Guide to the Human Genome
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Name: SMARCA4 Sequence: fasta or formatted (1614aa) NCBI GI: 192807318
Description:

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform E

Referenced in:

Bromodomain Family
Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [1647aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
alt prot [1617aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
alt prot [1616aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
alt prot [1613aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
alt prot [1679aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
alt prot [1647aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3        101           3
 C cysteine            0.6          9           1
 D aspartate           5.0         81           3
 E glutamate           9.4        151          10
 F phenylalanine       2.0         33           1
 G glycine             7.2        117           2
 H histidine           2.5         40           2
 I isoleucine          4.2         67           2
 K lysine              8.0        129           9
 L leucine             8.6        139           3
 M methionine          3.4         55           2
 N asparagine          3.0         49           3
 P proline             8.7        140           3
 Q glutamine           6.0         97           3
 R arginine            6.6        106           3
 S serine              6.7        108           3
 T threonine           4.2         67           2
 V valine              4.5         73           3
 W tryptophan          0.7         11           1
 Y tyrosine            2.5         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWI/SNF-related matrix-associated actin-dependent r... 
SMARCA4               0.998   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.998   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.996   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.995   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.995   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.989   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA2               0.736   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.734   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA1               0.138   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.135   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA5               0.131   SWI/SNF-related matrix-associated actin-dependent re...
CHD2                  0.123   chromodomain helicase DNA binding protein 2 isoform...
CHD1                  0.117   chromodomain helicase DNA binding protein 1 
CHD3                  0.116   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.116   chromodomain helicase DNA binding protein 3 isoform...
CHD3                  0.116   chromodomain helicase DNA binding protein 3 isoform ...
CHD4                  0.114   chromodomain helicase DNA binding protein 4 
HELLS                 0.110   helicase, lymphoid-specific 
CHD5                  0.110   chromodomain helicase DNA binding protein 5 
CHD7                  0.106   chromodomain helicase DNA binding protein 7 
CHD8                  0.104   chromodomain helicase DNA binding protein 8 
CHD6                  0.103   chromodomain helicase DNA binding protein 6 
CHD1L                 0.103   chromodomain helicase DNA binding protein 1-like [H...
CHD9                  0.102   chromodomain helicase DNA binding protein 9 
SMARCAD1              0.087   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.087   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.087   SWI/SNF-related, matrix-associated actin-dependent ...
SRCAP                 0.077   Snf2-related CBP activator protein 
INO80                 0.072   INO80 complex homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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