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Search of human proteins with 88900495
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88900495 HCF-binding transcription factor Zhangfei [Homo
sapiens]
(354 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|88900495 HCF-binding transcription factor Zhangfei [Homo sapi... 696 0.0
gi|209954788 activating transcription factor 6 beta isoform b [H... 50 4e-06
gi|20631977 activating transcription factor 6 beta isoform a [Ho... 50 4e-06
gi|18702325 cAMP responsive element binding protein 3-like 4 [Ho... 49 9e-06
gi|46852390 coiled-coil domain containing 6 [Homo sapiens] 48 2e-05
gi|126723390 ankyrin repeat domain 24 [Homo sapiens] 46 6e-05
gi|14211949 cAMP responsive element binding protein 3-like 3 [Ho... 45 1e-04
gi|56786157 activating transcription factor 6 [Homo sapiens] 43 4e-04
gi|19913396 smoothelin isoform b [Homo sapiens] 43 5e-04
gi|19913394 smoothelin isoform c [Homo sapiens] 43 5e-04
gi|19913398 smoothelin isoform a [Homo sapiens] 43 5e-04
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 42 6e-04
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 41 0.002
gi|55956910 meningioma 1 [Homo sapiens] 40 0.002
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 40 0.003
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 40 0.003
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 40 0.003
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 40 0.004
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 39 0.009
gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens] 39 0.009
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 39 0.009
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 39 0.009
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 39 0.009
gi|7657575 sirtuin 1 isoform a [Homo sapiens] 38 0.012
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 38 0.012
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 38 0.012
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens] 38 0.016
gi|113426339 PREDICTED: hypothetical protein [Homo sapiens] 38 0.016
gi|113426005 PREDICTED: hypothetical protein [Homo sapiens] 38 0.016
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 37 0.021
>gi|88900495 HCF-binding transcription factor Zhangfei [Homo
sapiens]
Length = 354
Score = 696 bits (1795), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MRHSLTKLLAASGSNSPTRSESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDE 60
MRHSLTKLLAASGSNSPTRSESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDE
Sbjct: 1 MRHSLTKLLAASGSNSPTRSESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDE 60
Query: 61 GELEAGRGSRGGVAVRAPSPEEMEEEAIASLPGEETEDMDFLSGLELADLLDPRQPDWHL 120
GELEAGRGSRGGVAVRAPSPEEMEEEAIASLPGEETEDMDFLSGLELADLLDPRQPDWHL
Sbjct: 61 GELEAGRGSRGGVAVRAPSPEEMEEEAIASLPGEETEDMDFLSGLELADLLDPRQPDWHL 120
Query: 121 DPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSG 180
DPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSG
Sbjct: 121 DPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSG 180
Query: 181 SAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGLESRVRGLA 240
SAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGLESRVRGLA
