Guide to the Human Genome
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Name: ATF6 Sequence: fasta or formatted (670aa) NCBI GI: 56786157
Description:

activating transcription factor 6

Referenced in:

CREB / ATF Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         39           2
 C cysteine            0.7          5           1
 D aspartate           4.3         29           1
 E glutamate           6.0         40           2
 F phenylalanine       2.1         14           2
 G glycine             3.9         26           2
 H histidine           1.8         12           1
 I isoleucine          4.6         31           3
 K lysine              5.2         35           4
 L leucine             9.6         64           3
 M methionine          2.8         19           2
 N asparagine          5.8         39           2
 P proline             8.1         54           4
 Q glutamine           6.7         45           2
 R arginine            5.5         37           3
 S serine             10.4         70           4
 T threonine           6.3         42           2
 V valine              7.2         48           2
 W tryptophan          0.6          4           1
 Y tyrosine            2.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating transcription factor 6 
ATF6B                 0.219   activating transcription factor 6 beta isoform b [H...
ATF6B                 0.214   activating transcription factor 6 beta isoform a [Ho...
ATF1                  0.025   activating transcription factor 1 
CREB3L3               0.023   cAMP responsive element binding protein 3-like 3 [Ho...
CREB3L1               0.022   cAMP responsive element binding protein 3-like 1 [Ho...
CREB3L2               0.022   cAMP responsive element binding protein 3-like 2 [Ho...
CREB3L4               0.022   cAMP responsive element binding protein 3-like 4 [Ho...
CREM                  0.019   cAMP responsive element modulator isoform a 
CREM                  0.019   cAMP responsive element modulator isoform o 
CREM                  0.019   cAMP responsive element modulator isoform m 
CREM                  0.018   cAMP responsive element modulator isoform v 
CREM                  0.018   cAMP responsive element modulator isoform u 
CREB3                 0.018   cAMP responsive element binding protein 3 
CREM                  0.017   cAMP responsive element modulator isoform t 
CREB1                 0.017   cAMP responsive element binding protein 1 isoform A [...
CREB1                 0.017   cAMP responsive element binding protein 1 isoform B ...
LOC100128719          0.017   PREDICTED: hypothetical protein, partial 
LOC100128719          0.017   PREDICTED: hypothetical protein, partial 
CREM                  0.016   cAMP responsive element modulator isoform p 
CREM                  0.016   cAMP responsive element modulator isoform n 
ABI3BP                0.016   ABI gene family, member 3 (NESH) binding protein [Ho...
CREM                  0.016   cAMP responsive element modulator isoform l 
CREM                  0.016   cAMP responsive element modulator isoform k 
CREM                  0.016   cAMP responsive element modulator isoform f 
CREM                  0.016   cAMP responsive element modulator isoform e 
CREM                  0.016   cAMP responsive element modulator isoform q 
CREM                  0.015   cAMP responsive element modulator isoform s 
LOC100134147          0.015   PREDICTED: hypothetical protein 
CREM                  0.015   cAMP responsive element modulator isoform j 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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