Guide to the Human Genome
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Name: FRMD3 Sequence: fasta or formatted (597aa) NCBI GI: 117500790
Description:

FERM domain containing 3

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         28           2
 C cysteine            2.7         16           1
 D aspartate           4.4         26           3
 E glutamate          10.1         60           4
 F phenylalanine       5.4         32           2
 G glycine             4.2         25           1
 H histidine           3.4         20           1
 I isoleucine          6.0         36           2
 K lysine              7.5         45           2
 L leucine            11.2         67           6
 M methionine          1.7         10           1
 N asparagine          2.3         14           1
 P proline             6.4         38           2
 Q glutamine           3.5         21           1
 R arginine            4.9         29           2
 S serine              8.2         49           3
 T threonine           4.0         24           3
 V valine              4.9         29           2
 W tryptophan          0.8          5           1
 Y tyrosine            3.9         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FERM domain containing 3 
FRMD5                 0.468   FERM domain containing 5 isoform 2 
EPB41L3               0.198   erythrocyte membrane protein band 4.1-like 3 
EPB41                 0.195   erythrocyte membrane protein band 4.1 (elliptocytosis...
EPB41                 0.194   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41L5               0.193   erythrocyte membrane protein band 4.1 like 5 
EPB41L2               0.192   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.192   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.192   erythrocyte membrane protein band 4.1-like 2 isoform ...
EPB41L1               0.192   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.192   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L4A              0.190   erythrocyte protein band 4.1-like 4 
EPB41L4B              0.174   erythrocyte membrane protein band 4.1 like 4B isofo...
EPB41L4B              0.173   erythrocyte membrane protein band 4.1 like 4B isofo...
PTPN4                 0.164   protein tyrosine phosphatase, non-receptor type 4 [Ho...
EPB41                 0.158   erythrocyte membrane protein band 4.1 (elliptocytosi...
FARP1                 0.154   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
FRMD7                 0.132   FERM domain containing 7 
FARP2                 0.128   FERM, RhoGEF and pleckstrin domain protein 2 
PTPN3                 0.117   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.117   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN21                0.089   protein tyrosine phosphatase, non-receptor type 21 ...
MYLIP                 0.081   myosin regulatory light chain interacting protein [H...
PTPN14                0.080   protein tyrosine phosphatase, non-receptor type 14 [...
EZR                   0.076   ezrin 
EZR                   0.076   ezrin 
NF2                   0.074   neurofibromin 2 isoform 2 
NF2                   0.074   neurofibromin 2 isoform 2 
NF2                   0.074   neurofibromin 2 isoform 2 
NF2                   0.074   neurofibromin 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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