Guide to the Human Genome
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Name: C6orf25 Sequence: fasta or formatted (197aa) NCBI GI: 19913381
Description:

G6B protein isoform G6b-E precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [237aa] G6B protein isoform G6b-A precursor
alt prot [241aa] G6B protein isoform G6b-B precursor
alt prot [217aa] G6B protein isoform G6b-C precursor
alt prot [193aa] G6B protein isoform G6b-D precursor
alt prot [222aa] G6B protein isoform G6b-G precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         15           1
 C cysteine            2.0          4           1
 D aspartate           6.1         12           1
 E glutamate           4.1          8           3
 F phenylalanine       2.5          5           2
 G glycine             8.6         17           2
 H histidine           2.5          5           1
 I isoleucine          2.5          5           1
 K lysine              3.6          7           1
 L leucine            13.7         27           3
 M methionine          0.5          1           1
 N asparagine          1.0          2           1
 P proline            10.7         21           2
 Q glutamine           2.5          5           1
 R arginine            8.6         17           2
 S serine              9.1         18           3
 T threonine           4.6          9           1
 V valine              6.6         13           3
 W tryptophan          1.5          3           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G6B protein isoform G6b-E precursor 
C6orf25               0.968   G6B protein isoform G6b-C precursor 
C6orf25               0.945   G6B protein isoform G6b-B precursor 
C6orf25               0.689   G6B protein isoform G6b-D precursor 
C6orf25               0.687   G6B protein isoform G6b-G precursor 
C6orf25               0.687   G6B protein isoform G6b-A precursor 
RNF43                 0.026   ring finger protein 43 
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.018   chromodomain helicase DNA binding protein 3 isoform...
SIPA1L3               0.018   signal-induced proliferation-associated 1 like 3 [Ho...
CRIM1                 0.016   cysteine-rich motor neuron 1 
PPP1R13L              0.016   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.016   protein phosphatase 1, regulatory subunit 13 like [H...
NCAN                  0.013   chondroitin sulfate proteoglycan 3 
ISLR2                 0.013   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.013   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.013   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.013   immunoglobulin superfamily containing leucine-rich ...
LOC285141             0.013   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.013   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.013   PREDICTED: hypothetical protein LOC285141 
TTBK2                 0.013   tau tubulin kinase 2 
SPATA21               0.013   spermatogenesis associated 21 
RNPC3                 0.011   RNA-binding region (RNP1, RRM) containing 3 
ALPK1                 0.011   alpha-kinase 1 
ALPK1                 0.011   alpha-kinase 1 
CD300LG               0.011   CD300 molecule-like family member g 
SLC9A5                0.011   solute carrier family 9 (sodium/hydrogen exchanger), ...
LOC100290359          0.008   PREDICTED: hypothetical protein XP_002346414 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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