Guide to the Human Genome
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Name: FOXR1 Sequence: fasta or formatted (292aa) NCBI GI: 42734393
Description:

forkhead box R1

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         20           2
 C cysteine            1.7          5           1
 D aspartate           3.4         10           1
 E glutamate           8.2         24           4
 F phenylalanine       4.8         14           2
 G glycine             3.8         11           2
 H histidine           2.1          6           1
 I isoleucine          1.7          5           1
 K lysine              5.8         17           2
 L leucine            10.3         30           1
 M methionine          2.1          6           1
 N asparagine          3.4         10           1
 P proline             9.9         29           2
 Q glutamine           4.8         14           2
 R arginine            8.6         25           2
 S serine             11.3         33           3
 T threonine           4.1         12           2
 V valine              3.4         10           1
 W tryptophan          2.1          6           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box R1 
FOXR2                 0.523   forkhead box R2 
FOXN4                 0.120   forkhead box N4 
FOXN1                 0.109   forkhead box N1 
FOXF2                 0.078   forkhead box F2 
FOXI2                 0.075   forkhead box I2 
FOXN2                 0.073   T-cell leukemia virus enhancer factor 
FOXF1                 0.073   forkhead box F1 
FOXK1                 0.073   forkhead box K1 
FOXI1                 0.069   forkhead box I1 isoform a 
FOXI1                 0.069   forkhead box I1 isoform b 
FOXE3                 0.069   forkhead box E3 
FOXI3                 0.069   forkhead box I3 
FOXN3                 0.066   checkpoint suppressor 1 isoform 1 
FOXN3                 0.066   checkpoint suppressor 1 isoform 2 
FOXG1                 0.066   forkhead box G1 
FOXC2                 0.064   forkhead box C2 
FOXE1                 0.064   forkhead box E1 
FOXC1                 0.064   forkhead box C1 
FOXK2                 0.064   forkhead box K2 
FOXB2                 0.062   forkhead box B2 
FOXQ1                 0.062   forkhead box Q1 
FOXL1                 0.062   forkhead box L1 
FOXL2                 0.061   forkhead box L2 
FOXM1                 0.061   forkhead box M1 isoform 3 
FOXM1                 0.061   forkhead box M1 isoform 2 
FOXM1                 0.061   forkhead box M1 isoform 1 
LOC651986             0.061   PREDICTED: similar to forkhead box L2 
FOXB1                 0.061   forkhead box B1 
FOXJ3                 0.059   forkhead box J3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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