC P + +V+ + + H LC+ H +N
Sbjct: 804 QLMLKEPTHCE---ANPDLIFEDMEVMTDFELHV---LCKQYRHINNF------------ 845
Query: 822 EKKSDMEWT-SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTR 880
+ DM+ S K L L++L++K + ++ SQFT L ++E+ LK + R
Sbjct: 846 --QLDMDLILDSGKFRVLGCILSELKQKGDRV--VLFSQFTMMLDILEVLLKHHQHRYLR 901
Query: 881 LDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAED 940
LDG +R+ I F NT+ + LLS KAGG+G+NL++A+ V L D NP +
Sbjct: 902 LDGKTQISERIHLIDEF-NTDMDI-FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 959
Query: 941 QCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q DRCHR+GQ +EV++ K I + ++EE+MLKI +K +L
Sbjct: 960 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
Score = 34.7 bits (78), Expect = 0.46
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 288 HG--GILADDMGLGKTLTAIAVILTNFHDGRPLP 319
HG GILAD+MGLGKT+ AIA + + +G P
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGP 547
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 144 bits (363), Expect = 4e-34
Identities = 135/520 (25%), Positives = 233/520 (44%), Gaps = 89/520 (17%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS------KQDIVLTTYN 532
LI+ P S + NW+ + + L YYG R+ + ++++TTYN
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Query: 533 ILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNS 592
+ S ++ I DEGH ++N + + + ++ + + R +LTGTP+QN+
Sbjct: 606 CAISSSDDR--SLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663
Query: 593 LKDLWSLLSFLKLKPFIDR-EWWHRTIQRPVTMGDEGGL------RRLQSLIKNITLRRT 645
L +L SLL+F+ F R DE + + +IK LRR
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723
Query: 646 KTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADV 705
K +K +LP +K I+ +S+++ ++Y + N + +I L ++
Sbjct: 724 KEEVLK-----QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINN-------LEKNTEM 771
Query: 706 LGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLD 765
++++LR++ H L T E+L++ +
Sbjct: 772 CNVMMQLRKMANHPLLHRQYY---------TAEKLKE---------------------MS 801
Query: 766 SLTVPVITHCAHVFCKPCIC----QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
L + THC P + +V+ + + H LC+ H +N
Sbjct: 802 QLMLKEPTHCE---ANPDLIFEDMEVMTDFELHV---LCKQYRHINNF------------ 843
Query: 822 EKKSDMEWT-SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTR 880
+ DM+ S K L L++L++K + ++ SQFT L ++E+ LK + R
Sbjct: 844 --QLDMDLILDSGKFRVLGCILSELKQKGDRV--VLFSQFTMMLDILEVLLKHHQHRYLR 899
Query: 881 LDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAED 940
LDG +R+ I F NT+ + LLS KAGG+G+NL++A+ V L D NP +
Sbjct: 900 LDGKTQISERIHLIDEF-NTDMDI-FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 957
Query: 941 QCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q DRCHR+GQ +EV++ K I + ++EE+MLKI +K +L
Sbjct: 958 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
Score = 34.7 bits (78), Expect = 0.46
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 288 HG--GILADDMGLGKTLTAIAVILTNFHDGRPLP 319
HG GILAD+MGLGKT+ AIA + + +G P
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGP 547
>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
sapiens]
Length = 1687
Score = 111 bits (277), Expect = 4e-24
Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG--PDRIREPALLSKQDIVLTTYNI 533
R TLII P S+ W+D+ +H++S L VY G D +P L++QDIV+ TY++
Sbjct: 716 RATLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDV 774
Query: 534 LT---------HDYGTKG------------DSPLHSIRWLRVILDEGHAIRNPNAQQTKA 572
L H G SPL ++ W R+ LDE + P + +
Sbjct: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
Query: 573 VLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRR 632
L RW ++GTP+Q L+DL+ L+ FL ++P+ + WW R + RP + +
Sbjct: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNP---QH 891
Query: 633 LQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY---QSVKNEGRATI 689
L S I I R K I +++P + I + S ER Y V +
Sbjct: 892 LYSFIAKILWRSAKKDVI---DQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948
Query: 690 GRYFNEGTVLAHYAD------VLGLLLRLRQICCH 718
R ++ + D +L LLRLRQ CCH
Sbjct: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 983
Score = 94.4 bits (233), Expect = 5e-19
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)
Query: 758 EECAICLDSLTVP-VITHCAHVFCKPCICQVIQ-----NEQPHAKCPLCRNDIHEDNLLE 811
E C IC L + C H FC CI +I+ + + KC +CR +
Sbjct: 1434 EPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493
Query: 812 CPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
E A + E+ ++ + S+K+ A++ L ++ ++P K+LV S + L +I L
Sbjct: 1494 VFTSEKA-NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552
Query: 872 KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSP--TIMLLSLKAGGVGLNLSAASRVFL 929
+ F AQ RV++ Q + P I+LL L G GL + A+ V L
Sbjct: 1553 TDNNMEF-------AQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLL 1605
Query: 930 MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENM 970
++P NPA E Q R HR+GQ + I+ +F++K ++EE M