Sbjct: 181 SAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGLESRVRGLA 240
Query: 241 AENQELRAENRELGKRVQALQEESRYLRAVLANETGLARLLSRLSGVGLRLTTSLFRDSP 300
AENQELRAENRELGKRVQALQEESRYLRAVLANETGLARLLSRLSGVGLRLTTSLFRDSP
Sbjct: 241 AENQELRAENRELGKRVQALQEESRYLRAVLANETGLARLLSRLSGVGLRLTTSLFRDSP 300
Query: 301 AGDHDYALPVGKQKQDLLEEDDSAGGVCLHVDKDKVSVEFCSACARKASSSLKM 354
AGDHDYALPVGKQKQDLLEEDDSAGGVCLHVDKDKVSVEFCSACARKASSSLKM
Sbjct: 301 AGDHDYALPVGKQKQDLLEEDDSAGGVCLHVDKDKVSVEFCSACARKASSSLKM 354
>gi|209954788 activating transcription factor 6 beta isoform b [Homo
sapiens]
Length = 700
Score = 49.7 bits (117), Expect = 4e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 221 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 268
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ L+
Sbjct: 339 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELK 386
>gi|20631977 activating transcription factor 6 beta isoform a [Homo
sapiens]
Length = 703
Score = 49.7 bits (117), Expect = 4e-06
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 221 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 268
+R KKKEY+ GLE+R++ + A+NQ+LR EN L +R++AL E+ L+
Sbjct: 342 SRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELK 389
>gi|18702325 cAMP responsive element binding protein 3-like 4 [Homo
sapiens]
Length = 395
Score = 48.5 bits (114), Expect = 9e-06
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 217 AARLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLANETG 276
+A+ +R +KKEY+ GLESRV +A+NQEL+ + +EL + +L + R L+ ++A +
Sbjct: 230 SAQDSRRRKKEYIDGLESRVAACSAQNQELQKKVQELERHNISLVAQLRQLQTLIAQTSN 289
Query: 277 LAR-----LLSRLSGVGLRLTTSL--FRDSP-AGDHDYALPVGKQKQDLLEEDD 322
A +L L + L + S F+ P AG DY P G +++L D
Sbjct: 290 KAAQTSTCVLILLFSLALIILPSFSPFQSRPEAGSEDYQ-PHGVTSRNILTHKD 342
>gi|46852390 coiled-coil domain containing 6 [Homo sapiens]
Length = 474
Score = 47.8 bits (112), Expect = 2e-05
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 168 NGIGGCSSSSDSGSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAARLNRLKKKE 227
+G GG SSSS + + GGGGGGG G + SP + RL L+++
Sbjct: 11 DGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELTNRLASLQQEN 70
Query: 228 YVMGLE-----SRVRGLAAENQEL---------RAENRE------LGKRVQALQEESRYL 267
V+ +E + + L EN++L RAE E L K++QALQ+E L
Sbjct: 71 KVLKIELETYKLKCKALQEENRDLRKASVTIQARAEQEEEFISNTLFKKIQALQKEKETL 130
>gi|126723390 ankyrin repeat domain 24 [Homo sapiens]
Length = 1146
Score = 45.8 bits (107), Expect = 6e-05
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 18/168 (10%)
Query: 122 PGLSSPGPLSSSGGGSDSGGLW-------RGDDDDEAAAAEMQRFSDLLQRLLNGIGGCS 174
PG+S+ GP+ G S L RG ++ A QR + L +G C
Sbjct: 702 PGISA-GPILHPGAAEASEKLQVELETRIRGLEE-----ALRQREREAAAELEAALGKCE 755
Query: 175 SS-SDSGSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGL- 232
++ +++G +R R++ G G GG G D Q + R +RL++ E
Sbjct: 756 AAEAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAREDLRDRDSRLRELEAASACL 815
Query: 233 -ESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLANETGLAR 279
E+R L AE +E R EL +R +A E+SR L VL + AR
Sbjct: 816 DEARASRLLAE-EEARGLRAELAQREEARLEQSRELE-VLREQLATAR 861
>gi|14211949 cAMP responsive element binding protein 3-like 3 [Homo
sapiens]
Length = 461
Score = 45.1 bits (105), Expect = 1e-04
