Guide to the Human Genome
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Name: TMEM9B Sequence: fasta or formatted (198aa) NCBI GI: 11034855
Description:

TMEM9 domain family, member B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         12           2
 C cysteine            4.5          9           1
 D aspartate           5.6         11           3
 E glutamate           5.1         10           2
 F phenylalanine       2.0          4           1
 G glycine             4.0          8           2
 H histidine           3.0          6           1
 I isoleucine          5.6         11           3
 K lysine              5.6         11           1
 L leucine            15.2         30           4
 M methionine          1.5          3           1
 N asparagine          3.5          7           1
 P proline             3.5          7           2
 Q glutamine           5.1         10           2
 R arginine            6.6         13           2
 S serine              7.6         15           2
 T threonine           2.0          4           1
 V valine              8.6         17           2
 W tryptophan          1.0          2           1
 Y tyrosine            4.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TMEM9 domain family, member B 
TMEM9                 0.500   transmembrane protein 9 
UBR7                  0.016   ubiquitin protein ligase E3 component n-recognin 7 ...
UBR7                  0.016   ubiquitin protein ligase E3 component n-recognin 7 ...
MUC5AC                0.013   mucin 5AC 
MUC5B                 0.013   mucin 5, subtype B, tracheobronchial 
ZNF354C               0.008   zinc finger protein 354C 
DSC3                  0.005   desmocollin 3 isoform Dsc3b preproprotein 
DSC3                  0.005   desmocollin 3 isoform Dsc3a preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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