Sbjct: 1606 VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646
Score = 52.8 bits (125), Expect = 2e-06
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 213 EFDKLFEDLKEDDKTHEMEPAE--------AIETPLLPHQKQALAWMVSRENSKELPP-- 262
+ D+L+ +K+ TH+ E A+ L P+Q++A+ WM+ +E + P
Sbjct: 272 DIDELYHFVKQ---THQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATE 328
Query: 263 -----FWEQ-----RNDLYYNTITNFSEKDRPEN---VHGGILADDMGLGKTLTAIAVIL 309
W + LYYN T ++ P + + GGILAD+MGLGKT+ +A+IL
Sbjct: 329 SALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALIL 388
Query: 310 TNF-----HDGRPLPIERVKKNLLKKEY 332
T+ D LP +V + Y
Sbjct: 389 THTRQDVKQDALTLPEGKVVNYFIPSHY 416
>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
sapiens]
Length = 1659
Score = 111 bits (277), Expect = 4e-24
Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG--PDRIREPALLSKQDIVLTTYNI 533
R TLII P S+ W+D+ +H++S L VY G D +P L++QDIV+ TY++
Sbjct: 716 RATLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDV 774
Query: 534 LT---------HDYGTKG------------DSPLHSIRWLRVILDEGHAIRNPNAQQTKA 572
L H G SPL ++ W R+ LDE + P + +
Sbjct: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
Query: 573 VLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRR 632
L RW ++GTP+Q L+DL+ L+ FL ++P+ + WW R + RP + +
Sbjct: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNP---QH 891
Query: 633 LQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY---QSVKNEGRATI 689
L S I I R K I +++P + I + S ER Y V +
Sbjct: 892 LYSFIAKILWRSAKKDVI---DQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948
Query: 690 GRYFNEGTVLAHYAD------VLGLLLRLRQICCH 718
R ++ + D +L LLRLRQ CCH
Sbjct: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 983
Score = 94.4 bits (233), Expect = 5e-19
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)
Query: 758 EECAICLDSLTVP-VITHCAHVFCKPCICQVIQ-----NEQPHAKCPLCRNDIHEDNLLE 811
E C IC L + C H FC CI +I+ + + KC +CR +
Sbjct: 1434 EPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493
Query: 812 CPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
E A + E+ ++ + S+K+ A++ L ++ ++P K+LV S + L +I L
Sbjct: 1494 VFTSEKA-NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552
Query: 872 KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSP--TIMLLSLKAGGVGLNLSAASRVFL 929
+ F AQ RV++ Q + P I+LL L G GL + A+ V L
Sbjct: 1553 TDNNMEF-------AQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLL 1605
Query: 930 MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENM 970
++P NPA E Q R HR+GQ + I+ +F++K ++EE M
Sbjct: 1606 VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646
Score = 52.8 bits (125), Expect = 2e-06
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 213 EFDKLFEDLKEDDKTHEMEPAE--------AIETPLLPHQKQALAWMVSRENSKELPP-- 262
+ D+L+ +K+ TH+ E A+ L P+Q++A+ WM+ +E + P
Sbjct: 272 DIDELYHFVKQ---THQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATE 328
Query: 263 -----FWEQ-----RNDLYYNTITNFSEKDRPEN---VHGGILADDMGLGKTLTAIAVIL 309
W + LYYN T ++ P + + GGILAD+MGLGKT+ +A+IL
Sbjct: 329 SALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALIL 388
Query: 310 TNF-----HDGRPLPIERVKKNLLKKEY 332
T+ D LP +V + Y
Sbjct: 389 THTRQDVKQDALTLPEGKVVNYFIPSHY 416
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 98.6 bits (244), Expect = 3e-20
Identities = 82/285 (28%), Positives = 134/285 (47%), Gaps = 37/285 (12%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP----DRIREPALLSKQ------DIVL 528
LI+ PLS L++W +F +N VY G + IRE + Q + ++
Sbjct: 537 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 529 TTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTP 588
TTY IL D G SI W + +DE H ++N ++ K ++D +S R ++TGTP
Sbjct: 594 TTYEILLKDKTVLG-----SINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTP 648
Query: 589 IQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS 648
+QNSLK+LWSLL F+ + F E+W + G E G + L +++ LRR K
Sbjct: 649 LQNSLKELWSLLHFIMPEKF---EFW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKD 704
Query: 649 KIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGL 708
K LP + I + +S +++ Y+ + + + T + L +
Sbjct: 705 VEK-----SLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGST-----SGFLNI 754
Query: 709 LLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKM-KLIL 752
++ L++ C H YL+ + +G +E+ LIR KLIL
Sbjct: 755 VMELKKCCNHCYLIKPPEENERENG----QEILLSLIRSSGKLIL 795
Score = 92.4 bits (228), Expect = 2e-18
Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 813 PPEELARDSEKKSDMEWT-SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
PPEE R++ ++ + SS K+ L LT LR++ + L+ SQ L ++ L
Sbjct: 770 PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRV--LIFSQMVRMLDILAEYL 827
Query: 872 KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMD 931
+ F RLDGS+ + R +++ F N + LLS +AGG+G+NL++A V + D
Sbjct: 828 TIKHYPFQRLDGSIKGEIRKQALDHF-NADGSEDFCFLLSTRAGGLGINLASADTVVIFD 886
Query: 932 PAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
