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Search of human proteins with 18959212
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18959212 GS homeobox 2 [Homo sapiens]
(304 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18959212 GS homeobox 2 [Homo sapiens] 632 0.0
gi|33457326 GS homeobox 1 [Homo sapiens] 213 2e-55
gi|10140847 homeobox A2 [Homo sapiens] 100 2e-21
gi|89257348 homeo box HB9 [Homo sapiens] 97 2e-20
gi|24497538 homeobox C4 [Homo sapiens] 95 7e-20
gi|24497540 homeobox C4 [Homo sapiens] 95 7e-20
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 92 4e-19
gi|24497517 homeobox A5 [Homo sapiens] 91 2e-18
gi|19923391 homeobox D3 [Homo sapiens] 90 2e-18
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 89 4e-18
gi|84570137 homeobox B3 [Homo sapiens] 89 4e-18
gi|4504465 homeobox B2 [Homo sapiens] 89 4e-18
gi|13273315 homeobox B4 [Homo sapiens] 88 1e-17
gi|24497515 homeobox A3 isoform b [Homo sapiens] 87 1e-17
gi|24497513 homeobox A3 isoform a [Homo sapiens] 87 1e-17
gi|13562112 homeobox A3 isoform a [Homo sapiens] 87 1e-17
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 86 5e-17
gi|4504469 homeobox B5 [Homo sapiens] 85 7e-17
gi|23397672 homeobox D4 [Homo sapiens] 84 1e-16
gi|169636435 caudal type homeobox 2 [Homo sapiens] 83 3e-16
gi|148613882 homeobox A4 [Homo sapiens] 83 3e-16
gi|5031761 homeobox A1 isoform a [Homo sapiens] 83 3e-16
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 82 4e-16
gi|11321638 homeobox C5 [Homo sapiens] 81 1e-15
gi|147901462 brain specific homeobox [Homo sapiens] 80 2e-15
gi|23503237 homeobox B6 [Homo sapiens] 79 4e-15
gi|85068580 homeobox B7 [Homo sapiens] 79 5e-15
gi|24497526 homeobox B1 [Homo sapiens] 78 1e-14
gi|24497556 homeobox A7 [Homo sapiens] 77 1e-14
gi|13489077 homeobox A6 [Homo sapiens] 77 1e-14
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 632 bits (1631), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCV 60
MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCV
Sbjct: 1 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCV 60
Query: 61 CPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCP 120
CPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCP
Sbjct: 61 CPLCVTSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCP 120
Query: 121 RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNV 180
RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNV
Sbjct: 121 RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNV 180
Query: 181 ADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLN 240
ADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLN
Sbjct: 181 ADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLN 240
Query: 241 LSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKE 300
LSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKE
Sbjct: 241 LSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCVGSQVHYARSEDEDSLSPASANDDKE 300
Query: 301 ISPL 304
ISPL
Sbjct: 301 ISPL 304
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 213 bits (542), Expect = 2e-55
Identities = 142/318 (44%), Positives = 176/318 (55%), Gaps = 73/318 (22%)
Query: 1 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPG-CPSRKSGAFC 59
M RSF VDSL++++ PE P P F P +PPP + PG C +RK+G C
Sbjct: 1 MPRSFLVDSLVLREAGEK--KAPEGSPPPLF--PYAVPPPHALHGLSPGACHARKAGLLC 56
Query: 60 VCPLCVT-SHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQF 118
VCPLCVT S LH G ALPLLK+ F P +Q+
Sbjct: 57 VCPLCVTASQLHGPPGPP------------------------ALPLLKASFP--PFGSQY 90
Query: 119 CPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTY 178
C H P H PG A AAAAAAAA T+Y
Sbjct: 91 C----------HAPLGRQH--SAVSPGVAHGPAAAAAAAALYQ--------------TSY 124
Query: 179 NVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATY 238
+ DPR+FHC+++ S ++Q+P+ KRMRTAFTSTQLLELEREF+SNMYLSRLRRIEIATY
Sbjct: 125 PLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATY 183
Query: 239 LNLSEKQVKIWFQNRRVKHKKEGKGTQR------------NSHAGCKCVG-SQVHYARSE 285
