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Search of human proteins with 169208152
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo
sapiens]
(347 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 748 0.0
gi|169217537 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 401 e-112
gi|169208142 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 387 e-107
gi|52485606 formin-like 2 [Homo sapiens] 48 1e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 46 4e-05
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens] 42 6e-04
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ... 42 6e-04
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens] 42 6e-04
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ... 42 6e-04
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens] 42 6e-04
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ... 42 6e-04
gi|40353727 synaptopodin isoform A [Homo sapiens] 42 6e-04
gi|11415052 retinoid X receptor, beta [Homo sapiens] 42 8e-04
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 42 8e-04
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 42 0.001
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 42 0.001
gi|145207994 hairy and enhancer of split 7 [Homo sapiens] 41 0.001
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 41 0.002
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 40 0.002
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 40 0.004
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 39 0.005
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 39 0.007
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 39 0.007
gi|24497460 Shaw-related voltage-gated potassium channel protein... 39 0.007
gi|150170670 piccolo isoform 2 [Homo sapiens] 39 0.007
gi|150378539 piccolo isoform 1 [Homo sapiens] 39 0.007
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 39 0.007
gi|7706501 WW domain binding protein 11 [Homo sapiens] 39 0.007
gi|148727264 transcription elongation regulator 1-like [Homo sap... 39 0.007
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 39 0.009
>gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 347
Score = 748 bits (1930), Expect = 0.0
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MPDYSKRMSRKQYESKPQSPGEKVTELPFEGGHSLRFCPSCLVPPVVRFAVGALMGEGVG 60
MPDYSKRMSRKQYESKPQSPGEKVTELPFEGGHSLRFCPSCLVPPVVRFAVGALMGEGVG
Sbjct: 1 MPDYSKRMSRKQYESKPQSPGEKVTELPFEGGHSLRFCPSCLVPPVVRFAVGALMGEGVG 60
Query: 61 AGLRGRWRSCQGPFGSRIAAVPARSGGGCCPPAPKGMSAHGLGWDPQSCGKIFHPSWAPL 120
AGLRGRWRSCQGPFGSRIAAVPARSGGGCCPPAPKGMSAHGLGWDPQSCGKIFHPSWAPL
Sbjct: 61 AGLRGRWRSCQGPFGSRIAAVPARSGGGCCPPAPKGMSAHGLGWDPQSCGKIFHPSWAPL 120
Query: 121 PSVGKGLSLVFWAQPASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPES 180
PSVGKGLSLVFWAQPASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPES
Sbjct: 121 PSVGKGLSLVFWAQPASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPES 180
Query: 181 TSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPA 240
TSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPA
Sbjct: 181 TSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPA 240
Query: 241 FPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQV 300
FPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQV
Sbjct: 241 FPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQV 300
Query: 301 PAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCI 347
PAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCI
Sbjct: 301 PAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGLPAGGCI 347
>gi|169217537 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 205
Score = 401 bits (1030), Expect = e-112
Identities = 185/186 (99%), Positives = 185/186 (99%)
Query: 162 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 221
AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP
Sbjct: 20 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 79
Query: 222 GEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL 281
GEPGSPLPASPHPPLQPPAFPDPPI SPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL
Sbjct: 80 GEPGSPLPASPHPPLQPPAFPDPPIHSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL 139
Query: 282 PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL 341
PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL
Sbjct: 140 PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL 199
Query: 342 PAGGCI 347
PAGGCI
Sbjct: 200 PAGGCI 205
>gi|169208142 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 205
Score = 387 bits (993), Expect = e-107
Identities = 180/184 (97%), Positives = 181/184 (98%)
Query: 162 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 221
AGWQLLPTARSPAQHP ESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP
Sbjct: 20 AGWQLLPTARSPAQHPSESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 79
Query: 222 GEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKL 281
GEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVL+SPLSLPLSK
Sbjct: 80 GEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLYSPLSLPLSKP 139
Query: 282 PPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL 341
P LYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL
Sbjct: 140 PALYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRSGVCRGADRRLWKLQGL 199
Query: 342 PAGG 345
PAGG
Sbjct: 200 PAGG 203
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 47.8 bits (112), Expect = 1e-05
Identities = 36/100 (36%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 193 GPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPA 252
GPL PP PL TPE + G P P PP PP P PP P P
Sbjct: 524 GPLPPPPP----------PLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPP 573
Query: 253 V--SSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSP 290
+ +A + PAP PL+ PL PPL T SP
Sbjct: 574 LPGPAAETVPAP----------PLAPPLPSAPPLPGTSSP 603
Score = 32.0 bits (71), Expect = 0.84
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 219 PEPGEPGSPLPASPHPPLQPPA---FPDPPIRSPDPAVSSAHSFPAPRLAWS 267