WNP + Q R HR+GQK++V I + + K +VEE +++ KK L
Sbjct: 887 SDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVL 935
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 98.2 bits (243), Expect = 3e-20
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 862 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 922 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S +R +Y+ ++ +G + ++
Sbjct: 980 ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058
Score = 87.8 bits (216), Expect = 5e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E GF + RLDG+ +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL +A V + D WNP + Q DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 290 GILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 98.2 bits (243), Expect = 3e-20
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 862 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 922 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S +R +Y+ ++ +G + ++
Sbjct: 980 ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058
Score = 87.8 bits (216), Expect = 5e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E GF + RLDG+ +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL +A V + D WNP + Q DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 290 GILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 98.2 bits (243), Expect = 3e-20
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 862 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 922 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S +R +Y+ ++ +G + ++
Sbjct: 980 ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058
Score = 87.8 bits (216), Expect = 5e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E GF + RLDG+ +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL +A V + D WNP + Q DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 290 GILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 98.2 bits (243), Expect = 3e-20
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 862 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 922 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S +R +Y+ ++ +G + ++
Sbjct: 980 ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058
Score = 87.8 bits (216), Expect = 5e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E GF + RLDG+ +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL +A V + D WNP + Q DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 290 GILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 98.2 bits (243), Expect = 3e-20
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 862 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 922 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S +R +Y+ ++ +G + ++
Sbjct: 980 ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058
Score = 87.8 bits (216), Expect = 5e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E GF + RLDG+ +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL +A V + D WNP + Q DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 290 GILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 98.2 bits (243), Expect = 3e-20
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 862 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 922 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S +R +Y+ ++ +G + ++
Sbjct: 980 ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058
Score = 87.8 bits (216), Expect = 5e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E GF + RLDG+ +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL +A V + D WNP + Q DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 290 GILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 98.2 bits (243), Expect = 3e-20
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 862 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 922 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S +R +Y+ ++ +G + ++
Sbjct: 980 ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058
Score = 87.8 bits (216), Expect = 5e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E GF + RLDG+ +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL +A V + D WNP + Q DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237
Score = 32.0 bits (71), Expect = 3.0
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 290 GILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 98.2 bits (243), Expect = 3e-20
Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 832 SSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK-KR 890
S K+ LM L LR + ++LV SQ L++IE LK F R+DG++ +R
Sbjct: 459 SGKMIFLMDLLKRLRDEGH--QTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLER 516
Query: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
+ I FQ + S + LL+ + GGVGL L+AA+RV + DP+WNPA + Q DR +R+G
Sbjct: 517 EKRINLFQQNKDYS--VFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIG 574