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 217 AARLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLANET 275
+A+ +R KKKEY+ GLE+R+ A+NQEL+ + L K+ +L E+ + L+A++ T
Sbjct: 256 SAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQNLSLLEQLKKLQAIVVQST 314
>gi|56786157 activating transcription factor 6 [Homo sapiens]
Length = 670
Score = 43.1 bits (100), Expect = 4e-04
Identities = 18/48 (37%), Positives = 35/48 (72%)
Query: 221 NRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLR 268
+R KKKEY++GLE+R++ +EN++L+ EN L +++ + E++ L+
Sbjct: 323 SRKKKKEYMLGLEARLKAALSENEQLKKENGTLKRQLDEVVSENQRLK 370
>gi|19913396 smoothelin isoform b [Homo sapiens]
Length = 915
Score = 42.7 bits (99), Expect = 5e-04
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 16 SPTRSESPEPAATCSLPSD----LTRAAAGEEETAAAGSPGRKQQFGDEGELEAGRGSRG 71
SP ++ SPEP + +LPS + + +G +ET AA SP R ++ R +
Sbjct: 239 SPPKTTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQR 298
Query: 72 GVAVRAPSPEEMEEEA--IASLPG-------------EETEDMDFLSGLELAD---LLDP 113
++V +P E+ +AS P + T D + L+ L P
Sbjct: 299 SLSVLSPRQPAQNRESTPLASGPSSFQRAGSVRDRVHKFTSDSPMAARLQDGTPQAALSP 358
Query: 114 RQPDWHLDPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQR 158
P L P L+S P SSS G S RG D + ++ QR
Sbjct: 359 LTPARLLGPSLTSTTPASSSSGSSS-----RGPSDTSSRFSKEQR 398
>gi|19913394 smoothelin isoform c [Homo sapiens]
Length = 917
Score = 42.7 bits (99), Expect = 5e-04
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 16 SPTRSESPEPAATCSLPSD----LTRAAAGEEETAAAGSPGRKQQFGDEGELEAGRGSRG 71
SP ++ SPEP + +LPS + + +G +ET AA SP R ++ R +
Sbjct: 239 SPPKTTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQSPTRGPSDTKRADVAGPRPCQR 298
Query: 72 GVAVRAPSPEEMEEEA--IASLPG-------------EETEDMDFLSGLELAD---LLDP 113
++V +P E+ +AS P + T D + L+ L P
Sbjct: 299 SLSVLSPRQPAQNRESTPLASGPSSFQRAGSVRDRVHKFTSDSPMAARLQDGTPQAALSP 358
Query: 114 RQPDWHLDPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQR 158
P L P L+S P SSS G S RG D + ++ QR
Sbjct: 359 LTPARLLGPSLTSTTPASSSSGSSS-----RGPSDTSSRFSKEQR 398
>gi|19913398 smoothelin isoform a [Homo sapiens]
Length = 940
Score = 42.7 bits (99), Expect = 5e-04
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 16 SPTRSESPEPAATCSLPSD----LTRAAAGEEETAAAGSPGRKQQFGDEGELEAGRGSRG 71
SP ++ SPEP + +LPS + + +G +ET AA SP R ++ R +
Sbjct: 239 SPPKTTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQSPHRGPSDTKRADVAGPRPCQR 298
Query: 72 GVAVRAPSPEEMEEEA--IASLPG-------------EETEDMDFLSGLELAD---LLDP 113
++V +P E+ +AS P + T D + L+ L P
Sbjct: 299 SLSVLSPRQPAQNRESTPLASGPSSFQRAGSVRDRVHKFTSDSPMAARLQDGTPQAALSP 358
Query: 114 RQPDWHLDPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQR 158
P L P L+S P SSS G S RG D + ++ QR
Sbjct: 359 LTPARLLGPSLTSTTPASSSSGSSS-----RGPSDTSSRFSKEQR 398
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 42.4 bits (98), Expect = 6e-04
Identities = 67/250 (26%), Positives = 91/250 (36%), Gaps = 38/250 (15%)
Query: 7 KLLAASGSNSPTRSESPEPAATCSLPSDL--TRAAAG---EEETAAAGSPGRKQQFGDEG 61
+L S R++SP SL + TR+ G + + ++QQ G++
Sbjct: 26 RLHPEGSSRKQQRAQSPARPRDSSLRQTIAATRSPVGAGTKLNSVRQQQLQQQQQQGNKT 85
Query: 62 ELEAG-----RGSRGGVAVRAP-SPEEMEEEAIASLPGEETEDMDFLSGLELADLLDPRQ 115
G RG GG P +P+ A+ + G E L+ L P +
Sbjct: 86 GSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPEE 145