P P P P P P PPL PA P PP+ P P+ +P + ++
Sbjct: 557 PPPPPPPPPPPPPPPPPLPGPAAETVPAPPLAPPLPSAPPLPGTSSPTVVFN 608
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 46.2 bits (108), Expect = 4e-05
Identities = 65/203 (32%), Positives = 85/203 (41%), Gaps = 44/203 (21%)
Query: 121 PSVGKGLSLVFWAQPASHSFSGLESRSMCCAWLGSAVPLFG---AGWQLLPTARSPAQHP 177
PS G GL +PAS S S SA PL +G T R+PA HP
Sbjct: 228 PSAGGGLQ-----RPASRSLSS------------SATPLSSPARSGPSARGTPRAPA-HP 269
Query: 178 PESTSVLLNWVIRALGP--LVPPTE------GGLWSDQVSWPLWEDVKT---PEPGEPGS 226
+ L +AL P + PP + G L S ++ P K P P +
Sbjct: 270 SQPKPKGL----QALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAAT 325
Query: 227 PLPAS--PHPPLQPPAFPDPPIRSPDPAVSSAHSFPA--PRLAWSCVLHSPLSLP--LSK 280
PLPA+ P PPL P PP S P++ + S PA P A + P+ P L
Sbjct: 326 PLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQT 385
Query: 281 LPPLYLTHSPLRHQSTQAQVPAP 303
+PP+ + HS L S QA P+P
Sbjct: 386 IPPIQVPHS-LTSPSLQAP-PSP 406
Score = 40.4 bits (93), Expect = 0.002
Identities = 38/123 (30%), Positives = 50/123 (40%), Gaps = 12/123 (9%)
Query: 168 PTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSP 227
P+A P Q PP + L + P PP PL P P +
Sbjct: 718 PSATPPPQAPPPLAAPPLQ--VPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPAS 775
Query: 228 LPASP---HPPLQPPAFPDPPIRS-PDPAVSSAHSFP--APRLAWSCVLHSPLSLPLSKL 281
LP SP PP PPA PP+++ P P S FP AP + + SPL+ P +
Sbjct: 776 LPMSPLAKPPPQAPPALATPPLQALPSPPAS----FPGQAPFSPSASLPMSPLATPPPQA 831
Query: 282 PPL 284
PP+
Sbjct: 832 PPV 834
Score = 36.2 bits (82), Expect = 0.045
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 22/125 (17%)
Query: 168 PTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEP--- 224
P+A P+Q PP + L VPP S S P+ P P
Sbjct: 687 PSATPPSQAPPSLAAPPLQ---------VPP------SPPASPPMSPSATPPPQAPPPLA 731
Query: 225 GSPLPASPHPPLQPPAFPD--PPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLP 282
PL P PP PP P PP R P + +A P + + SPL+ P + P
Sbjct: 732 APPLQVPPSPPASPPMSPSATPPPRV--PPLLAAPPLQVPPSPPASLPMSPLAKPPPQAP 789
Query: 283 PLYLT 287
P T
Sbjct: 790 PALAT 794
Score = 35.8 bits (81), Expect = 0.058
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 177 PPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGS----PLPASP 232
PPE+ S + +A L P GL S +S + TP P P PL A P
Sbjct: 580 PPETPSSIATPPPQAPPALASPPLQGLPSPPLS-----PLATPPPQAPPXLALPPLQAPP 634
Query: 233 HPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSP 290
PP PP P+ +P P AP +L +P S P S PP+ SP
Sbjct: 635 SPPASPPL---SPLATPSP--------QAPNALAVHLLQAPFSPPPS--PPVQAPFSP 679
Score = 32.7 bits (73), Expect = 0.49
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 167 LPTARSPAQHPPESTSVLLNWVIRALGPL---VPPTEGGLWSDQVSWPLWEDVKTPEPGE 223
L + PA PP+S + + A PL + P L S PL + + +
Sbjct: 441 LTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPL-QALSSLASHS 499
Query: 224 PGSPLPASPHPPLQ------PPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLP 277
P +PL + PPL+ PP+ PP P + + S P L +PL+ P
Sbjct: 500 PQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQ---TASAPLTTP 556
Query: 278 LSKLPP 283
+ PP
Sbjct: 557 HLETPP 562
Score = 32.3 bits (72), Expect = 0.64
Identities = 51/168 (30%), Positives = 63/168 (37%), Gaps = 40/168 (23%)
Query: 172 SPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPAS 231
SP+ P S L + ++A L PT S P P P S P S
Sbjct: 397 SPSLQAPPSPLALSS--LQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDS 454
Query: 232 PHPPLQPP-AFP-DPPIR-SPDPAVSSAHS----FPAPRLAWSCVLHSPLSLPLSKL--- 281
P PLQ P + P PP++ S PAVS S P L+ S HSP + PLS L
Sbjct: 455 P--PLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALS-SLASHSPQA-PLSSLIMP 510
Query: 282 ---------------PPLYLTHSPLRH---------QSTQAQVPAPHL 305
PP LT PL + Q+ A + PHL
Sbjct: 511 PLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHL 558
Score = 30.4 bits (67), Expect = 2.4
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 175 QHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHP 234
Q PP S + + +L P PP + S ++ P E P P PL A P P
Sbjct: 524 QTPPASLTTPPLENLPSLAP--PPLQTA--SAPLTTPHLETPPCPAP----CPLQAPPSP 575
Query: 235 -----PLQPPAFPDPPIRSPDPAVSS--AHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLT 287
P P + PP ++P PA++S P+P L+ P + P LPPL
Sbjct: 576 LTTPPPETPSSIATPPPQAP-PALASPPLQGLPSPPLS-PLATPPPQAPPXLALPPLQAP 633
Query: 288 HSP 290
SP
Sbjct: 634 PSP 636
Score = 29.6 bits (65), Expect = 4.2
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 15/132 (11%)
Query: 172 SPAQHP-PESTSVLLNWVIRALGPLVPPTEGGL---WSDQVSWPLWEDVKTPEPGEPGSP 227
SP P P++ + L +++A P PP + +S S P+ P P
Sbjct: 643 SPLATPSPQAPNALAVHLLQA--PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLA 700
Query: 228 LPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLS---------LPL 278
P PP P + P P +P P + P ++ S P+S PL
Sbjct: 701 APPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPL 760
Query: 279 SKLPPLYLTHSP 290
PPL + SP
Sbjct: 761 LAAPPLQVPPSP 772
Score = 29.3 bits (64), Expect = 5.4
Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 21/107 (19%)
Query: 162 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 221
A + P A P Q PP + LL VPP S S L + P P
Sbjct: 817 ASLPMSPLATPPPQAPPVLAAPLLQ---------VPP------SPPASPTLQAPRRPPTP 861
Query: 222 GE------PGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP 262
G P L +P PP P P + PD A S+ + P
Sbjct: 862 GPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTP 908
>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 42.4 bits (98), Expect = 6e-04
Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 221 PGEPGSPLPASPH--PPLQPPAFPDPPIRSP------DPAVSSAHSFPAP 262
PGEP S +PA+P PPLQPP PDP R P D A SS+ S P
Sbjct: 798 PGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPP 847
>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
sapiens]
Length = 218
Score = 42.4 bits (98), Expect = 6e-04
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 202 GLWSDQVSWPLWEDVKTPEPGEPGSPLPASP-HPPLQPPAFPDPPIRSPDP 251
GLWS P K P P +P PLP +P PPL PP P PP+ P P