LNLSEKQVKIWFQNRRVKHKKEGKG+ ++ GCKC S + +
Sbjct: 184 LNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDD 243
Query: 286 DEDSLSPASA-NDDKEIS 302
DE +SP+S+ DD++++
Sbjct: 244 DELPMSPSSSGKDDRDLT 261
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 100 bits (249), Expect = 2e-21
Identities = 62/144 (43%), Positives = 85/144 (59%), Gaps = 24/144 (16%)
Query: 148 AAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPNGKRMRT 207
AAAAAA AAA A L H + + +AD + GGS +R+RT
Sbjct: 112 AAAAAATAAATGPACLSHKE---------SLEIADG------SGGGS--------RRLRT 148
Query: 208 AFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQ-R 266
A+T+TQLLELE+EF N YL R RR+EIA L+L+E+QVK+WFQNRR+KHK++ + + +
Sbjct: 149 AYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQ 208
Query: 267 NSHAGCKCVGSQVHYARSEDEDSL 290
NS CK + E+E +L
Sbjct: 209 NSEGKCKSLEDSEKVEEDEEEKTL 232
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 97.1 bits (240), Expect = 2e-20
Identities = 96/281 (34%), Positives = 118/281 (41%), Gaps = 97/281 (34%)
Query: 75 SVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGD-----AQFCPRVNHAH--- 126
S+ A + G G G G G SG G +G+ S+ +AP D + PR+ AH
Sbjct: 33 SLAAAASGTGGGGGGGGASG--GTSGSCSPASSEPPAAPADRLRAESPSPPRLLAAHCAL 90
Query: 127 -----------------HHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAA---------- 159
H P HH H PG+AAAAAAAAAAAAA
Sbjct: 91 LPKPGFLGAGGGGGGTGGGHGGPHHHAH------PGAAAAAAAAAAAAAAGGLALGLHPG 144
Query: 160 -----------AAALGHP---------------QHHA------PVCTATTYNVADPRRFH 187
AA GHP QH A V A + ADP +
Sbjct: 145 GAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLG 204
Query: 188 CLTM----------GGSDASQVPN----------GK--RMRTAFTSTQLLELEREFSSNM 225
T G ++P+ GK R RTAFTS QLLELE +F N
Sbjct: 205 AGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNK 264
Query: 226 YLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQR 266
YLSR +R E+AT L L+E QVKIWFQNRR+K K+ K ++
Sbjct: 265 YLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQ 305
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 95.1 bits (235), Expect = 7e-20
Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 10/138 (7%)
Query: 129 HHPPQHHHHHHQPQQ----PGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADP- 183
H P Q HHH + Q P + A+A+ + A A + P H P A+ + P
Sbjct: 81 HGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDH--PSSAASKQPIVYPW 138
Query: 184 -RRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLS 242
++ H T+ + P KR RTA+T Q+LELE+EF N YL+R RRIEIA L LS
Sbjct: 139 MKKIHVSTVNPNYNGGEP--KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS 196
Query: 243 EKQVKIWFQNRRVKHKKE 260
E+Q+KIWFQNRR+K KK+
Sbjct: 197 ERQIKIWFQNRRMKWKKD 214
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 95.1 bits (235), Expect = 7e-20
Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 10/138 (7%)
Query: 129 HHPPQHHHHHHQPQQ----PGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADP- 183
H P Q HHH + Q P + A+A+ + A A + P H P A+ + P
Sbjct: 81 HGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDH--PSSAASKQPIVYPW 138
Query: 184 -RRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLS 242
++ H T+ + P KR RTA+T Q+LELE+EF N YL+R RRIEIA L LS
Sbjct: 139 MKKIHVSTVNPNYNGGEP--KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS 196
Query: 243 EKQVKIWFQNRRVKHKKE 260
E+Q+KIWFQNRR+K KK+
Sbjct: 197 ERQIKIWFQNRRMKWKKD 214
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 92.4 bits (228), Expect = 4e-19
Identities = 64/187 (34%), Positives = 85/187 (45%), Gaps = 44/187 (23%)
Query: 123 NHAHHHHHPPQHHHHHHQPQQ---------------PGSAAA---------------AAA 152
+H HHHH HHHHHHQ QQ P SAA ++
Sbjct: 64 HHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSS 123
Query: 153 AAAAAAAAAALGHPQHHAPVCTATTYN--VADPRRFHCLTMGG--SDASQVPNG------ 202
+ +++LG C Y P + G SD+S G
Sbjct: 124 PPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEV 183
Query: 203 ----KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHK 258
