Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PLSCR3 Sequence: fasta or formatted (295aa) NCBI GI: 31543417
Description:

phospholipid scramblase 3

Referenced in:

Mitochondria
Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         26           2
 C cysteine            4.4         13           2
 D aspartate           4.4         13           2
 E glutamate           5.1         15           2
 F phenylalanine       4.4         13           2
 G glycine            10.5         31           2
 H histidine           1.7          5           1
 I isoleucine          2.4          7           1
 K lysine              2.4          7           1
 L leucine            10.5         31           2
 M methionine          1.0          3           1
 N asparagine          1.0          3           1
 P proline            12.5         37           4
 Q glutamine           4.7         14           1
 R arginine            6.4         19           2
 S serine              4.4         13           1
 T threonine           4.7         14           2
 V valine              7.1         21           2
 W tryptophan          1.4          4           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipid scramblase 3 
PLSCR1                0.444   phospholipid scramblase 1 
PLSCR2                0.386   phospholipid scramblase 2 
PLSCR5                0.368   phospholipid scramblase family, member 5 
PLSCR4                0.293   phospholipid scramblase 4 isoform a 
PLSCR4                0.293   phospholipid scramblase 4 isoform a 
PLSCR4                0.293   phospholipid scramblase 4 isoform a 
PLSCR4                0.173   phospholipid scramblase 4 isoform b 
LOC440981             0.092   PREDICTED: similar to hCG1794790 
LOC440981             0.092   PREDICTED: similar to hCG1794790 
LOC440981             0.088   PREDICTED: similar to hCG1794790 
SETD1B                0.045   SET domain containing 1B 
DIAPH1                0.038   diaphanous 1 isoform 2 
DIAPH1                0.038   diaphanous 1 isoform 1 
TBC1D10B              0.038   TBC1 domain family, member 10B 
RBM27                 0.038   RNA binding motif protein 27 
LDB3                  0.037   LIM domain binding 3 isoform 2 
LDB3                  0.037   LIM domain binding 3 isoform 1 
PTPN23                0.037   protein tyrosine phosphatase, non-receptor type 23 [...
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform a 
ZFPM1                 0.035   zinc finger protein, multitype 1 
TPRX1                 0.033   tetra-peptide repeat homeobox 
CPSF6                 0.033   cleavage and polyadenylation specific factor 6, 68 ...
ESX1                  0.033   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
WASL                  0.033   Wiskott-Aldrich syndrome gene-like protein 
ANXA11                0.032   annexin A11 
ANXA11                0.032   annexin A11 
ANXA11                0.032   annexin A11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press