Guide to the Human Genome
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Name: FARP2 Sequence: fasta or formatted (1054aa) NCBI GI: 7662310
Description:

FERM, RhoGEF and pleckstrin domain protein 2

Referenced in:

Cytoskeleton
Inositol Pathways
Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         63           2
 C cysteine            1.5         16           1
 D aspartate           4.3         45           2
 E glutamate           7.0         74           2
 F phenylalanine       4.7         50           2
 G glycine             6.1         64           2
 H histidine           3.4         36           2
 I isoleucine          3.7         39           2
 K lysine              6.3         66           2
 L leucine            11.7        123           3
 M methionine          2.0         21           1
 N asparagine          2.1         22           1
 P proline             6.1         64           2
 Q glutamine           5.1         54           2
 R arginine            6.6         70           2
 S serine              7.7         81           4
 T threonine           5.7         60           3
 V valine              5.6         59           2
 W tryptophan          1.2         13           1
 Y tyrosine            3.2         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FERM, RhoGEF and pleckstrin domain protein 2 
FARP1                 0.519   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
FRMD7                 0.172   FERM domain containing 7 
PTPN4                 0.122   protein tyrosine phosphatase, non-receptor type 4 [Ho...
EPB41L3               0.110   erythrocyte membrane protein band 4.1-like 3 
EPB41L2               0.107   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.107   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.107   erythrocyte membrane protein band 4.1-like 2 isoform ...
EPB41                 0.103   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41                 0.103   erythrocyte membrane protein band 4.1 (elliptocytosis...
EPB41L1               0.103   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.103   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L5               0.089   erythrocyte membrane protein band 4.1 like 5 
EPB41                 0.088   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41L4B              0.083   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.083   erythrocyte membrane protein band 4.1 like 4B isofo...
FRMD5                 0.079   FERM domain containing 5 isoform 2 
FGD4                  0.074   FYVE, RhoGEF and PH domain containing 4 
PTPN3                 0.073   protein tyrosine phosphatase, non-receptor type 3 i...
FRMD3                 0.073   FERM domain containing 3 
PTPN3                 0.071   protein tyrosine phosphatase, non-receptor type 3 i...
EPB41L4A              0.071   erythrocyte protein band 4.1-like 4 
FGD6                  0.067   FYVE, RhoGEF and PH domain containing 6 
FGD1                  0.066   faciogenital dysplasia protein 
RDX                   0.054   radixin 
MSN                   0.052   moesin 
FGD5                  0.051   FYVE, RhoGEF and PH domain containing 5 
EZR                   0.049   ezrin 
EZR                   0.049   ezrin 
PTPN21                0.047   protein tyrosine phosphatase, non-receptor type 21 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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