Query: 116 PDWHLDP---GLSSPGPLS-SSGGGSDSGGLWRGDDDDEAAAAE-------MQRFSDLLQ 164
P L+ L P PL GGG + GG G + E A + + Q
Sbjct: 146 PPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQ 205
Query: 165 RLLNGIGGCSSSSDSGSAEKR----RRKSPGGGGGGGSGNDNN------------QAATK 208
R +G G S S S SA K R S G GGGSG + Q K
Sbjct: 206 RGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGSYWKEGCLQSELIQFHLK 265
Query: 209 SPRKAAAAAA 218
R AAAAAA
Sbjct: 266 KERAAAAAAA 275
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 26/212 (12%)
Query: 39 AAGEEETAAAGSPGRKQQFGDEGELEAGRGS--RGGVAVRAPSPEEMEEEAIASLPGEET 96
A EE +A G G + D G +E G + G+A+ + E+E A++ P E
Sbjct: 948 ALRSEEFSAGGELGLELA-SDGGAVEEGARAPLENGLALSGLNGAEIEGSALSGAPRETP 1006
Query: 97 EDM---DFLSGLELAD------LLDPR-------QPDWHLDPGLSS----PGPLSSSGGG 136
+M +G LAD L+P P H PG P LS G
Sbjct: 1007 SEMATNSLPNGPALADGPAPVSPLEPSPEKVATISPRRHAMPGSRPRSRIPVLLSEEDTG 1066
Query: 137 SDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNG---IGGCSSSSDSGSAEKRRRKSPGGG 193
S+ G + A Q + L+ G + S +S S S E+RR G
Sbjct: 1067 SEPSGSLSAKERWSKRARPQQDLARLVMEKRQGRLLLRLASGASSSSSEEQRRASETLSG 1126
Query: 194 GGGGSGNDNNQAATKSPRKAAAAAARLNRLKK 225
G ++ A PRK+ AAA +R+ +
Sbjct: 1127 TGSEEDTPASEPAAALPRKSGRAAATRSRIPR 1158
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 8 LLAASGSNSPTRSESPEPAATCSL---PSDLTRAAAGEEETAAAGSPGRK--QQFGDEGE 62
L A G + P+ + P P + L P GE A SPG + G G+
Sbjct: 652 LPADCGPHDPSLAPPPPPGGSGVLFRGPLQEPMRMPGEGHVPALPSPGLQFGGSLGGLGQ 711
Query: 63 LE---AGRGSRGGVAVRAPSPEEMEEEAIASLPGEETEDMDFLSGLELADLLDPRQPDWH 119
L+ AG G + R P P + A+ PG F G RQ H
Sbjct: 712 LQSPGAGVGLPSAASERRPPPPDFATSALGGQPG-------FPFGAA------GRQSTPH 758
Query: 120 LDPGLSSPGPLSSSGGGSDSGG 141
PG++SP P + GGGS GG
Sbjct: 759 SGPGVNSP-PSAGGGGGSSGGG 779
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 11 ASGSNSPTRSESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDEGELEAGRGSR 70
A+G+ +P+R +PEPAA + AG EE PG G+ GE AG G
Sbjct: 50 ATGAPAPSRPCAPEPAA----------SPAGPEE------PGEPAGLGELGE-PAGPGEP 92
Query: 71 GGVAVRAPSPEEMEEEAIASLPGEETEDMD 100
G A +P E EE+A+ + EE +D+D
Sbjct: 93 EGPGDPAAAPAEAEEQAVEARQ-EEEQDLD 121
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 11 ASGSNSPTRSESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDEGELEAGRGSR 70
A+G+ +P+R +PEPAA + AG EE PG G+ GE AG G
Sbjct: 50 ATGAPAPSRPCAPEPAA----------SPAGPEE------PGEPAGLGELGE-PAGPGEP 92
Query: 71 GGVAVRAPSPEEMEEEAIASLPGEETEDMD 100
G A +P E EE+A+ + EE +D+D
Sbjct: 93 EGPGDPAAAPAEAEEQAVEARQ-EEEQDLD 121
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 11 ASGSNSPTRSESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDEGELEAGRGSR 70
A+G+ +P+R +PEPAA + AG EE PG G+ GE AG G
Sbjct: 50 ATGAPAPSRPCAPEPAA----------SPAGPEE------PGEPAGLGELGE-PAGPGEP 92
Query: 71 GGVAVRAPSPEEMEEEAIASLPGEETEDMD 100
G A +P E EE+A+ + EE +D+D
Sbjct: 93 EGPGDPAAAPAEAEEQAVEARQ-EEEQDLD 121
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 39.7 bits (91), Expect = 0.004
Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 45/182 (24%)
Query: 35 LTRAAAGEEETAAAGS----PGRKQQFGDEGELEAGRGSRGGVA--VRAPSPEEMEEEAI 88
+ AAA AAG PGR++ EAG G+ GG EE+E E +
Sbjct: 1 MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEEL 60
