SYNPO 27466

Name: SYNPO	Sequence: fasta or formatted (903aa)		NCBI GI: 40353727
Description: synaptopodin isoform A		Referenced in: Synapses
Other entries for this name: alt prot [685aa] synaptopodin isoform B
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.1 91 3 C cysteine 0.8 7 1 D aspartate 2.5 23 1 E glutamate 5.9 53 4 F phenylalanine 1.8 16 1 G glycine 4.9 44 2 H histidine 1.1 10 1 I isoleucine 2.0 18 2 K lysine 3.3 30 1 L leucine 7.4 67 2 M methionine 1.8 16 2 N asparagine 3.0 27 1 P proline 17.2 155 12 Q glutamine 4.0 36 2 R arginine 7.9 71 2 S serine 14.1 127 3 T threonine 5.2 47 3 V valine 4.4 40 2 W tryptophan 1.0 9 1 Y tyrosine 1.8 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptopodin isoform A SYNPO 0.734 synaptopodin isoform B SYNPO2L 0.068 synaptopodin 2-like isoform a SYNPO2L 0.068 synaptopodin 2-like isoform b SYNPO2 0.052 synaptopodin 2 isoform a NACA 0.050 nascent polypeptide-associated complex alpha subuni... FLJ22184 0.045 PREDICTED: hypothetical protein LOC80164 FLJ22184 0.044 PREDICTED: hypothetical protein FLJ22184 SYNPO2 0.042 synaptopodin 2 isoform c SYNPO2 0.042 synaptopodin 2 isoform b FLJ22184 0.041 PREDICTED: hypothetical protein FLJ22184 MLL2 0.039 myeloid/lymphoid or mixed-lineage leukemia 2 PCLO 0.038 piccolo isoform 2 PCLO 0.038 piccolo isoform 1 WIPF1 0.035 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.035 WAS/WASL interacting protein family, member 1 PRG4 0.034 proteoglycan 4 isoform D PRG4 0.034 proteoglycan 4 isoform C PRG4 0.034 proteoglycan 4 isoform B PRG4 0.034 proteoglycan 4 isoform A C6orf132 0.033 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.033 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.033 PREDICTED: hypothetical protein LOC647024 FMN2 0.032 formin 2 POLR2A 0.032 DNA-directed RNA polymerase II A SRRM1 0.032 serine/arginine repetitive matrix 1 MYPOP 0.030 Myb protein P42POP ZNF828 0.030 zinc finger protein 828 RERE 0.029 atrophin-1 like protein isoform a RERE 0.029 atrophin-1 like protein isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.