Guide to the Human Genome
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Name: LOC100131830 Sequence: fasta or formatted (219aa) NCBI GI: 169204828
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {220aa} PREDICTED: hypothetical protein
alt mRNA {219aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         14           2
 C cysteine            9.6         21          13
 D aspartate           0.9          2           1
 E glutamate           2.7          6           2
 F phenylalanine       4.1          9           3
 G glycine             7.8         17           2
 H histidine           1.8          4           1
 I isoleucine          2.7          6           1
 K lysine              2.3          5           1
 L leucine            12.8         28           3
 M methionine          1.8          4           1
 N asparagine          0.9          2           2
 P proline            11.0         24           2
 Q glutamine           2.7          6           1
 R arginine            5.9         13           1
 S serine             15.5         34           3
 T threonine           4.1          9           2
 V valine              3.7          8           1
 W tryptophan          1.4          3           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131830          1.000   PREDICTED: hypothetical protein 
LOC100131830          0.991   PREDICTED: hypothetical protein 
IGSF5                 0.041   immunoglobulin superfamily 5 like 
DNAJC5                0.036   DnaJ (Hsp40) homolog, subfamily C, member 5 
DNAJC5G               0.034   DnaJ (Hsp40) homolog, subfamily C, member 5 gamma [H...
DNAJC5B               0.034   DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Ho...
KRTAP5-6              0.034   keratin associated protein 5-6 
SLC34A2               0.034   solute carrier family 34 (sodium phosphate), member...
KRTAP5-1              0.032   keratin associated protein 5-1 
KRTAP5-8              0.032   keratin associated protein 5-8 
KRTAP5-4              0.032   keratin associated protein 5-4 
KRTAP17-1             0.032   keratin associated protein 17-1 
KRTAP5-5              0.029   keratin associated protein 5-5 
KRTAP5-10             0.029   keratin associated protein 5-10 
CECR6                 0.027   cat eye syndrome chromosome region, candidate 6 isof...
KRTAP5-7              0.027   keratin associated protein 5-7 
C9orf169              0.027   hypothetical protein LOC375791 
KRTAP5-11             0.027   keratin associated protein 5-11 
RGS19                 0.027   G protein signalling regulator 19 
RGS19                 0.027   G protein signalling regulator 19 
KRTAP5-2              0.027   keratin associated protein 5-2 
KRTAP5-3              0.025   keratin associated protein 5-3 
RGS17                 0.023   regulator of G-protein signalling 17 
KRTAP5-9              0.023   keratin associated protein 5-9 
CLCN6                 0.023   chloride channel 6 isoform ClC-6a 
CLCN6                 0.023   chloride channel 6 isoform ClC-6d 
CLCN6                 0.023   chloride channel 6 isoform ClC-6b 
CLCN6                 0.023   chloride channel 6 isoform ClC-6c 
RGS20                 0.020   regulator of G-protein signaling 20 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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