Query: 89 ASLPGEETEDMDFLSGLELADLLDPRQPDWHLDPGLSSPGPLSSSGGG---SDSGGLWRG 145
P E E + +P +P PG PGP S + G + GL G
Sbjct: 61 LLEPEPEPEPEE-----------EPPRP--RAPPGAPGPGPGSGAPGSQEEEEEPGLVEG 107
Query: 146 DDDD-----------EAAAAEMQRFSDLLQRLLNGIGGCSSSSDSGSAEKRRRKSPGGGG 194
D D +A EM+ ++ L+ L N + EK+ SP G
Sbjct: 108 DPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEV------------EKQMNMSPPPGN 155
Query: 195 GG 196
G
Sbjct: 156 AG 157
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 38.5 bits (88), Expect = 0.009
Identities = 52/244 (21%), Positives = 85/244 (34%), Gaps = 61/244 (25%)
Query: 16 SPTRSESPEPAATCSLPSDLTRAAAGEEETAAAGSPGRKQQFGDEGELEAGRGSRGGVAV 75
+P S +P P T + A EE+ A G P R G+E EL G +
Sbjct: 2417 APATSLAPAPLITMPATRPKPKKARAAEESGAKG-PRRP---GEEAELLVKLDHEGVTSP 2472
Query: 76 RAPSPEE-------------MEEEAIASL--------------PGEETEDMDFLS----G 104
++ +E E +++ SL P + D D G
Sbjct: 2473 KSKKAKEALLLREDPGAGGWQEPKSLLSLGSYPPAAGSSEPKAPWPKATDGDLAQEPGPG 2532
Query: 105 LELADLLDPRQPDWHL----------DPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAA 154
L D +P+ PD SS G SSS S SG G+++ +
Sbjct: 2533 LTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDK--- 2589
Query: 155 EMQRFSDLLQRLLNGIGGCSSSSDSGSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAA 214
NG GGC + + SA R SP S + ++ +++ S ++
Sbjct: 2590 -------------NGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSS 2636
Query: 215 AAAA 218
++++
Sbjct: 2637 SSSS 2640
>gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens]
Length = 150
Score = 38.5 bits (88), Expect = 0.009
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 167 LNGIGGCSSSSDSGSAEKRRRKSPGGGGGGG------------SGNDNNQAATKSPRKAA 214
+NGI + + + ++ + P G GGGG S D N + R+
Sbjct: 13 VNGISVIHTQAHASGLQQVPQLVPAGPGGGGKAVAPSKQSKKSSPMDRNSDEYRQRRERN 72
Query: 215 AAAARLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQE 262
A + +RLK K+ RV L EN+ L A+ + L K + L++
Sbjct: 73 NMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKD 120
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 38.5 bits (88), Expect = 0.009
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 122 PGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSGS 181
PG S PG GGG GG G A G GG + + + +
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGA----------------GAGGAGAGAVAAA 284
Query: 182 AEKRRRKSPGGGGGGGSGNDNNQAATKSPRK 212
A + GGGGGG G+ SPR+
Sbjct: 285 AAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQ 315
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 169 GIGGCSSSSDSGSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAA 218
G GG G S GGGGGGG+G A + AAAAAA
Sbjct: 247 GAGGGGGGGGGGGGG-----SGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Score = 29.6 bits (65), Expect = 4.3
Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 128 GPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSGSAEKRRR 187
GP GG S G+ AAAA D LQ G + G +
Sbjct: 191 GPCFDQHGGQQSPGMGMMHSAS-AAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAG 249
Query: 188 KSPGGGGGGGSGNDNNQAATKSPRKAAAAAA 218
GGGGGGG G+ + A A A
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 38.5 bits (88), Expect = 0.009
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 122 PGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSGS 181
PG S PG GGG GG G A G GG + + + +