Sbjct: 20 GLWSPPPPLP---PRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLPPPRP 67
Score = 35.0 bits (79), Expect = 0.099
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPIRSP----------DPAVSSAHSFPAPRLAWSC 268
P P P P P P PPL PP P PP SP P++S + LA S
Sbjct: 45 PNPPRPPLPPPRPPKPPLPPPRPPKPP--SPLGLAQSKVTLFPSISPSSMASLAALASSS 102
Query: 269 VLHS----PLSLPLSK 280
+L S PL P+S+
Sbjct: 103 LLKSTKPNPLEDPVSR 118
>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 42.4 bits (98), Expect = 6e-04
Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 221 PGEPGSPLPASPH--PPLQPPAFPDPPIRSP------DPAVSSAHSFPAP 262
PGEP S +PA+P PPLQPP PDP R P D A SS+ S P
Sbjct: 798 PGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPP 847
>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
sapiens]
Length = 218
Score = 42.4 bits (98), Expect = 6e-04
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 202 GLWSDQVSWPLWEDVKTPEPGEPGSPLPASP-HPPLQPPAFPDPPIRSPDP 251
GLWS P K P P +P PLP +P PPL PP P PP+ P P
Sbjct: 20 GLWSPPPPLP---PRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLPPPRP 67
Score = 35.0 bits (79), Expect = 0.099
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPIRSP----------DPAVSSAHSFPAPRLAWSC 268
P P P P P P PPL PP P PP SP P++S + LA S
Sbjct: 45 PNPPRPPLPPPRPPKPPLPPPRPPKPP--SPLGLAQSKVTLFPSISPSSMASLAALASSS 102
Query: 269 VLHS----PLSLPLSK 280
+L S PL P+S+
Sbjct: 103 LLKSTKPNPLEDPVSR 118
>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 42.4 bits (98), Expect = 6e-04
Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 221 PGEPGSPLPASPH--PPLQPPAFPDPPIRSP------DPAVSSAHSFPAP 262
PGEP S +PA+P PPLQPP PDP R P D A SS+ S P
Sbjct: 798 PGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPP 847
>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
sapiens]
Length = 218
Score = 42.4 bits (98), Expect = 6e-04
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 202 GLWSDQVSWPLWEDVKTPEPGEPGSPLPASP-HPPLQPPAFPDPPIRSPDP 251
GLWS P K P P +P PLP +P PPL PP P PP+ P P
Sbjct: 20 GLWSPPPPLP---PRKPPRPPKPPRPLPPNPPRPPLPPPRPPKPPLPPPRP 67
Score = 35.0 bits (79), Expect = 0.099
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPIRSP----------DPAVSSAHSFPAPRLAWSC 268
P P P P P P PPL PP P PP SP P++S + LA S
Sbjct: 45 PNPPRPPLPPPRPPKPPLPPPRPPKPP--SPLGLAQSKVTLFPSISPSSMASLAALASSS 102
Query: 269 VLHS----PLSLPLSK 280
+L S PL P+S+
Sbjct: 103 LLKSTKPNPLEDPVSR 118
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 42.4 bits (98), Expect = 6e-04
Identities = 43/138 (31%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 177 PPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDV------KTPEPGEPGS--PL 228
PP S S W R++ PL P TE S Q+ L ++ K+ P G+ P
Sbjct: 726 PPMSPS----WSERSVSPLRPETEARPPSRQLQALLARNIINAARRKSASPRSAGAENPR 781
Query: 229 PASPH---PPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLY 285
P SP PP PP P P +RSP PA + + P A +P S LP
Sbjct: 782 PFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFA---------PIPRSPLPA-- 830
Query: 286 LTHSPLRHQSTQAQVPAP 303
P S ++ +PAP
Sbjct: 831 ---GPSSCTSPRSPLPAP 845
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 42.0 bits (97), Expect = 8e-04
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 219 PEPGEPGSPLPASPHPPL------QPPAFPDPPIRSPDPAVSSAHSFP 260
P P PG PLP S P L PP P PP+ SP P +SS+ P
Sbjct: 96 PPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSP 143
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 42.0 bits (97), Expect = 8e-04
Identities = 59/202 (29%), Positives = 70/202 (34%), Gaps = 49/202 (24%)
Query: 116 SWAPLPSVGKGLSLVFWAQPASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQ 175
S A P G+G A P F G A G P F AG T P
Sbjct: 193 SRAAFPQGGRGRGRFPGAVPGGDRFPGP-------AGPGGPPPPFPAG----QTPPRPPL 241
Query: 176 HPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP--------GEPG-S 226
PP GP PP G + ++ P + P P G+P
Sbjct: 242 GPPGPP-----------GPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLG 290
Query: 227 PLPASPHPPLQ---PPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPP 283
PLP P PP+ PP P PP + P P FP PR PL PL+ PP
Sbjct: 291 PLPPGPPPPVPGYGPPPGPPPPQQGPPPPPG---PFP-PRPP------GPLGPPLTLAPP 340
Query: 284 LYLTHSPLRHQSTQAQVPAPHL 305
+L P A PAPH+
Sbjct: 341 PHLPGPP-----PGAPPPAPHV 357
Score = 29.6 bits (65), Expect = 4.2
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 197 PPTEGGLWSDQVSWPLWEDVK-TPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSS 255
PP G + + PL + P P PG P A P P PAF PP S P S
Sbjct: 316 PPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDS 375
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 41.6 bits (96), Expect = 0.001
Identities = 66/241 (27%), Positives = 85/241 (35%), Gaps = 19/241 (7%)
Query: 69 SCQGPFGSRIAAVPARSGGGCCPPAPKGMSAHGLGWDPQSCGKIFHPSWAPLPSVGKGLS 128
S +GP S A+V + PAP A G G PQ+ P AP P +
Sbjct: 710 SAEGPHLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASP--APAPQIPAAAP 767
Query: 129 LVFWAQPASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPESTSVLLNWV 188
L P S L + A LG + P + P +R P++ S +
Sbjct: 768 L---KGPGPSSSPSLPHQ----APLGDS-PHLPSPHPTRPPSRPPSRPQSVSRPPSEPPL 819
Query: 189 IRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRS 248
P PPT G++ Q + P P PG P P P QPP P PP +
Sbjct: 820 HPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPL-RPQSQPPEGPLPP--A 876
Query: 249 PDPAVSSAHSFPAPRLAWSCVLHSP------LSLPLSKLPPLYLTHSPLRHQSTQAQVPA 302
P SS S A S L +P L P S+ P T P H + P
Sbjct: 877 PHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSPTPPPTLHLVPEPAAPP 936
Query: 303 P 303
P
Sbjct: 937 P 937
Score = 36.2 bits (82), Expect = 0.045
Identities = 46/183 (25%), Positives = 65/183 (35%), Gaps = 25/183 (13%)
Query: 167 LPTARSPAQHPPESTSVLLNW--------VIRALGPLVPPTEGGLWSDQVSWPLWEDVKT 218
LPT PA P +T+VL ++ LV P + + + L
Sbjct: 566 LPTQSQPAPAGPAATTVLQGVTLPPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQPAP 625
Query: 219 PEPGEPGSPLPASPHPPL--QPPAFPDPPIRSPDPAVSSAHSFPAPRLAWS---CVLHSP 273
P +PLP P QPP P P +P A + P+P LA S VL P
