Guide to the Human Genome
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Name: FOXF2 Sequence: fasta or formatted (444aa) NCBI GI: 4557595
Description:

forkhead box F2

Referenced in:

FOX Family
Lung

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         55           9
 C cysteine            2.5         11           1
 D aspartate           2.3         10           1
 E glutamate           2.5         11           2
 F phenylalanine       3.4         15           2
 G glycine            11.0         49           6
 H histidine           5.6         25           7
 I isoleucine          2.0          9           1
 K lysine              3.2         14           2
 L leucine             5.9         26           2
 M methionine          2.7         12           2
 N asparagine          2.0          9           1
 P proline            11.3         50           3
 Q glutamine           3.4         15           1
 R arginine            4.3         19           3
 S serine             15.8         70           8
 T threonine           2.3         10           2
 V valine              3.2         14           2
 W tryptophan          0.7          3           1
 Y tyrosine            3.8         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box F2 
FOXF1                 0.384   forkhead box F1 
FOXD1                 0.187   forkhead box D1 
FOXD2                 0.173   forkhead box D2 
FOXD3                 0.159   forkhead box D3 
FOXE1                 0.147   forkhead box E1 
FOXL2                 0.146   forkhead box L2 
FOXL1                 0.144   forkhead box L1 
FOXQ1                 0.143   forkhead box Q1 
FOXC1                 0.142   forkhead box C1 
FOXD4L1               0.136   forkhead box D4-like 1 
FOXI3                 0.136   forkhead box I3 
FOXI2                 0.136   forkhead box I2 
FOXA1                 0.135   forkhead box A1 
FOXD4L6               0.135   forkhead box D4-like 6 
FOXD4L3               0.134   forkhead box D4-like 3 
FOXD4L2               0.133   forkhead box D4-like 2 
FOXD4L5               0.133   forkhead box D4-like 5 
FOXD4L4               0.133   forkhead box D4-like 4 
FOXC2                 0.133   forkhead box C2 
FOXA3                 0.131   forkhead box A3 
FOXD4                 0.131   forkhead box D4 
FOXA2                 0.129   forkhead box A2 isoform 2 
FOXA2                 0.129   forkhead box A2 isoform 1 
FOXG1                 0.127   forkhead box G1 
FOXE3                 0.127   forkhead box E3 
FOXS1                 0.126   forkhead box S1 
FOXB1                 0.122   forkhead box B1 
FOXB2                 0.119   forkhead box B2 
FOXI1                 0.113   forkhead box I1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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