Query: 951 QKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
QK+ V++ + I +VEE + + Q K L G KK + ++ E+ T+ DL
Sbjct: 575 QKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIEDL 633
Score = 71.6 bits (174), Expect = 3e-12
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSK----QDIVLTTYNIL 534
L+I P ++++ W+ +F IK + ++GP + L++ +++TTY +L
Sbjct: 149 LLIMPTNLINTWVKEF---IKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQML 205
Query: 535 THDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLK 594
+++ W VILDE H I+ + + + + R +LTGTPIQN+L+
Sbjct: 206 INNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQ 265
Query: 595 DLWSLLSFL-------KLKPFIDREWWH---RTIQRPVTMGDEG-GLR---RLQSLIKNI 640
+LWSL F LK F E+ + R ++ T G++ G + L ++IK
Sbjct: 266 ELWSLFDFACQGSLLGTLKTF-KMEYENPITRAREKDATPGEKALGFKISENLMAIIKPY 324
Query: 641 TLRRTKTSKIKGK 653
LRRTK K K
Sbjct: 325 FLRRTKEDVQKKK 337
Score = 33.5 bits (75), Expect = 1.0
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 289 GGILADDMGLGKTLTAIAVI 308
GGILADDMGLGKT+ IA +
Sbjct: 117 GGILADDMGLGKTVQIIAFL 136
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 97.4 bits (241), Expect = 6e-20
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 831 SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
+S K+ L L +L++ + L+ SQ T L L+E L+ G+ + R+DG + R
Sbjct: 1048 ASGKLLLLQKMLKNLKEGGHRV--LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR 1105
Query: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
E+I F N LLS +AGG+G+NL+ A V + D WNP + Q F R HR+G
Sbjct: 1106 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1164
Query: 951 QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q ++V+I +F+ + SVEE + ++ KK L
Sbjct: 1165 QNKKVMIYRFVTRASVEERITQVAKKKMML 1194
Score = 72.8 bits (177), Expect = 2e-12
Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 18/199 (9%)
Query: 523 KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
K ++LT+Y ++T D G SI W +I+DE H ++N ++ + + + +
Sbjct: 844 KFHVLLTSYELITIDMAILG-----SIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKL 898
Query: 583 VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
+LTGTP+QN+L++L+ LL+FL + F + E + ++ + E +++L ++ L
Sbjct: 899 LLTGTPLQNNLEELFHLLNFLTPERFHNLEGF---LEEFADIAKEDQIKKLHDMLGPHML 955
Query: 643 RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
RR K K +P + I + LS ++K Y+ + + V
Sbjct: 956 RRLKADVFK-----NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV---- 1006
Query: 703 ADVLGLLLRLRQICCHTYL 721
+L +++ L++ C H YL
Sbjct: 1007 -SLLNVVMDLKKCCNHPYL 1024
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 97.4 bits (241), Expect = 6e-20
Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 23/256 (8%)
Query: 475 PRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDR-----IREPALLSKQDIVLT 529
P +++ P S L NW+++F + + S L + G IR+ + + D+ +T
Sbjct: 232 PGPHMVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVT 288
Query: 530 TYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPI 589
+Y ++ K S W +++DE H I+N ++ ++ V + +S R +LTGTP+
Sbjct: 289 SYEMVI-----KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPL 343
Query: 590 QNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSK 649
QN+L +LW+LL+FL F + + +GD+ + RL +++K LRR KT
Sbjct: 344 QNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV 403
Query: 650 IKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLL 709
K LP +K ++ LS +R+ Y + + + + G + +L +L
Sbjct: 404 EK-----SLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN---SSGKM--DKMRLLNIL 453
Query: 710 LRLRQICCHTYLLTNA 725
++LR+ C H YL A
Sbjct: 454 MQLRKCCNHPYLFDGA 469
Score = 92.4 bits (228), Expect = 2e-18
Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 3/143 (2%)
Query: 830 TSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKK 889
++S K+ L L L+++ + L+ SQ T L ++E G+ + RLDG ++
Sbjct: 483 SNSGKMVVLDKLLAKLKEQGSRV--LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 890 RVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRL 949
R E+I+ F N S I +LS +AGG+G+NL++A V L D WNP + Q DR HR+
Sbjct: 541 REEAIEAF-NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 599
Query: 950 GQKQEVIITKFIVKDSVEENMLK 972
GQK+ V + + I ++VEE +++
Sbjct: 600 GQKKPVRVFRLITDNTVEERIVE 622
Score = 35.8 bits (81), Expect = 0.21
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 35/104 (33%)
Query: 211 KTEFDKLFEDLKEDDKTH------EMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFW 264
+TE ++ E L E KT E+ P+ PL +Q + L W++S
Sbjct: 148 RTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLIS----------- 196
Query: 265 EQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVI 308
LY N + GILAD+MGLGKTL IA++
Sbjct: 197 -----LYENGVN-------------GILADEMGLGKTLQTIALL 222
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 97.4 bits (241), Expect = 6e-20
Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 23/256 (8%)