Sbjct: 626 QAPPAVSTPLPLGLQQPQAQQPPQAPTPQAAAPPQATTPQ---PSPGLASSPEKIVLGQP 682
Query: 274 LSLP---------LSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRR 324
S L P + PL + VPA + S D TP+++
Sbjct: 683 PSATPTAILTQDSLQMFLPQERSQQPLSAEGPHLSVPASVIVSAPPPAQDPAPATPVAKG 742
Query: 325 SGV 327
+G+
Sbjct: 743 AGL 745
Score = 35.8 bits (81), Expect = 0.058
Identities = 45/158 (28%), Positives = 57/158 (36%), Gaps = 35/158 (22%)
Query: 161 GAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWED--VKT 218
G G Q + SPA P I A PL P S PL + + +
Sbjct: 744 GLGPQAPDSQASPAPAPQ----------IPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPS 793
Query: 219 PEPGEPGSPLPASPH----PPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPL 274
P P P S P+ P PP +PP P PP ++P P L V+ + L
Sbjct: 794 PHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPPQAP------------PTLPGIFVIQNQL 841
Query: 275 SLPLSKLPPLYLT----HSPLRHQSTQAQ---VPAPHL 305
+P P PLR QS + PAPHL
Sbjct: 842 GVPPPASNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHL 879
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 41.6 bits (96), Expect = 0.001
Identities = 57/202 (28%), Positives = 72/202 (35%), Gaps = 54/202 (26%)
Query: 154 GSAVPLFGAGWQLLPTARSPAQHPPESTSVLLN-----WVIRALGPLVPPTEGGLWSDQV 208
GS+ P F LP +P+ PP ++ LN W LVP G +
Sbjct: 197 GSSSPRF------LPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPAPHA 250
Query: 209 SW------PLWE--DVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFP 260
S PL+ D TP P P + LPA P P QPP VSSA
Sbjct: 251 SSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPP-------------VSSA---- 293
Query: 261 APRLAWSCVLHSPLSL-PLSKLP-------PLYLTHSPLRHQSTQAQVPAPHLYSQTWEG 312
+H PL L PL P P +L S L + P P T +G
Sbjct: 294 --------TMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPP--PSTLQG 343
Query: 313 DDMKTQTPLSRRSGVCRGADRR 334
+ Q P + S R + RR
Sbjct: 344 RRPRAQAPSASHSSSLRPSQRR 365
Score = 36.6 bits (83), Expect = 0.034
Identities = 43/139 (30%), Positives = 50/139 (35%), Gaps = 37/139 (26%)
Query: 168 PTARSPAQHP---PESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEP 224
P A +P P PE + +L V+ LG PT G SD L D P P
Sbjct: 389 PRAPAPVPQPFSLPEPSQPILPSVLSLLGL---PTPGPSHSDGSFNLLGSDAHLPPPPTL 445
Query: 225 GSPLPASPHPPLQP-------------PAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLH 271
S P P P+QP P P PP S P V P+P VL
Sbjct: 446 SSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASKAPVV------PSP------VLQ 493
Query: 272 SPL------SLPLSKLPPL 284
SP + P LPPL
Sbjct: 494 SPSEGLGMGAGPACPLPPL 512
>gi|145207994 hairy and enhancer of split 7 [Homo sapiens]
Length = 225
Score = 41.2 bits (95), Expect = 0.001
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 217 KTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSL 276
K P P +P P P +P P L P A P P V H P+PR AWS L SP +
Sbjct: 129 KPPRP-KPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGH--PSPRCAWSPSLCSPRAG 185
Query: 277 PLSKLPPL--YLTHSPLRHQ---STQAQVPAPHLYSQTW 310
PL L P H+ + +A +P P + + W
Sbjct: 186 DSGAPAPLTGLLPPPPPPHRQDGAPKAPLPPPPAFWRPW 224
Score = 28.5 bits (62), Expect = 9.3
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 168 PTARSPAQHPPESTSVLLNWVIRALGPLV---PPTEGGLWSDQVSWPLWEDVKTPEPGEP 224
P P P + L+ ALGP + PP G S + +W + +P G+
Sbjct: 130 PPRPKPVDPRPPAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAWS--PSLCSPRAGDS 187
Query: 225 GSPLPAS--------PHPPLQPPAFPDPP 245
G+P P + PH P P PP
Sbjct: 188 GAPAPLTGLLPPPPPPHRQDGAPKAPLPP 216
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 40.8 bits (94), Expect = 0.002
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPL 278
P P EP SP A P P + PAFP P + +P+ + S+A + P P + S P
Sbjct: 1125 PTPEEPASPAAAVPTP--EEPAFPAPAVPTPEESASAAVAVPTPEESASPAAAVPTPAES 1182
Query: 279 SKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWE 311
+ + T S A VP P T E
Sbjct: 1183 ASFAAVVATLE--EPTSPAASVPTPAAMVATLE 1213
Score = 35.8 bits (81), Expect = 0.058
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 28/127 (22%)
Query: 167 LPTARSPAQ------HPPESTSVLLNWVIRALGPLVPPTEGG---LWSDQVSWPLWEDVK 217
+PT+ PA +P E TS A+ L PT L +++S P
Sbjct: 1222 VPTSEEPASLAAAVSNPEEPTSPAA-----AVPTLEEPTSSAAAVLTPEELSSPA---AS 1273
Query: 218 TPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLP 277
P P EP SP A + L+ PA P + +P+ A A S P P + ++P
Sbjct: 1274 VPTPEEPASPAAAVSN--LEEPASPAAAVPTPEVAAIPAASVPTPEVP---------AIP 1322
Query: 278 LSKLPPL 284
+ +PP+
Sbjct: 1323 AAAVPPM 1329
Score = 34.7 bits (78), Expect = 0.13
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPL 278
P P EP SP A+ PP + P P + +P+ S A + P P S P P
Sbjct: 1021 PTPEEPTSP--AAAVPPPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVP--TPE 1076
Query: 279 SKLPPLYLTHSPLRHQSTQAQVPAP 303
P +P S A VP P
Sbjct: 1077 EPTSPAAAVPTPEEPTSPAAAVPTP 1101
Score = 32.3 bits (72), Expect = 0.64
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP 262
P P EP SP A P P + PA P + +P+ S A + P P
Sbjct: 1099 PTPEEPTSPAAAVPTP--EEPASPAAAVPTPEEPASPAAAVPTP 1140
Score = 32.3 bits (72), Expect = 0.64
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPL 278
P P EP SP A P P + PA P + +P+ A + P P + S + P P
Sbjct: 1112 PTPEEPASPAAAVPTP--EEPASPAAAVPTPEEPAFPAPAVPTPEESASAAVAVP--TPE 1167
Query: 279 SKLPPLYLTHSPLRHQSTQAQV 300
P +P S A V
Sbjct: 1168 ESASPAAAVPTPAESASFAAVV 1189
Score = 31.2 bits (69), Expect = 1.4
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 216 VKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLS 275
V+ P EP SP A+ P + P P + +P+ S A + P P S P
Sbjct: 992 VRVSTPEEPASP--AAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPPPEEPTSPAAAVP-- 1047
Query: 276 LPLSKLPPLYLTHSPLRHQSTQAQVPAP 303
P P +P S A VP P
Sbjct: 1048 TPEEPTSPAAAVPTPEEPTSPAAAVPTP 1075
Score = 28.9 bits (63), Expect = 7.1
Identities = 36/147 (24%), Positives = 47/147 (31%), Gaps = 33/147 (22%)
Query: 168 PTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSP 227
P A P P S + A+ P PT P P P EP SP
Sbjct: 1016 PAAAVPTPEEPTSPAA-------AVPPPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSP 1068
