Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CREBZF Sequence: fasta or formatted (354aa) NCBI GI: 88900495
Description:

HCF-binding transcription factor Zhangfei

Referenced in:

CREB / ATF Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         42           6
 C cysteine            1.4          5           1
 D aspartate           6.8         24           4
 E glutamate           9.0         32           3
 F phenylalanine       1.4          5           1
 G glycine            11.9         42           7
 H histidine           1.1          4           1
 I isoleucine          0.6          2           1
 K lysine              4.5         16           3
 L leucine            11.6         41           2
 M methionine          1.7          6           1
 N asparagine          2.5          9           2
 P proline             4.8         17           1
 Q glutamine           3.1         11           2
 R arginine            8.2         29           3
 S serine             11.9         42           4
 T threonine           2.8         10           2
 V valine              3.4         12           1
 W tryptophan          0.6          2           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HCF-binding transcription factor Zhangfei 
ATF6B                 0.037   activating transcription factor 6 beta isoform b [H...
ATF6B                 0.037   activating transcription factor 6 beta isoform a [Ho...
CREB3L4               0.036   cAMP responsive element binding protein 3-like 4 [Ho...
CCDC6                 0.034   coiled-coil domain containing 6 
ANKRD24               0.031   ankyrin repeat domain 24 
CREB3L3               0.030   cAMP responsive element binding protein 3-like 3 [Ho...
ATF6                  0.027   activating transcription factor 6 
SMTN                  0.027   smoothelin isoform b 
SMTN                  0.027   smoothelin isoform c 
SMTN                  0.027   smoothelin isoform a 
C6orf174              0.025   hypothetical protein LOC387104 
TTBK1                 0.024   tau tubulin kinase 1 
MN1                   0.022   meningioma  1 
MXRA7                 0.022   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.022   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.022   transmembrane anchor protein 1 isoform 1 
PABPN1                0.022   poly(A) binding protein, nuclear 1 
TNRC18                0.021   trinucleotide repeat containing 18 
CEBPG                 0.021   CCAAT/enhancer binding protein gamma 
ARID1B                0.021   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.021   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.021   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
SIRT1                 0.019   sirtuin 1 isoform a 
NPAS3                 0.019   neuronal PAS domain protein 3 isoform 2 
NPAS3                 0.019   neuronal PAS domain protein 3 isoform 1 
LOC730060             0.019   PREDICTED: hypothetical protein 
LOC730060             0.019   PREDICTED: hypothetical protein 
LOC730060             0.019   PREDICTED: hypothetical protein 
DACT3                 0.018   thymus expressed gene 3-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press