Query: 475 PRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDR-----IREPALLSKQDIVLT 529
P +++ P S L NW+++F + + S L + G IR+ + + D+ +T
Sbjct: 232 PGPHMVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVT 288
Query: 530 TYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPI 589
+Y ++ K S W +++DE H I+N ++ ++ V + +S R +LTGTP+
Sbjct: 289 SYEMVI-----KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPL 343
Query: 590 QNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSK 649
QN+L +LW+LL+FL F + + +GD+ + RL +++K LRR KT
Sbjct: 344 QNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV 403
Query: 650 IKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLL 709
K LP +K ++ LS +R+ Y + + + + G + +L +L
Sbjct: 404 EK-----SLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN---SSGKM--DKMRLLNIL 453
Query: 710 LRLRQICCHTYLLTNA 725
++LR+ C H YL A
Sbjct: 454 MQLRKCCNHPYLFDGA 469
Score = 83.6 bits (205), Expect = 9e-16
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 15/155 (9%)
Query: 830 TSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKK 889
++S K+ L L L+++ + L+ SQ T L ++E G+ + RLDG ++
Sbjct: 483 SNSGKMVVLDKLLAKLKEQGSRV--LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 890 RV------------ESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPA 937
R E+I+ F N S I +LS +AGG+G+NL++A V L D WNP
Sbjct: 541 REDKFLEVEFLGQREAIEAF-NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 599
Query: 938 AEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 972
+ Q DR HR+GQK+ V + + I ++VEE +++
Sbjct: 600 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVE 634
Score = 35.8 bits (81), Expect = 0.21
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 35/104 (33%)
Query: 211 KTEFDKLFEDLKEDDKTH------EMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFW 264
+TE ++ E L E KT E+ P+ PL +Q + L W++S
Sbjct: 148 RTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLIS----------- 196
Query: 265 EQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVI 308
LY N + GILAD+MGLGKTL IA++
Sbjct: 197 -----LYENGVN-------------GILADEMGLGKTLQTIALL 222
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 97.4 bits (241), Expect = 6e-20
Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 831 SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
SS K+ L L LR + + L+ SQ T L L+E L+ G+ + R+DG + R
Sbjct: 1022 SSGKLMLLQKMLKKLRDEGHRV--LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR 1079
Query: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
E+I F N LLS +AGG+G+NL+ A V + D WNP + Q F R HR+G
Sbjct: 1080 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1138
Query: 951 QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q ++V+I +F+ + SVEE + ++ +K L
Sbjct: 1139 QNKKVMIYRFVTRASVEERITQVAKRKMML 1168
Score = 74.7 bits (182), Expect = 4e-13
Identities = 50/199 (25%), Positives = 101/199 (50%), Gaps = 18/199 (9%)
Query: 523 KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
K ++LT+Y ++T D G SI W +++DE H ++N ++ + + + + +
Sbjct: 818 KFHVLLTSYELITIDQAILG-----SIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKL 872
Query: 583 VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
+LTGTP+QN+L++L+ LL+FL + F + E + ++ + E +++L L+ L
Sbjct: 873 LLTGTPLQNNLEELFHLLNFLTPERFNNLEGF---LEEFADISKEDQIKKLHDLLGPHML 929
Query: 643 RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
RR K K +P + I + LS ++K Y+ + + ++G +
Sbjct: 930 RRLKADVFK-----NMPAKTELIVRVELSQMQKKYYKFILTRNFEALN---SKGG--GNQ 979
Query: 703 ADVLGLLLRLRQICCHTYL 721
+L +++ L++ C H YL
Sbjct: 980 VSLLNIMMDLKKCCNHPYL 998
Score = 32.0 bits (71), Expect = 3.0
Identities = 46/234 (19%), Positives = 96/234 (41%), Gaps = 21/234 (8%)
Query: 205 MTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRENSKE--LPP 262
MT ++L E+L +DD M + TP+ Q + + K PP
Sbjct: 1184 MTKQELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPP 1243
Query: 263 F----WEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGRPL 318
E + ++Y+ DR ++ +M + +A + DG
Sbjct: 1244 GDNKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDG--- 1300
Query: 319 PIERVKKNLLKKEYNVNDDSM-KLGGNNTSEKADGLSKD---ASRCSEQPSISDIKEKSK 374
+E V++ ++K+E NV+ D KL ++ ++ + L+++ R +Q + +D ++ +
Sbjct: 1301 -VEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQ 1359
Query: 375 FRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQSETKGRAK 428
ELS ++ +Y S+ E+ + E P+ G+ ++ + R K
Sbjct: 1360 EWQDELSDNQS-------EYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDK 1406
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 96.3 bits (238), Expect = 1e-19
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 831 SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
SS K+ L L L+++ + L+ SQ T L L+E L G+ + R+DG + R
Sbjct: 1058 SSGKLMLLQKMLRKLKEQGHRV--LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALR 1115
Query: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
E+I F N LLS +AGG+G+NL+ A V + D WNP + Q F R HR+G
