Guide to the Human Genome
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Name: TMEM9 Sequence: fasta or formatted (183aa) NCBI GI: 7705999
Description:

transmembrane protein 9

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         15           5
 C cysteine            4.9          9           1
 D aspartate           3.8          7           1
 E glutamate           8.2         15           3
 F phenylalanine       1.1          2           1
 G glycine             3.8          7           2
 H histidine           2.7          5           1
 I isoleucine          4.9          9           2
 K lysine              4.9          9           1
 L leucine            10.9         20           3
 M methionine          3.3          6           1
 N asparagine          4.4          8           1
 P proline             5.5         10           2
 Q glutamine           4.4          8           2
 R arginine            6.0         11           1
 S serine              5.5         10           2
 T threonine           3.3          6           3
 V valine              9.8         18           2
 W tryptophan          0.5          1           1
 Y tyrosine            3.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 9 
TMEM9B                0.540   TMEM9 domain family, member B 
ADAM7                 0.017   a disintegrin and metalloproteinase domain 7 
TTBK1                 0.009   tau tubulin kinase 1 
SCN11A                0.009   sodium channel, voltage-gated, type XI, alpha [Homo...
DSG2                  0.009   desmoglein 2 preproprotein 
SPINT1                0.009   serine peptidase inhibitor, Kunitz type 1 isoform 2 ...
SPINT1                0.009   serine peptidase inhibitor, Kunitz type 1 isoform 2 p...
SPINT1                0.009   serine peptidase inhibitor, Kunitz type 1 isoform 1 ...
ACCN3                 0.006   amiloride-sensitive cation channel 3 isoform a 
ACCN3                 0.006   amiloride-sensitive cation channel 3 isoform b 
ACCN3                 0.006   amiloride-sensitive cation channel 3 isoform c 
NFKBIL1               0.006   nuclear factor of kappa light polypeptide gene enha...
KRT80                 0.006   keratin 80 isoform a 
KRT80                 0.006   keratin 80 isoform b 
NFKBIL1               0.006   nuclear factor of kappa light polypeptide gene enha...
NFKBIL1               0.006   nuclear factor of kappa light polypeptide gene enha...
NFKBIL1               0.006   nuclear factor of kappa light polypeptide gene enha...
ACTN1                 0.006   actinin, alpha 1 isoform c 
ACTN1                 0.006   actinin, alpha 1 isoform a 
ACTN1                 0.006   actinin, alpha 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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