Guide to the Human Genome
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Name: KIAA0586 Sequence: fasta or formatted (1472aa) NCBI GI: 154813197
Description:

talpid3 protein

Referenced in:

Hedgehog and Related Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         85           3
 C cysteine            1.2         17           1
 D aspartate           5.6         83           2
 E glutamate           8.0        118           3
 F phenylalanine       2.3         34           1
 G glycine             3.7         55           2
 H histidine           1.9         28           1
 I isoleucine          4.7         69           2
 K lysine              7.5        110           4
 L leucine             8.6        126           2
 M methionine          2.9         42           1
 N asparagine          3.9         57           3
 P proline             8.6        127           4
 Q glutamine           5.8         86           4
 R arginine            3.1         46           2
 S serine             10.6        156           2
 T threonine           6.8        100           3
 V valine              7.3        108           2
 W tryptophan          0.3          5           1
 Y tyrosine            1.4         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   talpid3 protein 
KIAA0754              0.013   hypothetical protein LOC643314 
TTN                   0.012   titin isoform N2-A 
MLL2                  0.010   myeloid/lymphoid or mixed-lineage leukemia 2 
PRG4                  0.010   proteoglycan 4 isoform D 
PRG4                  0.010   proteoglycan 4 isoform C 
PRG4                  0.010   proteoglycan 4 isoform B 
PRG4                  0.010   proteoglycan 4 isoform A 
FSCB                  0.010   fibrous sheath CABYR binding protein 
PCLO                  0.009   piccolo isoform 2 
PCLO                  0.009   piccolo isoform 1 
ZNF828                0.009   zinc finger protein 828 
SETD1B                0.009   SET domain containing 1B 
GOLGB1                0.009   golgi autoantigen, golgin subfamily b, macrogolgin ...
FLJ22184              0.008   PREDICTED: hypothetical protein LOC80164 
NACA                  0.008   nascent polypeptide-associated complex alpha subuni...
LOC100294420          0.008   PREDICTED: similar to mucin 2 
KDM6B                 0.008   lysine (K)-specific demethylase 6B 
SPZ1                  0.008   spermatogenic leucine zipper 1 
BCORL1                0.008   BCL6 co-repressor-like 1 
KTN1                  0.007   kinectin 1 isoform a 
KTN1                  0.007   kinectin 1 isoform c 
KTN1                  0.007   kinectin 1 isoform a 
SRCAP                 0.007   Snf2-related CBP activator protein 
CCDC18                0.007   sarcoma antigen NY-SAR-41 
KTN1                  0.007   kinectin 1 isoform b 
MUC2                  0.007   mucin 2 precursor 
RAPH1                 0.007   Ras association and pleckstrin homology domains 1 is...
LOC100134147          0.007   PREDICTED: hypothetical protein 
DGKK                  0.007   diacylglycerol kinase kappa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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