Guide to the Human Genome
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Name: RAD54B Sequence: fasta or formatted (910aa) NCBI GI: 6912622
Description:

RAD54 homolog B

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1         28           2
 C cysteine            3.3         30           1
 D aspartate           4.2         38           2
 E glutamate           7.1         65           3
 F phenylalanine       4.5         41           2
 G glycine             6.3         57           3
 H histidine           2.7         25           2
 I isoleucine          7.5         68           2
 K lysine              8.2         75           3
 L leucine            11.0        100           2
 M methionine          1.2         11           1
 N asparagine          4.9         45           2
 P proline             4.9         45           2
 Q glutamine           4.7         43           2
 R arginine            4.2         38           2
 S serine              8.2         75           2
 T threonine           4.9         45           3
 V valine              5.4         49           2
 W tryptophan          1.0          9           1
 Y tyrosine            2.5         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD54 homolog B 
RAD54L                0.251   RAD54-like protein 
RAD54L                0.251   RAD54-like protein 
ERCC6                 0.136   excision repair cross-complementing rodent repair def...
ERCC6L                0.135   excision repair protein ERCC6-like 
SMARCA1               0.131   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.126   SWI/SNF-related matrix-associated actin-dependent re...
C9orf102              0.124   RAD26L hypothetical protein 
SMARCA5               0.119   SWI/SNF-related matrix-associated actin-dependent re...
RAD54L2               0.114   RAD54-like 2 
SMARCA4               0.112   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.112   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.112   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAD1              0.112   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCA4               0.112   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.112   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.112   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.112   SWI/SNF-related matrix-associated actin-dependent r...
BTAF1                 0.111   BTAF1 RNA polymerase II, B-TFIID transcription facto...
CHD7                  0.111   chromodomain helicase DNA binding protein 7 
SMARCAD1              0.111   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.111   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCA2               0.109   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.109   SWI/SNF-related matrix-associated actin-dependent re...
CHD8                  0.109   chromodomain helicase DNA binding protein 8 
CHD2                  0.109   chromodomain helicase DNA binding protein 2 isoform...
CHD6                  0.105   chromodomain helicase DNA binding protein 6 
CHD1                  0.105   chromodomain helicase DNA binding protein 1 
CHD1L                 0.105   chromodomain helicase DNA binding protein 1-like [H...
CHD4                  0.105   chromodomain helicase DNA binding protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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