Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FOXD2 Sequence: fasta or formatted (495aa) NCBI GI: 134142824
Description:

forkhead box D2

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.6         92           7
 C cysteine            1.8          9           3
 D aspartate           3.0         15           1
 E glutamate           4.2         21           3
 F phenylalanine       3.6         18           1
 G glycine            15.8         78           4
 H histidine           3.2         16           1
 I isoleucine          2.4         12           1
 K lysine              2.2         11           2
 L leucine             7.7         38           3
 M methionine          1.2          6           1
 N asparagine          1.2          6           1
 P proline            14.3         71           3
 Q glutamine           1.6          8           1
 R arginine            4.6         23           3
 S serine              7.7         38           2
 T threonine           2.0         10           1
 V valine              2.0         10           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.2         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box D2 
FOXD1                 0.295   forkhead box D1 
FOXD3                 0.258   forkhead box D3 
FOXD4L1               0.202   forkhead box D4-like 1 
FOXD4L6               0.198   forkhead box D4-like 6 
FOXD4L5               0.197   forkhead box D4-like 5 
FOXD4L2               0.197   forkhead box D4-like 2 
FOXD4L4               0.197   forkhead box D4-like 4 
FOXD4L3               0.196   forkhead box D4-like 3 
FOXE1                 0.187   forkhead box E1 
FOXD4                 0.187   forkhead box D4 
FOXE3                 0.183   forkhead box E3 
FOXC1                 0.164   forkhead box C1 
FOXL2                 0.158   forkhead box L2 
FOXF2                 0.155   forkhead box F2 
FOXA1                 0.148   forkhead box A1 
FOXQ1                 0.146   forkhead box Q1 
FOXB2                 0.144   forkhead box B2 
FOXS1                 0.140   forkhead box S1 
FOXC2                 0.140   forkhead box C2 
FOXB1                 0.134   forkhead box B1 
FOXI2                 0.133   forkhead box I2 
FOXA3                 0.133   forkhead box A3 
FOXA2                 0.131   forkhead box A2 isoform 2 
FOXA2                 0.131   forkhead box A2 isoform 1 
FOXL1                 0.131   forkhead box L1 
FOXF1                 0.127   forkhead box F1 
FOXI3                 0.124   forkhead box I3 
FOXG1                 0.122   forkhead box G1 
FOXI1                 0.118   forkhead box I1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press