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGA----------------GAGGAGAGAVAAA 284
Query: 182 AEKRRRKSPGGGGGGGSGNDNNQAATKSPRK 212
A + GGGGGG G+ SPR+
Sbjct: 285 AAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQ 315
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 169 GIGGCSSSSDSGSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAA 218
G GG G S GGGGGGG+G A + AAAAAA
Sbjct: 247 GAGGGGGGGGGGGGG-----SGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Score = 29.6 bits (65), Expect = 4.3
Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 128 GPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSGSAEKRRR 187
GP GG S G+ AAAA D LQ G + G +
Sbjct: 191 GPCFDQHGGQQSPGMGMMHSAS-AAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAG 249
Query: 188 KSPGGGGGGGSGNDNNQAATKSPRKAAAAAA 218
GGGGGGG G+ + A A A
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 38.5 bits (88), Expect = 0.009
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 122 PGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSGS 181
PG S PG GGG GG G A G GG + + + +
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGA----------------GAGGAGAGAVAAA 284
Query: 182 AEKRRRKSPGGGGGGGSGNDNNQAATKSPRK 212
A + GGGGGG G+ SPR+
Sbjct: 285 AAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQ 315
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 169 GIGGCSSSSDSGSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAA 218
G GG G S GGGGGGG+G A + AAAAAA
Sbjct: 247 GAGGGGGGGGGGGGG-----SGGGGGGGGAGAGGAGAGAVAAAAAAAAAA 291
Score = 29.6 bits (65), Expect = 4.3
Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 128 GPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSSSDSGSAEKRRR 187
GP GG S G+ AAAA D LQ G + G +
Sbjct: 191 GPCFDQHGGQQSPGMGMMHSAS-AAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAG 249
Query: 188 KSPGGGGGGGSGNDNNQAATKSPRKAAAAAA 218
GGGGGGG G+ + A A A
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
>gi|7657575 sirtuin 1 isoform a [Homo sapiens]
Length = 747
Score = 38.1 bits (87), Expect = 0.012
Identities = 47/170 (27%), Positives = 64/170 (37%), Gaps = 22/170 (12%)
Query: 24 EPAATCSLPSDLTRAAAGEEETAA--AGSPGRKQQFGDEGELEAGRGSRGGVAVRAPSPE 81
+ AA P AA + E A+ AG P RK+ D LE G GG A PE
Sbjct: 3 DEAALALQPGGSPSAAGADREAASSPAGEPLRKRPRRDGPGLERSPGEPGGAA-----PE 57
Query: 82 EMEEEAIASLPG-------EETEDMDFLSGLELADLLDPRQPDWHLDPGLSSPG---PLS 131
A PG E E +G E + PGL P PL+
Sbjct: 58 REVPAAARGCPGAAAAALWREAEAEAAAAGGEQEAQATAAAGEGDNGPGLQGPSREPPLA 117
Query: 132 SSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLL---QRLLNGIGGCSSSSD 178
+ D G++++EAAAA + +LL + + NG C S +
Sbjct: 118 DNLYDEDDDD--EGEEEEEAAAAAIGYRDNLLFGDEIITNGFHSCESDEE 165
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 38.1 bits (87), Expect = 0.012
Identities = 33/123 (26%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Query: 127 PGPLSSSGGGSDSGGLWRGDDDD-------EAAAAEMQRFSDLLQRLLNGIGGCSSSSDS 179
P P GGG GGL D + AAA +F L + S
Sbjct: 679 PSPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPL 738
Query: 180 GSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKA-AAAAARLNRLKKKEYVMGLESRVRG 238
++ + + GGGGGGG G + S L RL+ V+ L RV G
Sbjct: 739 SASPRDKHPGNGGGGGGGGGGAGGGGPSASNSLLYTGDLEALQRLQAGNVVLPLVHRVTG 798