Query: 228 L-----------PASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSL 276
PA+ P + P P + +P+ S A + P P P S
Sbjct: 1069 AAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTP--------EEPAS- 1119
Query: 277 PLSKLPPLYLTHSPLRHQSTQAQVPAP 303
P + +P +P S A VP P
Sbjct: 1120 PAAAVP------TPEEPASPAAAVPTP 1140
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 211 PLWEDVKTPEPGEPGSPLPASPHPP-----LQPPAFPDPPIRSPDPAVSSAHSFPAPRLA 265
P W +P PG PGSP P+SP+ P + P P P + +P ++ +P +
Sbjct: 1563 PAW----SPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSP--AYEPRSPGGYTPQSPSYS 1616
Query: 266 WSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQT 309
+ +SP S S P Y SP ++ + P YS T
Sbjct: 1617 PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPT 1660
Score = 37.7 bits (86), Expect = 0.015
Identities = 63/243 (25%), Positives = 89/243 (36%), Gaps = 49/243 (20%)
Query: 72 GPFGSRIAAVPARSGGGCCPPAPKGMSAHGLGWDPQSCGKIFHPSWAPLPSVGKGLSLVF 131
GP G + P+ GG PA M+ G P + +W+P SVG G++
Sbjct: 1497 GPTGMFFGSAPSPMGG--ISPA---MTPWNQGATPA------YGAWSP--SVGSGMT--- 1540
Query: 132 WAQPASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPESTSVLLNWVIRA 191
P + FS + P + W PT SP P S +
Sbjct: 1541 ---PGAAGFSPSAASDA-----SGFSPGYSPAWS--PTPGSPGSPGPSSPYI-------- 1582
Query: 192 LGPLVPPTEGGLWSDQVS--WPLWEDVKTPEPGEPGSP--LPASP-HPPLQPPAFPDPPI 246
P+ GG S S P +E ++P P SP P SP + P P P P
Sbjct: 1583 ------PSPGGAMSPSYSPTSPAYEP-RSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPN 1635
Query: 247 RSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLTHSPLRHQSTQAQVPAPHLY 306
SP S ++S +P + + +SP S S P Y SP ++ + P Y
Sbjct: 1636 YSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692
Query: 307 SQT 309
S T
Sbjct: 1693 SPT 1695
Score = 30.0 bits (66), Expect = 3.2
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 224 PGSPL--PASP-HPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 280
P SP P+SP + P P P P SP S +S +P + + +SP S S
Sbjct: 1841 PTSPSYSPSSPEYTPTSPKYSPTSPKYSP---TSPKYSPTSPTYSPTTPKYSPTSPTYSP 1897
Query: 281 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 309
P+Y SP ++ P YS T
Sbjct: 1898 TSPVYTPTSPKYSPTSPTYSPTSPKYSPT 1926
Score = 29.6 bits (65), Expect = 4.2
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 224 PGSP--LPASP-HPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 280
P SP P SP + P P P P +P S +S +P + + +SP S S
Sbjct: 1750 PTSPNYTPTSPSYSPTSPSYSPTSPNYTP---TSPNYSPTSPSYSPTSPSYSPTSPSYSP 1806
Query: 281 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 309
P Y SP S+ + P+ YS T
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPT 1835
Score = 29.6 bits (65), Expect = 4.2
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 224 PGSP--LPASP-HPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 280
P SP P SP + P P P P SP S ++ +P S +SP S S
Sbjct: 1778 PTSPNYSPTSPSYSPTSPSYSPTSPSYSPS---SPRYTPQSPTYTPSSPSYSPSSPSYSP 1834
Query: 281 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 309
P Y SP S+ P YS T
Sbjct: 1835 TSPKYTPTSPSYSPSSPEYTPTSPKYSPT 1863
Score = 29.6 bits (65), Expect = 4.2
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 224 PGSP--LPASP-HPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 280
P SP P SP + P P P P SP S +S +P+ + + +SP + S
Sbjct: 1834 PTSPKYTPTSPSYSPSSPEYTPTSPKYSP---TSPKYSPTSPKYSPTSPTYSPTTPKYSP 1890
Query: 281 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 309
P Y SP+ ++ P YS T
Sbjct: 1891 TSPTYSPTSPVYTPTSPKYSPTSPTYSPT 1919
Score = 28.5 bits (62), Expect = 9.3
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 224 PGSP--LPASP-HPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSK 280
P SP P SP + P P P P SP S ++S +PR ++P S S
Sbjct: 1771 PTSPNYTPTSPNYSPTSPSYSPTSPSYSP---TSPSYSPSSPRYTPQSPTYTPSSPSYSP 1827
Query: 281 LPPLYLTHSPLRHQSTQAQVPAPHLYSQT 309
P Y SP ++ + P+ Y+ T
Sbjct: 1828 SSPSYSPTSPKYTPTSPSYSPSSPEYTPT 1856
Score = 28.5 bits (62), Expect = 9.3
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 224 PGSPLPASPHPPLQPPAFPDPPIRSPD-PAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLP 282
P SP SP P P P SP+ S +S +P+ + + +SP S S
Sbjct: 1827 PSSPSY-SPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTT 1885
Query: 283 PLYLTHSPLRHQSTQAQVPAPHLYSQT 309
P Y SP ++ P YS T
Sbjct: 1886 PKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 217 KTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSL 276
+TPEP P P P P P P P I + P ++S PA L P+ L
Sbjct: 2035 QTPEPPPPPPPPPPPPLPAAPPQPASTPAIPASAPPITSPTIAPAQPSVPLTQLSMPMEL 2094
Query: 277 PLSKLPPLYLTHSPLRHQSTQAQVP 301
P+ PL + PL Q+ AQ+P
Sbjct: 2095 PI--FSPLMMQTMPL--QTLPAQLP 2115
Score = 29.6 bits (65), Expect = 4.2
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 215 DVKTPEPGEPGSPLPASPHPPLQP-PAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSP 273
+++ E E + P P L P+ P PP ++P P S P+P S + H P
Sbjct: 2453 ELQQQEQPEQKTNTPQQKLPQLVSLPSLPQPPPQAPPPQCPLPQSSPSP----SQLSHLP 2508
Query: 274 LSLPLSKLPPLYLTHSP---LRHQSTQAQVPAP 303
L PL P L + P + +Q Q ++ P
Sbjct: 2509 LK-PLHTSTPQQLANLPPQLIPYQCDQCKLAFP 2540
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 39.3 bits (90), Expect = 0.005
Identities = 43/129 (33%), Positives = 50/129 (38%), Gaps = 22/129 (17%)
Query: 145 SRSMCCAWL----GSAVPLFGAGWQLLPTARSPAQHPPESTSVL-LNWVIRALGPLVPPT 199
SR C+ L G AV AGW P P HPPE S L A P+ PP
Sbjct: 702 SREGACSCLPLERGDAV----AGWGGHPALGCP--HPPEDDSSLRAERGSLADLPMAPPA 755
Query: 200 EGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDP-----AVS 254
+ PL + P PG P +P PP PP P P SPDP +
Sbjct: 756 SA---PPEFLDPL---MGAAAPQYPGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPG 809
Query: 255 SAHSFPAPR 263
S S P P+
Sbjct: 810 SGLSSPGPK 818
Score = 28.9 bits (63), Expect = 7.1
Identities = 33/125 (26%), Positives = 40/125 (32%), Gaps = 27/125 (21%)
Query: 213 WEDVKTPEPGEPGSPLPASPHPPLQPPAF-PDPPIRSPDPAVSSAHSFPAPRLAWSCVLH 271
W D P+P P PLP P P QP P PP P+ A P R L
