Guide to the Human Genome
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Name: MUC5AC Sequence: fasta or formatted (6207aa) NCBI GI: 161019170
Description:

mucin 5AC

Referenced in:

Protein Composition and Structure
Mucins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4        519           6
 C cysteine            5.1        318           2
 D aspartate           3.0        185           2
 E glutamate           3.6        226           2
 F phenylalanine       2.6        164           2
 G glycine             7.3        455           3
 H histidine           2.3        145           2
 I isoleucine          2.2        135           2
 K lysine              2.0        126           2
 L leucine             6.3        390           3
 M methionine          1.2         75           1
 N asparagine          2.5        154           2
 P proline             9.1        565           3
 Q glutamine           3.5        217           2
 R arginine            3.8        237           2
 S serine             10.4        643           4
 T threonine          18.0       1116           7
 V valine              5.6        348           3
 W tryptophan          1.3         79           1
 Y tyrosine            1.8        110           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mucin 5AC 
MUC5B                 0.698   mucin 5, subtype B, tracheobronchial 
LOC100132635          0.154   PREDICTED: similar to mucin 5, partial 
MUC2                  0.124   mucin 2 precursor 
LOC100294420          0.086   PREDICTED: similar to mucin 2 
MUC6                  0.075   mucin 6, gastric 
VWF                   0.057   von Willebrand factor preproprotein 
LOC100291118          0.054   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.054   PREDICTED: hypothetical protein XP_002343203 
MUC17                 0.049   mucin 17 
MUC12                 0.045   PREDICTED: mucin 12 
SSPO                  0.045   SCO-spondin 
OTOG                  0.042   PREDICTED: otogelin isoform 1 
OTOG                  0.042   PREDICTED: otogelin isoform 2 
OTOG                  0.042   PREDICTED: otogelin isoform 2 
OTOG                  0.042   PREDICTED: otogelin isoform 1 
OTOG                  0.042   PREDICTED: otogelin isoform 2 
OTOG                  0.042   PREDICTED: otogelin isoform 1 
FCGBP                 0.042   Fc fragment of IgG binding protein 
MUC4                  0.041   mucin 4 isoform a 
LOC100293983          0.040   PREDICTED: similar to mucin, partial 
C12orf64              0.039   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.039   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.039   PREDICTED: hypothetical protein LOC283310 
MUC16                 0.030   mucin 16 
LOC100290309          0.029   PREDICTED: hypothetical protein XP_002348012 
LOC729792             0.026   PREDICTED: hypothetical protein 
LOC100294136          0.026   PREDICTED: hypothetical protein 
LOC100294091          0.026   PREDICTED: hypothetical protein 
LOC100294501          0.026   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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