Query: 239 LAA 241
A
Sbjct: 799 TLA 801
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 38.1 bits (87), Expect = 0.012
Identities = 33/123 (26%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Query: 127 PGPLSSSGGGSDSGGLWRGDDDD-------EAAAAEMQRFSDLLQRLLNGIGGCSSSSDS 179
P P GGG GGL D + AAA +F L + S
Sbjct: 660 PSPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPL 719
Query: 180 GSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKA-AAAAARLNRLKKKEYVMGLESRVRG 238
++ + + GGGGGGG G + S L RL+ V+ L RV G
Sbjct: 720 SASPRDKHPGNGGGGGGGGGGAGGGGPSASNSLLYTGDLEALQRLQAGNVVLPLVHRVTG 779
Query: 239 LAA 241
A
Sbjct: 780 TLA 782
>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 37.7 bits (86), Expect = 0.016
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 17 PTRSESPEPAATCSLPSDLTRAAAGEEETAAAG--SPGRK--------QQFGDEGELEAG 66
P + ESP A P R AGEE+ + SP R+ ++ DEGE +
Sbjct: 7 PKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEATSF 66
Query: 67 RGSRGGVAVRAPSPEEMEEEAIASLPGEET 96
G AP E+ EE+A+A+ P T
Sbjct: 67 PGPCAAHVAGAPEDEDDEEQAVAAAPHAHT 96
>gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 37.7 bits (86), Expect = 0.016
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 17 PTRSESPEPAATCSLPSDLTRAAAGEEETAAAG--SPGRK--------QQFGDEGELEAG 66
P + ESP A P R AGEE+ + SP R+ ++ DEGE +
Sbjct: 7 PKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEATSF 66
Query: 67 RGSRGGVAVRAPSPEEMEEEAIASLPGEET 96
G AP E+ EE+A+A+ P T
Sbjct: 67 PGPCAAHVAGAPEDEDDEEQAVAAAPHAHT 96
>gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 37.7 bits (86), Expect = 0.016
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 17 PTRSESPEPAATCSLPSDLTRAAAGEEETAAAG--SPGRK--------QQFGDEGELEAG 66
P + ESP A P R AGEE+ + SP R+ ++ DEGE +
Sbjct: 7 PKKRESPPEPAAADTPLRRRRRRAGEEDGRSGFRLSPQRRTRRRERRGEREADEGEATSF 66
Query: 67 RGSRGGVAVRAPSPEEMEEEAIASLPGEET 96
G AP E+ EE+A+A+ P T
Sbjct: 67 PGPCAAHVAGAPEDEDDEEQAVAAAPHAHT 96
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 37.4 bits (85), Expect = 0.021
Identities = 60/256 (23%), Positives = 88/256 (34%), Gaps = 57/256 (22%)
Query: 9 LAASGSNSPTRSESPEPAATCSLPSDLTRAAAGE---------EETAAAGSPGRKQQ--- 56
L+ + ++S +PEPAA + PS A G + A G PGR +
Sbjct: 320 LSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKP 379
Query: 57 --------------------FGDEGELEAGRGSRGGVAVRAPSPEEMEEEAIASLPGEET 96
G G + G RG R S + E SL G +
Sbjct: 380 PPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRSQSE----TSLLGRAS 435
Query: 97 EDMDFLSGLELADLLDPRQPDWHLDPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEM 156
A+ +PR P P + L++ GS WR + +AA
Sbjct: 436 AVPSGPPKYPTAEREEPRPPRPRRGPAPT----LAAQAAGSCRR--WRSTAEIDAADGRR 489
Query: 157 QRF--------------SDLLQRLLNGIGGCSSSSDSGSAEKRRRKSPGGGGGGGSGNDN 202
R S +RLL G G S +G R+ P GG GGG G
Sbjct: 490 VRPRAPAARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESE 549
Query: 203 NQAAT-KSPRKAAAAA 217
+ A+ +SP ++A++
Sbjct: 550 SSASEGESPAFSSASS 565
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,303,609
Number of Sequences: 37866
Number of extensions: 835005
Number of successful extensions: 8890
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 6994
Number of HSP's gapped (non-prelim): 1637
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.