ALMS1 645

Name: ALMS1	Sequence: fasta or formatted (4169aa)		NCBI GI: 110349786
Description: Alstrom syndrome 1		Referenced in: Planar Cell Polarity
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 229 7 C cysteine 1.0 42 1 D aspartate 5.0 209 3 E glutamate 8.2 340 17 F phenylalanine 3.1 128 2 G glycine 4.7 196 3 H histidine 3.4 143 2 I isoleucine 4.3 179 3 K lysine 6.6 276 3 L leucine 7.6 315 3 M methionine 0.9 38 2 N asparagine 3.2 134 2 P proline 7.7 321 2 Q glutamine 6.2 259 3 R arginine 4.2 176 3 S serine 12.5 523 4 T threonine 7.2 300 3 V valine 5.9 246 4 W tryptophan 0.6 24 1 Y tyrosine 2.2 91 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Alstrom syndrome 1 MUC12 0.012 PREDICTED: mucin 12 MUC12 0.010 PREDICTED: mucin 12 MUC12 0.009 PREDICTED: mucin 12, cell surface associated MUC17 0.009 mucin 17 C10orf90 0.009 hypothetical protein LOC118611 MUC16 0.007 mucin 16 ZAN 0.006 zonadhesin isoform 3 ZAN 0.006 zonadhesin isoform 6 LOC100133714 0.006 PREDICTED: similar to Mucin-12, partial MUC6 0.005 mucin 6, gastric LOC100130716 0.005 PREDICTED: similar to mucin 11 MUC12 0.004 PREDICTED: mucin 12 LOC100130716 0.004 PREDICTED: similar to Mucin-12 ACAN 0.004 aggrecan isoform 2 precursor ACAN 0.004 aggrecan isoform 1 precursor PELP1 0.004 proline, glutamic acid and leucine rich protein 1 [... PCLO 0.004 piccolo isoform 2 PCLO 0.004 piccolo isoform 1 NACAD 0.003 PREDICTED: NAC alpha domain containing NACAD 0.003 PREDICTED: NAC alpha domain containing NACAD 0.003 PREDICTED: NAC alpha domain containing PRG4 0.003 proteoglycan 4 isoform D PRG4 0.003 proteoglycan 4 isoform C MUC5AC 0.003 mucin 5AC MUC5B 0.003 mucin 5, subtype B, tracheobronchial PPM1E 0.003 protein phosphatase 1E MLL2 0.003 myeloid/lymphoid or mixed-lineage leukemia 2 TTBK1 0.003 tau tubulin kinase 1 DCAF8L2 0.003 DDB1 and CUL4 associated factor 8-like 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.