Guide to the Human Genome
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Name: C6orf25 Sequence: fasta or formatted (217aa) NCBI GI: 19913377
Description:

G6B protein isoform G6b-C precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [237aa] G6B protein isoform G6b-A precursor
alt prot [241aa] G6B protein isoform G6b-B precursor
alt prot [193aa] G6B protein isoform G6b-D precursor
alt prot [197aa] G6B protein isoform G6b-E precursor
alt prot [222aa] G6B protein isoform G6b-G precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         16           1
 C cysteine            2.8          6           1
 D aspartate           6.5         14           1
 E glutamate           3.7          8           3
 F phenylalanine       2.8          6           2
 G glycine             8.3         18           2
 H histidine           3.2          7           1
 I isoleucine          2.8          6           1
 K lysine              3.2          7           1
 L leucine            13.8         30           3
 M methionine          0.5          1           1
 N asparagine          1.4          3           1
 P proline            11.1         24           2
 Q glutamine           2.3          5           1
 R arginine            8.8         19           2
 S serine              8.8         19           3
 T threonine           4.1          9           1
 V valine              6.0         13           3
 W tryptophan          1.4          3           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G6B protein isoform G6b-C precursor 
C6orf25               0.864   G6B protein isoform G6b-E precursor 
C6orf25               0.857   G6B protein isoform G6b-B precursor 
C6orf25               0.617   G6B protein isoform G6b-G precursor 
C6orf25               0.617   G6B protein isoform G6b-A precursor 
C6orf25               0.617   G6B protein isoform G6b-D precursor 
RNF43                 0.019   ring finger protein 43 
SIPA1L3               0.016   signal-induced proliferation-associated 1 like 3 [Ho...
SVEP1                 0.012   polydom 
NCAN                  0.012   chondroitin sulfate proteoglycan 3 
USP8                  0.012   ubiquitin specific peptidase 8 
USP8                  0.012   ubiquitin specific peptidase 8 
USP8                  0.012   ubiquitin specific peptidase 8 
EPB41L3               0.012   erythrocyte membrane protein band 4.1-like 3 
LOC285141             0.012   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.012   PREDICTED: hypothetical protein LOC285141 
LOC285141             0.012   PREDICTED: hypothetical protein LOC285141 
SIPA1                 0.012   signal-induced proliferation-associated protein 1 [...
SIPA1                 0.012   signal-induced proliferation-associated protein 1 [...
SLC9A5                0.009   solute carrier family 9 (sodium/hydrogen exchanger), ...
MGRN1                 0.009   mahogunin, ring finger 1 isoform 4 
MGRN1                 0.009   mahogunin, ring finger 1 isoform 3 
MGRN1                 0.009   mahogunin, ring finger 1 isoform 2 
MGRN1                 0.009   mahogunin, ring finger 1 isoform 1 
CRKRS                 0.009   Cdc2-related kinase, arginine/serine-rich isoform 1...
ALPK1                 0.009   alpha-kinase 1 
ALPK1                 0.009   alpha-kinase 1 
PPP1R13L              0.009   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.009   protein phosphatase 1, regulatory subunit 13 like [H...
LRRC16A               0.007   leucine rich repeat containing 16A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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