Sbjct: 1116 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1174
Query: 951 QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q +V+I +F+ + SVEE + ++ +K L
Sbjct: 1175 QANKVMIYRFVTRASVEERITQVAKRKMML 1204
Score = 79.0 bits (193), Expect = 2e-14
Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 29/238 (12%)
Query: 523 KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
K ++LT+Y ++T D G SIRW +++DE H ++N ++ + + + + +
Sbjct: 854 KFHVLLTSYELITIDQAALG-----SIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKL 908
Query: 583 VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
+LTGTP+QN+L++L+ LL+FL + F + E + ++ + E +++L L+ L
Sbjct: 909 LLTGTPLQNNLEELFHLLNFLTPERFNNLEGF---LEEFADISKEDQIKKLHDLLGPHML 965
Query: 643 RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
RR K K +P + I + LS ++K Y+ + + V
Sbjct: 966 RRLKADVFK-----NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV---- 1016
Query: 703 ADVLGLLLRLRQICCHTYLLTNAV--SSNGPSG---------NDTPEELRKKLIRKMK 749
+L +++ L++ C H YL A S PSG + L +K++RK+K
Sbjct: 1017 -SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 96.3 bits (238), Expect = 1e-19
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 831 SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
SS K+ L L L+++ + L+ SQ T L L+E L G+ + R+DG + R
Sbjct: 1058 SSGKLMLLQKMLRKLKEQGHRV--LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALR 1115
Query: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
E+I F N LLS +AGG+G+NL+ A V + D WNP + Q F R HR+G
Sbjct: 1116 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1174
Query: 951 QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q +V+I +F+ + SVEE + ++ +K L
Sbjct: 1175 QANKVMIYRFVTRASVEERITQVAKRKMML 1204
Score = 79.0 bits (193), Expect = 2e-14
Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 29/238 (12%)
Query: 523 KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
K ++LT+Y ++T D G SIRW +++DE H ++N ++ + + + + +
Sbjct: 854 KFHVLLTSYELITIDQAALG-----SIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKL 908
Query: 583 VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
+LTGTP+QN+L++L+ LL+FL + F + E + ++ + E +++L L+ L
Sbjct: 909 LLTGTPLQNNLEELFHLLNFLTPERFNNLEGF---LEEFADISKEDQIKKLHDLLGPHML 965
Query: 643 RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
RR K K +P + I + LS ++K Y+ + + V
Sbjct: 966 RRLKADVFK-----NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV---- 1016
Query: 703 ADVLGLLLRLRQICCHTYLLTNAV--SSNGPSG---------NDTPEELRKKLIRKMK 749
+L +++ L++ C H YL A S PSG + L +K++RK+K
Sbjct: 1017 -SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 96.3 bits (238), Expect = 1e-19
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 831 SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
SS K+ L L L+++ + L+ SQ T L L+E L G+ + R+DG + R
Sbjct: 1117 SSGKLMLLQKMLRKLKEQGHRV--LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALR 1174
Query: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
E+I F N LLS +AGG+G+NL+ A V + D WNP + Q F R HR+G
Sbjct: 1175 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1233
Query: 951 QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
Q +V+I +F+ + SVEE + ++ +K L
Sbjct: 1234 QANKVMIYRFVTRASVEERITQVAKRKMML 1263
Score = 79.0 bits (193), Expect = 2e-14
Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 29/238 (12%)
Query: 523 KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
K ++LT+Y ++T D G SIRW +++DE H ++N ++ + + + + +
Sbjct: 913 KFHVLLTSYELITIDQAALG-----SIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKL 967
Query: 583 VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
+LTGTP+QN+L++L+ LL+FL + F + E + ++ + E +++L L+ L
Sbjct: 968 LLTGTPLQNNLEELFHLLNFLTPERFNNLEGF---LEEFADISKEDQIKKLHDLLGPHML 1024
Query: 643 RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
RR K K +P + I + LS ++K Y+ + + V
Sbjct: 1025 RRLKADVFK-----NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV---- 1075
Query: 703 ADVLGLLLRLRQICCHTYLLTNAV--SSNGPSG---------NDTPEELRKKLIRKMK 749
+L +++ L++ C H YL A S PSG + L +K++RK+K
Sbjct: 1076 -SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1132
>gi|38708321 INO80 complex homolog 1 [Homo sapiens]
Length = 1556
Score = 96.3 bits (238), Expect = 1e-19
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 830 TSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKK 889
T S K+ AL LT L+ + + L+ SQ T + L+E + + RLDGS +
Sbjct: 1098 TDSGKLYALDVLLTRLKSQGHRV--LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1155
Query: 890 RVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRL 949
R + + FQN + LLS +AGG+G+NL+AA V D WNP + Q DR HRL
Sbjct: 1156 RRDMVADFQNRN--DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
Query: 950 GQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
GQ ++V + + I K ++EE +L+ +K E+
Sbjct: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEI 1244
Score = 86.3 bits (212), Expect = 1e-16