Sbjct: 1166 WVDNTRPQPPPP--PLP--PPPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRAGGDTALS 1221
Query: 272 SPLSLPL-----SKLPPLYLTHSPLRHQSTQAQV-----------------PAPHLYSQT 309
P ++P L+L P + S Q + P P
Sbjct: 1222 GDGDPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSLALPPLTLTPFPGPGPRRPP 1281
Query: 310 WEGDD 314
WEG D
Sbjct: 1282 WEGAD 1286
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 38.9 bits (89), Expect = 0.007
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 170 ARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSD--QVSWPLWEDVKTPEPGEPGSP 227
A + P + + L+ + + +GP +PP L + + S PL + + P P SP
Sbjct: 1606 ANADTSTPTDCSPDTLSKIRQEVGPPLPPLLAPLIATPPRTSQPLSPLISSSSPSSPASP 1665
Query: 228 LPA------SPHPPLQPPAFPDP-----PIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSL 276
+ +P PP P DP P SP P+ +SA P C +L
Sbjct: 1666 VGQVSPFRETPVPPAMSPWPEDPRRASPPDPSPSPSAASASERVVPSPLQFCAATPKHAL 1725
Query: 277 PL-SKLPPLYLTHS 289
P+ +LPP H+
Sbjct: 1726 PVPGRLPPCASGHA 1739
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 38.9 bits (89), Expect = 0.007
Identities = 59/206 (28%), Positives = 73/206 (35%), Gaps = 58/206 (28%)
Query: 121 PSVGKGLSLVFWAQPASHSFSGLESRSMCCAWLGSAVPLFG---AGWQLLPTARSPAQ-- 175
PS G GL +PAS S S SA PL +G T R+PA
Sbjct: 228 PSAGGGLQ-----RPASRSLSS------------SATPLSSPARSGPSARGTPRAPAHPS 270
Query: 176 ----------HPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPG 225
PP+ T + ALGPL + L + S L P P
Sbjct: 271 QPKPKGLQALRPPQVTPPRKD-AAPALGPL---SSSPLATPSPSAALQSQAPPTLPATPH 326
Query: 226 S---------PLPASPHPPLQPPA---FPDPPIRSP--------DPAVSSAHSF-PAPRL 264
S PLP +P P PP+ P PP P P + + HSF P+P L
Sbjct: 327 SSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPL 386
Query: 265 AWSCVLHSPLSLPLSKLPPLYLTHSP 290
+ P + P LPPL SP
Sbjct: 387 S-PLATPPPQAPPALALPPLQAPPSP 411
Score = 38.5 bits (88), Expect = 0.009
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 25/123 (20%)
Query: 168 PTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEP--- 224
P+A P+Q PP + L VPP S S P+ P P
Sbjct: 462 PSATPPSQAPPSLAAPPLQ---------VPP------SPPASPPMSPSATPPPQAPPPLA 506
Query: 225 GSPLPASPHPPLQPPAFPDPPIRS-PDPAVSSAHSFP--APRLAWSCVLHSPLSLPLSKL 281
PL + PP PPA PP+++ P P S FP AP + + SPL+ P +
Sbjct: 507 APPLQLAKPPPQAPPALATPPLQALPSPPAS----FPGQAPFSPSASLPMSPLATPPPQA 562
Query: 282 PPL 284
PP+
Sbjct: 563 PPV 565
Score = 35.4 bits (80), Expect = 0.076
Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 28/128 (21%)
Query: 167 LPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGS 226
L T SP PP + L P + T L S +S + TP P P +
Sbjct: 351 LQTLPSPPATPPSQATTSLG------SPTLQATHSFLPSPPLS-----PLATPPPQAPPA 399
Query: 227 ----PLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLP 282
PL A P PP PP P+ +P P AP +L +P S P S P
Sbjct: 400 LALPPLQAPPSPPASPPL---SPLATPSP--------QAPNALAVHLLQAPFSPPPS--P 446
Query: 283 PLYLTHSP 290
P+ SP
Sbjct: 447 PVQAPFSP 454
Score = 30.4 bits (67), Expect = 2.4
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 172 SPAQHP-PESTSVLLNWVIRALGPLVPPTEGGL---WSDQVSWPLWEDVKTPEPGEPGSP 227
SP P P++ + L +++A P PP + +S S P+ P P
Sbjct: 418 SPLATPSPQAPNALAVHLLQA--PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLA 475
Query: 228 LPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLT 287
P PP P + P P +P P + P +LA P + P PPL
Sbjct: 476 APPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLA----KPPPQAPPALATPPLQAL 531
Query: 288 HSP 290
SP
Sbjct: 532 PSP 534
Score = 29.6 bits (65), Expect = 4.2
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 221 PGEPGSP--LPASPHPPLQPPAFPDPPIR--SPDPAVSSAHSFPAPRLAWSCVLHSPLSL 276
P P SP P++ PP PP PP++ P P A + P + S P
Sbjct: 483 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQA 542
Query: 277 PLSKLPPLYLTHSPLRHQSTQA 298
P S P L SPL QA
Sbjct: 543 PFS--PSASLPMSPLATPPPQA 562
Score = 29.3 bits (64), Expect = 5.4
Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 21/107 (19%)
Query: 162 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 221
A + P A P Q PP + LL VPP S S L + P P
Sbjct: 548 ASLPMSPLATPPPQAPPVLAAPLLQ---------VPP------SPPASPTLQAPRRPPTP 592
Query: 222 GE------PGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP 262
G P L +P PP P P + PD A S+ + P
Sbjct: 593 GPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTP 639
Score = 28.9 bits (63), Expect = 7.1
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 168 PTARSPAQHPPESTSVLLNWVI---RALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEP 224
P+A P Q PP + L +A L P L S S+P P P
Sbjct: 493 PSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFP------GQAPFSP 546
Query: 225 GSPLPASP--HPPLQPPAFPDPPIRSPDPAVSSAHSFPAPR 263
+ LP SP PP Q P P+ P+ ++ + APR
Sbjct: 547 SASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR 587
>gi|24497460 Shaw-related voltage-gated potassium channel protein 3
[Homo sapiens]
Length = 757
Score = 38.9 bits (89), Expect = 0.007
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAF---------PDPPIRSPDPAVSSAHSFPA-PRLAWSC 268
P P +PGSP P PP PP P PPI P V+ A ++PA P
Sbjct: 564 PRPPQPGSPNYCKPDPPPPPPPHPHHGSGGISPPPPITPPSMGVTVAGAYPAGPHTHPGL 623
Query: 269 VLHSPLSLPLSKLPPL 284
+ L + LPPL
Sbjct: 624 LRGGAGGLGIMGLPPL 639
Score = 30.0 bits (66), Expect = 3.2
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 220 EPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPR 263
+P P P P SP PP PP P P PA S A PAPR
Sbjct: 20 QPAPPPQP-PESPPPPPLPPQQQQP--AQPGPAASPAGP-PAPR 59
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 38.9 bits (89), Expect = 0.007
Identities = 51/210 (24%), Positives = 66/210 (31%), Gaps = 30/210 (14%)
Query: 78 IAAVPARSGGGCCPPAPKGMSAHGLGWDP--QSCGKIFHPSWAPLPSVGKGLSLVFWAQP 135
+ PA+ G PP + + L P QS K P+ P+ G G A P
Sbjct: 397 VGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGP 456
Query: 136 ASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPL 195
S G A P P PA+ PP+ G
Sbjct: 457 GKTSAQQTGPTKPPSQLPGPAKPP--------PQQPGPAKPPPQQP-----------GSA 497
Query: 196 VPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSS 255
