Guide to the Human Genome
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Name: C9orf169 Sequence: fasta or formatted (144aa) NCBI GI: 39752687
Description:

hypothetical protein LOC375791

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         11           2
 C cysteine           11.8         17           4
 D aspartate           2.8          4           2
 E glutamate           3.5          5           1
 F phenylalanine       0.7          1           1
 G glycine             7.6         11           1
 H histidine           5.6          8           2
 I isoleucine          3.5          5           1
 K lysine              2.1          3           1
 L leucine             4.9          7           2
 M methionine          2.1          3           1
 N asparagine          2.8          4           1
 P proline            14.6         21           3
 Q glutamine           9.0         13           2
 R arginine            3.5          5           1
 S serine              7.6         11           4
 T threonine           2.8          4           1
 V valine              4.9          7           2
 W tryptophan          0.7          1           1
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC375791 
SLC34A2               0.049   solute carrier family 34 (sodium phosphate), member...
ARSA                  0.046   arylsulfatase A isoform a precursor 
ARSA                  0.046   arylsulfatase A isoform a precursor 
ARSA                  0.046   arylsulfatase A isoform b 
ARSA                  0.046   arylsulfatase A isoform a precursor 
ARSA                  0.046   arylsulfatase A isoform a precursor 
LOC100131830          0.043   PREDICTED: hypothetical protein 
LOC100131830          0.039   PREDICTED: hypothetical protein 
LOC100131830          0.039   PREDICTED: hypothetical protein 
KRTAP5-9              0.036   keratin associated protein 5-9 
EP300                 0.033   E1A binding protein p300 
OGFR                  0.033   opioid growth factor receptor 
KRTAP4-8              0.033   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.033   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-11             0.033   keratin associated protein 4-11 
KRTAP5-4              0.033   keratin associated protein 5-4 
KRTAP4-9              0.030   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-9              0.030   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.030   keratin associated protein 4-9 
COL19A1               0.030   alpha 1 type XIX collagen precursor 
KRTAP1-5              0.030   keratin associated protein 1.5 
KRTAP12-4             0.030   keratin associated protein 12-4 
DNAJC5                0.030   DnaJ (Hsp40) homolog, subfamily C, member 5 
KRTAP5-10             0.030   keratin associated protein 5-10 
KRTAP5-7              0.030   keratin associated protein 5-7 
KRTAP5-3              0.030   keratin associated protein 5-3 
KRTAP5-11             0.030   keratin associated protein 5-11 
KRTAP5-8              0.030   keratin associated protein 5-8 
KRTAP4-8              0.026   PREDICTED: keratin associated protein 4-8 isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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