++ RTAFT Q+ ELE EF+ + YL+RLRR EIA L+L+E+QVK+WFQNRR+K K
Sbjct: 184 NSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWK 243
Query: 259 KEGKGTQ 265
+ G Q
Sbjct: 244 RVKGGQQ 250
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 90.5 bits (223), Expect = 2e-18
Identities = 73/228 (32%), Positives = 100/228 (43%), Gaps = 40/228 (17%)
Query: 66 TSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHA 125
++ +HS R G G G V G GSG G+ + S+AP + ++
Sbjct: 37 SASMHSGR--YGYGYNGMDLSV-GRSGSGHFGSGERARSYAASASAAPAEPRYSQPATST 93
Query: 126 HHHHHPP------------QHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHP---QHHA 170
H P HH S A+A A + ++ +G + A
Sbjct: 94 HSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDA 153
Query: 171 PVCTATTYNVADP--------------RRFHCL--TMGGSDASQVPNGKRMRTAFTSTQL 214
P + ++P R+ H +GG P GKR RTA+T Q
Sbjct: 154 PASSEQASAQSEPSPAPPAQPQIYPWMRKLHISHDNIGG------PEGKRARTAYTRYQT 207
Query: 215 LELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 262
LELE+EF N YL+R RRIEIA L LSE+Q+KIWFQNRR+K KK+ K
Sbjct: 208 LELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 255
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 90.1 bits (222), Expect = 2e-18
Identities = 45/78 (57%), Positives = 58/78 (74%), Gaps = 3/78 (3%)
Query: 188 CLTMGGSDASQVPNG---KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEK 244
C T G S + P G KR+RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+
Sbjct: 177 CATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTER 236
Query: 245 QVKIWFQNRRVKHKKEGK 262
Q+KIWFQNRR+K+KK+ K
Sbjct: 237 QIKIWFQNRRMKYKKDQK 254
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 89.4 bits (220), Expect = 4e-18
Identities = 55/133 (41%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 131 PPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHP---QHHAPVCTATTYNVADPRRFH 187
P H HHH P Q A A L P Q P +T + +
Sbjct: 77 PAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQ--- 133
Query: 188 CLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVK 247
GG+ A++ KR RTA+T QLLELE+EF N Y+SR RR+E+A LNL+E+ +K
Sbjct: 134 --WAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 191
Query: 248 IWFQNRRVKHKKE 260
IWFQNRR+K KKE
Sbjct: 192 IWFQNRRMKWKKE 204
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 89.4 bits (220), Expect = 4e-18
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 192 GGSDASQVPNG----KRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVK 247
GG + P G KR RTA+TS QL+ELE+EF N YL R RR+E+A LNLSE+Q+K
Sbjct: 174 GGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIK 233
Query: 248 IWFQNRRVKHKKEGKGTQRNSHAG 271
IWFQNRR+K+KK+ K S +G
Sbjct: 234 IWFQNRRMKYKKDQKAKGLASSSG 257
Score = 31.6 bits (70), Expect = 0.91
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 71 SSRGSVGAGSGGAGAGVTGAGGSGVAGAAG 100
++ G G G GG G G G+GG G G G
Sbjct: 149 TAEGCGGGGGGGGGGGSGGSGGGGGGGGGG 178
Score = 30.0 bits (66), Expect = 2.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 74 GSVGAGSGGAGAGVTGAGGSGVAGAAGALP 103
G G G GG G+G +G GG G G + P
Sbjct: 154 GGGGGGGGGGGSGGSGGGGGGGGGGDKSPP 183
Score = 28.5 bits (62), Expect = 7.7
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 66 TSHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAG 100
TS L ++ G GG G G G GGSG +G G
Sbjct: 139 TSKLKNNSPGTAEGCGGGGGG-GGGGGSGGSGGGG 172
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 89.4 bits (220), Expect = 4e-18
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 22/119 (18%)
Query: 142 QQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPN 201
++P +A + + AA+A A+ +G P + A GG A
Sbjct: 105 KKPSQSATSPSPAASAVPASGVGSPADGLGLPEA----------------GGGGA----- 143
Query: 202 GKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260
+R+RTA+T+TQLLELE+EF N YL R RR+EIA L+L+E+QVK+WFQNRR+KHK++
Sbjct: 144 -RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 87.8 bits (216), Expect = 1e-17
Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 6/122 (4%)
Query: 143 QPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADP--RRFHCLTMGGSDASQVP 200
+PG A +++ A +P H +P +A V P R+ H T+ + A P
Sbjct: 105 EPGQRCEAVSSSPPPPPCAQ--NPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEP 162
Query: 201 NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260
KR RTA+T Q+LELE+EF N YL+R RR+EIA L LSE+Q+KIWFQNRR+K KK+
Sbjct: 163 --KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKD 220
Query: 261 GK 262
K
Sbjct: 221 HK 222
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 87.4 bits (215), Expect = 1e-17
Identities = 40/63 (63%), Positives = 52/63 (82%)
Query: 201 NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260
+ KR RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+Q+KIWFQNRR+K+KK+
Sbjct: 32 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 91
Query: 261 GKG 263
KG
Sbjct: 92 QKG 94
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 87.4 bits (215), Expect = 1e-17
Identities = 40/63 (63%), Positives = 52/63 (82%)
Query: 201 NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260
+ KR RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+Q+KIWFQNRR+K+KK+
Sbjct: 190 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 249
Query: 261 GKG 263
KG
Sbjct: 250 QKG 252
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 87.4 bits (215), Expect = 1e-17
Identities = 40/63 (63%), Positives = 52/63 (82%)
Query: 201 NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260
+ KR RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+Q+KIWFQNRR+K+KK+
Sbjct: 190 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 249
Query: 261 GKG 263
KG
Sbjct: 250 QKG 252
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 85.5 bits (210), Expect = 5e-17
Identities = 71/201 (35%), Positives = 90/201 (44%), Gaps = 41/201 (20%)
Query: 71 SSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAHHHHH 130
++RG+ A GG G G G+G G A A P ++APG PR N
Sbjct: 572 AARGAEEARGGGGGLGARGSGCQGAA-ETDASPGATVDEAAAPG-----PREN------- 618
Query: 131 PPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLT 190
P PG AAA A P TAT A P+R
Sbjct: 619 ---------SPVAPGPPGGAAAPGGAGTT-----------PQGTATA---AKPKRKRT-- 653
Query: 191 MGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWF 250
GSD S+ +R RTAFT QL+ LE +F + YLS R+ +A L+L+E QVKIWF
Sbjct: 654 --GSD-SKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWF 710
Query: 251 QNRRVKHKKEGKGTQRNSHAG 271
QNRR K KK+ G ++ G
Sbjct: 711 QNRRTKWKKQNPGADTSAPTG 731
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 85.1 bits (209), Expect = 7e-17
Identities = 42/63 (66%), Positives = 50/63 (79%)
Query: 200 PNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 259
P+GKR RTA+T Q LELE+EF N YL+R RRIEIA L LSE+Q+KIWFQNRR+K KK
Sbjct: 192 PDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 251
Query: 260 EGK 262
+ K
Sbjct: 252 DNK 254
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 84.3 bits (207), Expect = 1e-16
Identities = 65/175 (37%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 111 SAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHA 170
S PG P H P H+ P +P A A A A A
Sbjct: 65 SGPGPGSALPARGHGQEPGGPGGHYA---APGEPCPAPPAPPPAPLPGARAYSQSDPKQP 121
Query: 171 PVCTATTYN-VADP--RRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYL 227
P TA V P ++ H ++ + P KR RTA+T Q+LELE+EF N YL
Sbjct: 122 PSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEP--KRSRTAYTRQQVLELEKEFHFNRYL 179
Query: 228 SRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE-----GKGTQRNSHAGCKCVGS 277
+R RRIEIA L LSE+Q+KIWFQNRR+K KK+ KG +S + C S
Sbjct: 180 TRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSS 234
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 83.2 bits (204), Expect = 3e-16
Identities = 67/191 (35%), Positives = 85/191 (44%), Gaps = 30/191 (15%)
Query: 80 SGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHH 139
+G A G A + G G P +SS P D H HHHP HHH H