PP+ Q + P P +P P S PP Q P P + P PA S
Sbjct: 498 KPPS-------QQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
Query: 256 AH--SFPAPRLAWSCVLHSPLSLPLSKLPP 283
A + P + L P P +K PP
Sbjct: 551 AQQSTKPVSQTGSGKPLQPPTVSPSAKQPP 580
Score = 33.9 bits (76), Expect = 0.22
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 220 EPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAV 253
+P P P P P PP PP P PP SP P +
Sbjct: 2404 QPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTI 2437
Score = 32.7 bits (73), Expect = 0.49
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPI 246
P P P P P P PPL PP P P I
Sbjct: 2410 PPPPPPPPPPPPPPPPPLPPPTSPKPTI 2437
Score = 30.4 bits (67), Expect = 2.4
Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 177 PPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPP- 235
PP S L + + G + PP + + + PL P + GS P+S P
Sbjct: 331 PPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGP--AKPPAQQTGSEKPSSEQPGP 388
Query: 236 ---LQPPAFPDPPIRSPDPAVSSAHSFPAPR-LAWSCVLHSPLSLP 277
QPP P + P PA P+ LA L SP P
Sbjct: 389 KALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAP 434
Score = 30.0 bits (66), Expect = 3.2
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 194 PLVPPTEGGLWSDQVSWPLWEDVKTPEP-------GEPGSP-LPASPHPPLQPPAFPDPP 245
P+ PT+ +D PL D P+ GE P LP+ PP+Q P PP
Sbjct: 257 PIQGPTQTPQ-TDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPP 315
Query: 246 IRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLP 282
+ P H P A S L+ PL++ P
Sbjct: 316 AQQP------GHEKSQPGPAKPPAQPSGLTKPLAQQP 346
Score = 28.9 bits (63), Expect = 7.1
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 227 PLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLY 285
P P P PP PP P PP P P P +L ++ P++ PL+
Sbjct: 2406 PPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLT--------VASPVTTATPLF 2456
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 38.9 bits (89), Expect = 0.007
Identities = 51/210 (24%), Positives = 66/210 (31%), Gaps = 30/210 (14%)
Query: 78 IAAVPARSGGGCCPPAPKGMSAHGLGWDP--QSCGKIFHPSWAPLPSVGKGLSLVFWAQP 135
+ PA+ G PP + + L P QS K P+ P+ G G A P
Sbjct: 397 VGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGP 456
Query: 136 ASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPESTSVLLNWVIRALGPL 195
S G A P P PA+ PP+ G
Sbjct: 457 GKTSAQQTGPTKPPSQLPGPAKPP--------PQQPGPAKPPPQQP-----------GSA 497
Query: 196 VPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAVSS 255
PP+ Q + P P +P P S PP Q P P + P PA S
Sbjct: 498 KPPS-------QQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 550
Query: 256 AH--SFPAPRLAWSCVLHSPLSLPLSKLPP 283
A + P + L P P +K PP
Sbjct: 551 AQQSTKPVSQTGSGKPLQPPTVSPSAKQPP 580
Score = 33.9 bits (76), Expect = 0.22
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 220 EPGEPGSPLPASPHPPLQPPAFPDPPIRSPDPAV 253
+P P P P P PP PP P PP SP P +
Sbjct: 2404 QPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTI 2437
Score = 32.7 bits (73), Expect = 0.49
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPI 246
P P P P P P PPL PP P P I
Sbjct: 2410 PPPPPPPPPPPPPPPPPLPPPTSPKPTI 2437
Score = 30.4 bits (67), Expect = 2.4
Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 177 PPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPP- 235
PP S L + + G + PP + + + PL P + GS P+S P
Sbjct: 331 PPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGP--AKPPAQQTGSEKPSSEQPGP 388
Query: 236 ---LQPPAFPDPPIRSPDPAVSSAHSFPAPR-LAWSCVLHSPLSLP 277
QPP P + P PA P+ LA L SP P
Sbjct: 389 KALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAP 434
Score = 30.0 bits (66), Expect = 3.2
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 194 PLVPPTEGGLWSDQVSWPLWEDVKTPEP-------GEPGSP-LPASPHPPLQPPAFPDPP 245
P+ PT+ +D PL D P+ GE P LP+ PP+Q P PP
Sbjct: 257 PIQGPTQTPQ-TDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPP 315
Query: 246 IRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLP 282
+ P H P A S L+ PL++ P
Sbjct: 316 AQQP------GHEKSQPGPAKPPAQPSGLTKPLAQQP 346
Score = 28.9 bits (63), Expect = 7.1
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 227 PLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLY 285
P P P PP PP P PP P P P +L ++ P++ PL+
Sbjct: 2406 PPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKKKLT--------VASPVTTATPLF 2456
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 38.9 bits (89), Expect = 0.007
Identities = 55/188 (29%), Positives = 68/188 (36%), Gaps = 53/188 (28%)
Query: 135 PASHSFSGLESRSMCCAWLGSAVPLFGAGWQLLPTARSPAQHPPESTSVLLNWVIRALGP 194
PA H FS S +P AG+ P HP S +A GP
Sbjct: 933 PAQHHFS-------------SGIP---AGFPAPRIGPQPQPHPQPHPS-------QAFGP 969
Query: 195 -------------LVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAF 241
L PP GL Q +P P+PG G P PPL +
Sbjct: 970 QPPQQPLPLQHPHLFPPQAPGLLPPQSPYPY-----APQPGVLGQP-----PPPLHTQLY 1019
Query: 242 PDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSL-PLSKLPPLYLTHSPL--RHQSTQA 298
P P + P PA S A FP+P H PL+ P P+ +PL R S+
Sbjct: 1020 PG-PAQDPLPAHSGALPFPSPGPPQP--PHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAG 1076
Query: 299 Q-VPAPHL 305
Q P+PHL
Sbjct: 1077 QSTPSPHL 1084
Score = 32.3 bits (72), Expect = 0.64
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 219 PEPGEPGSPLPASPHPPLQPPAFPDPPIRSPDP-AVSSAHSFPAPRLAWSCVLHSPLSLP 277
P P EP PAS P+ PP+ SP P A P P S S L L
Sbjct: 1521 PGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVPEAPSSGPPSSSLELL 1580
Query: 278 LSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTP 320
S P + S LR + ++ H + Q G ++ P
Sbjct: 1581 ASLTPEAFSLDSSLRGKQRMSK----HNFLQAHNGQGLRATRP 1619
Score = 31.2 bits (69), Expect = 1.4
Identities = 46/186 (24%), Positives = 57/186 (30%), Gaps = 36/186 (19%)
Query: 168 PTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSP 227
P A P+ PP+ + L +R V + + S P P P P
Sbjct: 856 PVAGLPSAPPPQFSGPELAMAVRPATTTVDSIQAPIPSHTAPRP------NPTPAPPPPC 909
Query: 228 LPASPHPPLQPPAFPDPPIRSPDPAVSSAHS-----FPAPRLAWSCVLH-----SPLSLP 277
P P PL P + P PA S FPAPR+ H S P