Identities = 68/264 (25%), Positives = 124/264 (46%), Gaps = 34/264 (12%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRE-------PALLSKQD----IV 527
LII P S L+NW +F + + Y+G R+ L QD +V
Sbjct: 571 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 627
Query: 528 LTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGT 587
+T+Y ++ D ++W ++LDE A+++ ++ + K +L + R +LTGT
Sbjct: 628 ITSYQLVVQDV-----KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 682
Query: 588 PIQNSLKDLWSLLSFLKLKPFID----REWWHRTIQRPV---TMGDEGGLRRLQSLIKNI 640
PIQN++ +LW+LL F+ F EW+ + I+ + DE L RL ++K
Sbjct: 683 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 742
Query: 641 TLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLA 700
LRR IK EL ++ + + L+ ++ +YQ++KN+ + G+
Sbjct: 743 MLRR-----IKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQ 797
Query: 701 HY---ADVLGLLLRLRQICCHTYL 721
+ ++ L+++ R++C H L
Sbjct: 798 AQNTTSSLMNLVMQFRKVCNHPEL 821
Score = 31.2 bits (69), Expect = 5.1
Identities = 13/19 (68%), Positives = 18/19 (94%)
Query: 290 GILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ +IA++
Sbjct: 539 GILADEMGLGKTVQSIALL 557
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 96.3 bits (238), Expect = 1e-19
Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 37/258 (14%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQD--------IVLTT 530
LII P SV+ NW + + S YYG + R+ L +Q + +T+
Sbjct: 671 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERK---LKRQGWTKPNAFHVCITS 724
Query: 531 YNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQ 590
Y ++ D+ W +ILDE I+N +Q+ +++L+ S+RR +LTGTP+Q
Sbjct: 725 YKLVLQDH-----QAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQ 779
Query: 591 NSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVT-------MGDEGGLRRLQSLIKNITLR 643
NSL +LWSL+ FL F + P+T +EG ++RL +++ LR
Sbjct: 780 NSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLR 839
Query: 644 RTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYA 703
R K K ++P++ + LS +R +Y + E H+
Sbjct: 840 RVKVDVEK-----QMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------KETLATGHFM 888
Query: 704 DVLGLLLRLRQICCHTYL 721
V+ +L++LR++C H L
Sbjct: 889 SVINILMQLRKVCNHPNL 906
Score = 90.5 bits (223), Expect = 7e-18
Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 834 KINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVES 893
K+ L L L+ + + L+ +Q T L ++E L G ++ RLDGS RVE
Sbjct: 2044 KLQTLAVLLRQLKAEGHRV--LIFTQMTRMLDVLEQFLTYHGHLYLRLDGST----RVEQ 2097
Query: 894 IQCFQNTEAGSPTIM--LLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQ 951
Q I +LS ++GGVG+NL+ A V D WNP + Q DRCHR+GQ
Sbjct: 2098 RQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 2157
Query: 952 KQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEI 1003
++V I + I + +VEEN+LK N+KR L A KQ I E+
Sbjct: 2158 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIREL 2209
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 95.9 bits (237), Expect = 2e-19
Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 777 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY-----E 831
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 832 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPEL 891
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 892 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR-- 949
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S ++ +Y+ ++ +G + ++
Sbjct: 950 ---LKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1006
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1007 NTIMQLRKICNHPYMFQHIEES 1028
Score = 88.6 bits (218), Expect = 3e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E F++ RLDG+ +
Sbjct: 1046 YRASGKFELLDRILPKLRATNHRV--LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL AA V + D WNP + Q DR HR
Sbjct: 1104 DRAALLKKF-NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHR 1162
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1163 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1207
Score = 35.4 bits (80), Expect = 0.27
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 29/80 (36%)
Query: 229 EMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVH 288
E + A I L +Q Q L WMVS LY N +
Sbjct: 713 EKQSALLINGTLKHYQLQGLEWMVS----------------LYNNNLN------------ 744
Query: 289 GGILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 745 -GILADEMGLGKTIQTIALI 763
Score = 30.8 bits (68), Expect = 6.7
Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 261 PPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMG--LGKTLTAIAVILTNFHD---- 314
PP ++ + +T+ N+ ++ E V + G G+ L+ + + L + +
Sbjct: 1380 PPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEY 1439
Query: 315 ----GRPLPIERVKKNLLKKEY----NVNDDSMKLGGNNTSEKADGLSKDASRCSEQPSI 366
+P+ +++K+ + +Y ++ D M L N + +G
Sbjct: 1440 YELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEG-------------- 1485