Sbjct: 78 NGYAPGGAAAAANAVAHGLNGGSPAAAMGYSS-PADY---------HPHHHP---HHHPH 124
Query: 140 QPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVAD--PRRFHCLTMGG---- 193
P AAA + A+ +P P TA ++ RR C M
Sbjct: 125 HP---------AAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQ 175
Query: 194 SDASQVPNGKR--MRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQ 251
S SQV + R +T Q LELE+EF + Y++ R+ E+A L LSE+QVKIWFQ
Sbjct: 176 SLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQ 235
Query: 252 NRRVKHKKEGK 262
NRR K +K K
Sbjct: 236 NRRAKERKINK 246
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 83.2 bits (204), Expect = 3e-16
Identities = 66/171 (38%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 100 GALPLLKSQFSSAPGDAQFCPRVNHAHH---HHHPPQHHHHHHQPQQPGSAAAAAAAAAA 156
GA P Q P A+ HA H PP P P AA A
Sbjct: 107 GASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGV 166
Query: 157 AAAAAALGHP---QHHAPVCTATTYNVADP--RRFHCLTMGGSDASQVPNGKRMRTAFTS 211
A +A P +P+ V P ++ H + S P KR RTA+T
Sbjct: 167 PAGGSAPACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEP--KRSRTAYTR 224
Query: 212 TQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 262
Q+LELE+EF N YL+R RRIEIA L LSE+QVKIWFQNRR+K KK+ K
Sbjct: 225 QQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHK 275
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 82.8 bits (203), Expect = 3e-16
Identities = 55/149 (36%), Positives = 73/149 (48%), Gaps = 13/149 (8%)
Query: 126 HHHHHP---------PQHHHHHHQPQQPGSAAAA---AAAAAAAAAAAALGHPQHHAPVC 173
HHHHH PQ+ HH + + A A + + A+ A P
Sbjct: 142 HHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETS-S 200
Query: 174 TATTYNVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRI 233
A T++ +R T + + +RT FT+ QL ELE+EF N YL+R RR+
Sbjct: 201 PAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRV 260
Query: 234 EIATYLNLSEKQVKIWFQNRRVKHKKEGK 262
EIA L L+E QVKIWFQNRR+K KK K
Sbjct: 261 EIAASLQLNETQVKIWFQNRRMKQKKREK 289
Score = 37.0 bits (84), Expect = 0.022
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 110 SSAPGDAQFCP----RVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGH 165
+S GD +F ++ HHHHH HHHHH QP ++ + + ++ + G
Sbjct: 45 NSCGGDDRFLVGRGVQIGSPHHHHH---HHHHHPQPATYQTSGNLGVSYSHSSCGPSYGS 101
Query: 166 PQHHAP 171
AP
Sbjct: 102 QNFSAP 107
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 82.4 bits (202), Expect = 4e-16
Identities = 70/201 (34%), Positives = 89/201 (44%), Gaps = 41/201 (20%)
Query: 71 SSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAHHHHH 130
++RG+ A GG G G G+G G A A P ++APG PR N
Sbjct: 169 AARGAEEARGGGGGLGARGSGCQG-AAETDASPGATVDEAAAPG-----PREN------- 215
Query: 131 PPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLT 190
P G AAA A P TAT A P+R
Sbjct: 216 ---------SPVAQGPPGGAAAPGGAGT-----------TPQGTAT---AAKPKR----K 248
Query: 191 MGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWF 250
GSD S+ +R RTAFT QL+ LE +F + YLS R+ +A L+L+E QVKIWF
Sbjct: 249 RTGSD-SKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWF 307
Query: 251 QNRRVKHKKEGKGTQRNSHAG 271
QNRR K KK+ G ++ G
Sbjct: 308 QNRRTKWKKQNPGADTSAPTG 328
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 81.3 bits (199), Expect = 1e-15
Identities = 40/66 (60%), Positives = 50/66 (75%)
Query: 197 SQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVK 256
S +GKR RT++T Q LELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+K
Sbjct: 150 SHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMK 209
Query: 257 HKKEGK 262
KK+ K
Sbjct: 210 WKKDSK 215
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 80.1 bits (196), Expect = 2e-15
Identities = 55/167 (32%), Positives = 72/167 (43%), Gaps = 39/167 (23%)
Query: 99 AGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAA 158
A +PLL + P P HAHH H HHH + +
Sbjct: 46 ASRVPLLDYGYPLMPTPTLLAP---HAHHPLHKGDHHHPYF------------LTTSGMP 90
Query: 159 AAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELE 218
