Guide to the Human Genome
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Name: FOXN1 Sequence: fasta or formatted (648aa) NCBI GI: 18201913
Description:

forkhead box N1

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         46           3
 C cysteine            1.7         11           1
 D aspartate           4.2         27           2
 E glutamate           5.1         33           2
 F phenylalanine       4.0         26           1
 G glycine             9.4         61           3
 H histidine           3.7         24           1
 I isoleucine          2.0         13           1
 K lysine              4.6         30           1
 L leucine            10.5         68           2
 M methionine          2.0         13           1
 N asparagine          1.7         11           1
 P proline            16.5        107           3
 Q glutamine           4.2         27           1
 R arginine            2.5         16           1
 S serine             10.3         67           3
 T threonine           4.0         26           2
 V valine              2.9         19           1
 W tryptophan          0.8          5           1
 Y tyrosine            2.8         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box N1 
FOXN4                 0.196   forkhead box N4 
FOXN3                 0.066   checkpoint suppressor 1 isoform 1 
FOXN3                 0.066   checkpoint suppressor 1 isoform 2 
FOXN2                 0.066   T-cell leukemia virus enhancer factor 
FOXC1                 0.063   forkhead box C1 
FOXI3                 0.053   forkhead box I3 
FOXL2                 0.051   forkhead box L2 
FOXI2                 0.050   forkhead box I2 
FOXI1                 0.050   forkhead box I1 isoform a 
FOXD2                 0.049   forkhead box D2 
FOXL1                 0.048   forkhead box L1 
FOXF2                 0.047   forkhead box F2 
FOXR1                 0.047   forkhead box R1 
FOXE3                 0.047   forkhead box E3 
FOXD4L3               0.047   forkhead box D4-like 3 
FOXD4L6               0.046   forkhead box D4-like 6 
FOXD4L5               0.046   forkhead box D4-like 5 
FOXF1                 0.045   forkhead box F1 
FOXC2                 0.045   forkhead box C2 
FOXD4L2               0.045   forkhead box D4-like 2 
FOXJ1                 0.045   forkhead box J1 
FOXD4L4               0.045   forkhead box D4-like 4 
FOXD1                 0.045   forkhead box D1 
LOC651986             0.045   PREDICTED: similar to forkhead box L2 
LOC651986             0.044   PREDICTED: similar to forkhead box L2 
LOC651986             0.044   PREDICTED: similar to forkhead box L2 
FOXE1                 0.044   forkhead box E1 
FOXK2                 0.044   forkhead box K2 
FOXD4                 0.044   forkhead box D4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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