Guide to the Human Genome
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Name: LOC154860 Sequence: fasta or formatted (137aa) NCBI GI: 169171120
Description:

PREDICTED: hypothetical protein LOC154860

Not currently referenced in the text

Other entries for this name:
alt mRNA {137aa} PREDICTED: hypothetical protein LOC154860
alt prot {125aa} PREDICTED: hypothetical protein LOC154860
alt mRNA {137aa} PREDICTED: hypothetical protein LOC154860
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         21           3
 C cysteine            4.4          6           1
 D aspartate           2.2          3           1
 E glutamate           3.6          5           1
 F phenylalanine       1.5          2           1
 G glycine             8.0         11           2
 H histidine           2.9          4           1
 I isoleucine          1.5          2           1
 K lysine              2.9          4           1
 L leucine             6.6          9           1
 M methionine          0.7          1           1
 N asparagine          2.2          3           1
 P proline            12.4         17           2
 Q glutamine           5.1          7           1
 R arginine            7.3         10           2
 S serine              8.8         12           2
 T threonine           5.1          7           1
 V valine              8.0         11           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC154860 
LOC154860             1.000   PREDICTED: hypothetical protein LOC154860 
LOC154860             1.000   PREDICTED: hypothetical protein LOC154860 
INHBB                 0.023   inhibin beta B subunit preproprotein 
FOXE1                 0.019   forkhead box E1 
LOC100293319          0.015   PREDICTED: hypothetical protein 
LOC100291551          0.015   PREDICTED: hypothetical protein XP_002346445 
LOC100288901          0.015   PREDICTED: hypothetical protein XP_002342617 
KIAA0586              0.015   talpid3 protein 
C9orf140              0.015   tumor specificity and mitosis phase-dependent expre...
ITSN1                 0.011   intersectin 1 isoform ITSN-s 
ITSN1                 0.011   intersectin 1 isoform ITSN-l 
KAT                   0.011   putative thiosulfate sulfurtransferase KAT isoform ...
KAT                   0.011   putative thiosulfate sulfurtransferase KAT isoform ...
FAM48B1               0.011   hypothetical protein LOC100130302 
ZFP36L2               0.011   zinc finger protein 36, C3H type-like 2 
SPG20                 0.011   spartin 
SPG20                 0.011   spartin 
SPG20                 0.011   spartin 
SPG20                 0.011   spartin 
STOM                  0.011   stomatin isoform a 
FAM149A               0.008   hypothetical protein LOC25854 
FAM149A               0.008   hypothetical protein LOC25854 
SEPT9                 0.008   septin 9 isoform b 
SEPT9                 0.008   septin 9 isoform a 
SEPT9                 0.008   septin 9 isoform c 
LDB3                  0.008   LIM domain binding 3 isoform 1 
SLC4A5                0.008   sodium bicarbonate transporter 4 isoform a 
SLC4A5                0.008   sodium bicarbonate transporter 4 isoform c 
KLF10                 0.008   Kruppel-like factor 10 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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