Query: 367 SDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQK----MKGKLKNVQSE 422
S I E S S S+R K K ES++ EE E E + +K K+K + +
Sbjct: 1486 SQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKD 1545
Query: 423 TKGRAKAGSSK 433
KGR K K
Sbjct: 1546 DKGRDKGKGKK 1556
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 95.9 bits (237), Expect = 2e-19
Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 22/262 (8%)
Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
LII PLS LSNW +F + S V +++ R P L S K +++LTTY +
Sbjct: 777 LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY-----E 831
Query: 538 YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
Y K L IRW +I+DEGH ++N + + T+ + + RR +LTGTP+QN L +L
Sbjct: 832 YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPEL 891
Query: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
W+LL+FL F + + P M E +RRL +++ LRR
Sbjct: 892 WALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR-- 949
Query: 647 TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
+K + +LPE+ ++ +S ++ +Y+ ++ +G + ++
Sbjct: 950 ---LKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1006
Query: 707 GLLLRLRQICCHTYLLTNAVSS 728
+++LR+IC H Y+ + S
Sbjct: 1007 NTIMQLRKICNHPYMFQHIEES 1028
Score = 88.6 bits (218), Expect = 3e-17
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 829 WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
+ +S K L L LR N + L+ Q T+ ++++E F++ RLDG+ +
Sbjct: 1046 YRASGKFELLDRILPKLRATNHRV--LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103
Query: 889 KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
R ++ F N I LLS +AGG+GLNL AA V + D WNP + Q DR HR
Sbjct: 1104 DRAALLKKF-NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHR 1162
Query: 949 LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
+GQ+ EV + + +SVEE +L K+ ++ + AG F K
Sbjct: 1163 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1207
Score = 35.4 bits (80), Expect = 0.27
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 29/80 (36%)
Query: 229 EMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVH 288
E + A I L +Q Q L WMVS LY N +
Sbjct: 713 EKQSALLINGTLKHYQLQGLEWMVS----------------LYNNNLN------------ 744
Query: 289 GGILADDMGLGKTLTAIAVI 308
GILAD+MGLGKT+ IA+I
Sbjct: 745 -GILADEMGLGKTIQTIALI 763
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 94.0 bits (232), Expect = 6e-19
Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 3/178 (1%)
Query: 832 SSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRV 891
S K+ L L + + P K ++VS +T L++++ K G+ +TRLDG +R
Sbjct: 641 SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700
Query: 892 ESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQ 951
+ + F N++ S I LLS KAGGVGLNL S + L D WNPA + Q R R GQ
Sbjct: 701 QIVDGF-NSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQ 759
Query: 952 KQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
K V I + + ++EE + + Q K+ L K E Q + E++ L L
Sbjct: 760 KYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK--TSEHIQFSVEELKNLFTL 815
Score = 67.8 bits (164), Expect = 5e-11
Identities = 65/263 (24%), Positives = 124/263 (47%), Gaps = 28/263 (10%)
Query: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILT 535
+ TLI+ P S+++NW +F + + S+ + + ++ E +++ +Y +L
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGSE-RIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLL 414
Query: 536 HDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKD 595
+ +I++ +I DEGH ++N + T A++ L E+R +LTGTPIQN L++
Sbjct: 415 RSL-----DQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQE 469
Query: 596 LWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEG---------GLRR---LQSLIKNITLR 643
++L+ F+ + + + P+ + E G RR L L LR
Sbjct: 470 FFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILR 529
Query: 644 RTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYA 703
RT+ +I K + E VF + L E +Y+ + N + + R+ +G L +
Sbjct: 530 RTQ--EIINKYLPPKIENVVFCRPGALQIE---LYRKLLN---SQVVRFCLQG--LLENS 579
Query: 704 DVLGLLLRLRQICCHTYLLTNAV 726
L + L+++C H LL N++
Sbjct: 580 PHLICIGALKKLCNHPCLLFNSI 602
Score = 33.5 bits (75), Expect = 1.0
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 8/44 (18%)
Query: 289 GGILADDMGLGKTLTAIAVILT----NFHDGRPLPIERVKKNLL 328
G ILAD+MGLGKTL I++I T + G+P+ +KK L+
Sbjct: 321 GAILADEMGLGKTLQCISLIWTLQCQGPYGGKPV----IKKTLI 360
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,528,385
Number of Sequences: 37866
Number of extensions: 1768570
Number of successful extensions: 5899
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 5302
Number of HSP's gapped (non-prelim): 624
length of query: 1009
length of database: 18,247,518
effective HSP length: 112
effective length of query: 897
effective length of database: 14,006,526
effective search space: 12563853822
effective search space used: 12563853822
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.