A HPQH A+ HC ++ RT F+ +QL LE
Sbjct: 91 VPALFPHPQH------------AELPGKHC------------RRRKARTVFSDSQLSGLE 126
Query: 219 REFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQ 265
+ F YLS R+E+AT L+LSE QVK WFQNRR+KHKK+ + +Q
Sbjct: 127 KRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQ 173
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 79.3 bits (194), Expect = 4e-15
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 200 PNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 259
P+G+R R +T Q LELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+K KK
Sbjct: 144 PSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 203
Query: 260 EGK 262
E K
Sbjct: 204 ESK 206
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 79.0 bits (193), Expect = 5e-15
Identities = 80/253 (31%), Positives = 107/253 (42%), Gaps = 54/253 (21%)
Query: 40 PLVMSVSGPGC-PSRKSGAFCVCPLCVTSHLHSSRGSVGAGSGGA-GAGVTGA--GGSGV 95
P SV G P + S AF P R GAGSG + A + G GG G+
Sbjct: 15 PASSSVFATGAFPEQTSCAFASNP---------QRPGYGAGSGASFAASMQGLYPGGGGM 65
Query: 96 AGAAGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAA 155
AG SA G +A + P + H P + + +A
Sbjct: 66 AG------------QSAAGV--------YAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSA 105
Query: 156 AAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLL 215
AA A Q + + + + + + + G+D KR R +T Q L
Sbjct: 106 KAAGAKE----QRDSDLAAESNFRI-----YPWMRSSGTDR------KRGRQTYTRYQTL 150
Query: 216 ELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGTQRNSHAGCKCV 275
ELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+K KKE N AG
Sbjct: 151 ELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE------NKTAGPGTT 204
Query: 276 GSQVHYARSEDED 288
G A E+E+
Sbjct: 205 GQDRAEAEEEEEE 217
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 77.8 bits (190), Expect = 1e-14
Identities = 80/240 (33%), Positives = 98/240 (40%), Gaps = 55/240 (22%)
Query: 22 LPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCVCPLCVTSHLHSSRGSVGAGSG 81
+P P P + P P S P S G + H S S GA G
Sbjct: 74 VPFPSSAPSGYAPAACSPSYGPSQYYPLGQSEGDGGY----------FHPS--SYGAQLG 121
Query: 82 GAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQFCPRVNHAHHHHHPPQHHHHHHQP 141
G G GAGG+G PG +PPQH P
Sbjct: 122 GLSDGY-GAGGAG------------------PGP--------------YPPQH------P 142
Query: 142 QQPGSAAAAAAAAAAAAAAAALGHPQHHAP-VCTATTYNVADPRRFHCLTMGGSDASQ-V 199
A+ A A A + P P TA T++ +R T S+
Sbjct: 143 PYGNEQTASFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKVSEPGLGS 202
Query: 200 PNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 259
P+G +RT FT+ QL ELE+EF N YLSR RR+EIA L L+E QVKIWFQNRR+K KK
Sbjct: 203 PSG--LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKK 260
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 77.4 bits (189), Expect = 1e-14
Identities = 47/105 (44%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 197 SQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVK 256
S P+ KR R +T Q LELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+K
Sbjct: 125 SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 184
Query: 257 HKKEGKGTQRNSHAGCK-CVGSQVHYARSEDEDSLSPASANDDKE 300
KKE K + A + V S A ++ D +D+E
Sbjct: 185 WKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEE 229
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 77.4 bits (189), Expect = 1e-14
Identities = 38/62 (61%), Positives = 47/62 (75%)
Query: 201 NGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKE 260
+G+R R +T Q LELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+K KKE
Sbjct: 154 HGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 213
Query: 261 GK 262
K
Sbjct: 214 NK 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,650,445
Number of Sequences: 37866
Number of extensions: 842248
Number of successful extensions: 17774
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 9180
Number of HSP's gapped (non-prelim): 4898
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.