Sbjct: 910 FPVPPPQPLPTPYTYPAGAKQPIPAQHHFSSGIPAGFPAPRIGPQPQPHPQPHPSQAFGP 969
Query: 278 LSKLPPLYLTHS-----------------PLRHQSTQAQVPAPHLYSQTWEGDDMKTQTP 320
PL L H P Q P P L++Q + G Q P
Sbjct: 970 QPPQQPLPLQHPHLFPPQAPGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYPG---PAQDP 1026
Query: 321 LSRRSG 326
L SG
Sbjct: 1027 LPAHSG 1032
Score = 29.3 bits (64), Expect = 5.4
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 193 GPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGSPLPASPHPPLQPPAFPDPPIRSP 249
GP PP GL S P + + P SPLP +P P +PP P+ P P
Sbjct: 1522 GPAEPP---GL--PPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPV-PEAPSSGP 1572
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 38.9 bits (89), Expect = 0.007
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 219 PEPGEPGSPLPASPH--PPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSL 276
P PG P P P P PP PP P P + P P P PR ++ PL
Sbjct: 462 PPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPP-----GIPPPRPG---MMRPPLVP 513
Query: 277 PLSKLPPLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQT 319
PL PP +PL + + AP Q + DD T
Sbjct: 514 PLGPAPPGLFPPAPLPNPGV---LSAPPNLIQRPKADDTSAAT 553
>gi|148727264 transcription elongation regulator 1-like [Homo
sapiens]
Length = 586
Score = 38.9 bits (89), Expect = 0.007
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 221 PGEPGSPLPASPHPPLQP-PAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSP-LSLPL 278
PG PG P P+ P PL P P+ PD A ++AH FPA W HSP L LP
Sbjct: 75 PGLPGWPAPSEPVLPLLPLPSAPD------SAAAAAAHPFPALHGQWLFGGHSPSLGLPP 128
Query: 279 S 279
S
Sbjct: 129 S 129
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 38.5 bits (88), Expect = 0.009
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 25/123 (20%)
Query: 168 PTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEP--- 224
P+A P+Q PP + L VPP S S P+ P P
Sbjct: 423 PSATPPSQAPPSLAAPPLQ---------VPP------SPPASPPMSPSATPPPQAPPPLA 467
Query: 225 GSPLPASPHPPLQPPAFPDPPIRS-PDPAVSSAHSFP--APRLAWSCVLHSPLSLPLSKL 281
PL + PP PPA PP+++ P P S FP AP + + SPL+ P +
Sbjct: 468 APPLQLAKPPPQAPPALATPPLQALPSPPAS----FPGQAPFSPSASLPMSPLATPPPQA 523
Query: 282 PPL 284
PP+
Sbjct: 524 PPV 526
Score = 37.4 bits (85), Expect = 0.020
Identities = 55/188 (29%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 121 PSVGKGLSLVFWAQPASHSFSGLESRSMCCAWLGSAVPLFG---AGWQLLPTARSPAQHP 177
PS G GL +PAS S S SA PL +G T R+PA HP
Sbjct: 219 PSAGGGLQ-----RPASRSLSS------------SATPLSSPARSGPSARGTPRAPA-HP 260
Query: 178 PESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKT--PEPGEP-GSPLPASPHP 234
+ + L L PP QV+ P + P P +P P++P
Sbjct: 261 SQPKP-------KGLQALRPP--------QVTPPRKDAAPALGPLSSSPLATPSPSAPPS 305
Query: 235 PLQPPA---FPDPPIRSP--------DPAVSSAHSF-PAPRLAWSCVLHSPLSLPLSKLP 282
P PP+ P PP P P + + HSF P+P L+ P + P LP
Sbjct: 306 PSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLS-PLATPPPQAPPALALP 364
Query: 283 PLYLTHSP 290
PL SP
Sbjct: 365 PLQAPPSP 372
Score = 35.4 bits (80), Expect = 0.076
Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 28/128 (21%)
Query: 167 LPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEPGS 226
L T SP PP + L P + T L S +S + TP P P +
Sbjct: 312 LQTLPSPPATPPSQATTSLG------SPTLQATHSFLPSPPLS-----PLATPPPQAPPA 360
Query: 227 ----PLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLP 282
PL A P PP PP P+ +P P AP +L +P S P S P
Sbjct: 361 LALPPLQAPPSPPASPPL---SPLATPSP--------QAPNALAVHLLQAPFSPPPS--P 407
Query: 283 PLYLTHSP 290
P+ SP
Sbjct: 408 PVQAPFSP 415
Score = 30.4 bits (67), Expect = 2.4
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 172 SPAQHP-PESTSVLLNWVIRALGPLVPPTEGGL---WSDQVSWPLWEDVKTPEPGEPGSP 227
SP P P++ + L +++A P PP + +S S P+ P P
Sbjct: 379 SPLATPSPQAPNALAVHLLQA--PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLA 436
Query: 228 LPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPRLAWSCVLHSPLSLPLSKLPPLYLT 287
P PP P + P P +P P + P +LA P + P PPL
Sbjct: 437 APPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLA----KPPPQAPPALATPPLQAL 492
Query: 288 HSP 290
SP
Sbjct: 493 PSP 495
Score = 29.6 bits (65), Expect = 4.2
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 221 PGEPGSP--LPASPHPPLQPPAFPDPPIR--SPDPAVSSAHSFPAPRLAWSCVLHSPLSL 276
P P SP P++ PP PP PP++ P P A + P + S P
Sbjct: 444 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQA 503
Query: 277 PLSKLPPLYLTHSPLRHQSTQA 298
P S P L SPL QA
Sbjct: 504 PFS--PSASLPMSPLATPPPQA 523
Score = 29.3 bits (64), Expect = 5.4
Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 21/107 (19%)
Query: 162 AGWQLLPTARSPAQHPPESTSVLLNWVIRALGPLVPPTEGGLWSDQVSWPLWEDVKTPEP 221
A + P A P Q PP + LL VPP S S L + P P
Sbjct: 509 ASLPMSPLATPPPQAPPVLAAPLLQ---------VPP------SPPASPTLQAPRRPPTP 553
Query: 222 GE------PGSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAP 262
G P L +P PP P P + PD A S+ + P
Sbjct: 554 GPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTP 600
Score = 28.9 bits (63), Expect = 7.1
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 168 PTARSPAQHPPESTSVLLNWVI---RALGPLVPPTEGGLWSDQVSWPLWEDVKTPEPGEP 224
P+A P Q PP + L +A L P L S S+P P P
Sbjct: 454 PSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFP------GQAPFSP 507
Query: 225 GSPLPASP--HPPLQPPAFPDPPIRSPDPAVSSAHSFPAPR 263
+ LP SP PP Q P P+ P+ ++ + APR
Sbjct: 508 SASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR 548
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,773,911
Number of Sequences: 37866
Number of extensions: 1293270
Number of successful extensions: 13915
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 641
Number of HSP's that attempted gapping in prelim test: 8745
Number of HSP's gapped (non-prelim): 3901
length of query: 347
length of database: 18,247,518
effective HSP length: 103
effective length of query: 244
effective length of database: 14,347,320
effective search space: 3500746080
effective search space used: 3500746080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.