Guide to the Human Genome
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Name: PLSCR2 Sequence: fasta or formatted (224aa) NCBI GI: 9966795
Description:

phospholipid scramblase 2

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          9           2
 C cysteine            7.1         16           4
 D aspartate           4.9         11           1
 E glutamate           6.7         15           1
 F phenylalanine       6.7         15           2
 G glycine             5.4         12           1
 H histidine           1.3          3           1
 I isoleucine          9.4         21           1
 K lysine              3.6          8           1
 L leucine             7.6         17           2
 M methionine          2.7          6           1
 N asparagine          4.0          9           1
 P proline             7.1         16           4
 Q glutamine           4.5         10           2
 R arginine            6.2         14           1
 S serine              4.9         11           2
 T threonine           4.9         11           1
 V valine              5.8         13           2
 W tryptophan          0.9          2           1
 Y tyrosine            2.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipid scramblase 2 
PLSCR1                0.853   phospholipid scramblase 1 
PLSCR5                0.607   phospholipid scramblase family, member 5 
PLSCR3                0.516   phospholipid scramblase 3 
PLSCR4                0.480   phospholipid scramblase 4 isoform a 
PLSCR4                0.480   phospholipid scramblase 4 isoform a 
PLSCR4                0.480   phospholipid scramblase 4 isoform a 
PLSCR4                0.224   phospholipid scramblase 4 isoform b 
LOC440981             0.158   PREDICTED: similar to hCG1794790 
LOC440981             0.149   PREDICTED: similar to hCG1794790 
LOC440981             0.149   PREDICTED: similar to hCG1794790 
ILDR1                 0.016   immunoglobulin-like domain containing receptor 1 [Ho...
FAM84A                0.011   family with sequence similarity 84, member A 
KRTAP2-1              0.007   keratin associated protein KRTAP2.1A 
KRTAP2-4              0.007   keratin associated protein 2-4 
KRTAP2-2              0.007   keratin associated protein 2-2 
LOC730755             0.007   PREDICTED: similar to keratin associated protein 2-...
C9orf169              0.007   hypothetical protein LOC375791 
TMEM121               0.007   hole protein 
SLC45A1               0.007   DNB5 
USP6                  0.007   ubiquitin specific protease 6 
OSTalpha              0.007   organic solute transporter alpha 
TGFB3                 0.007   transforming growth factor, beta 3 
ZNF616                0.007   zinc finger protein 616 
ZNF570                0.007   zinc finger protein 570 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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