Guide to the Human Genome
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Search of human proteins with 67782303

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|67782303 zinc finger, MYND domain containing 17 [Homo
sapiens]
         (460 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens]     954   0.0  
gi|188035871 SET and MYND domain containing 2 [Homo sapiens]           49   1e-05
gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens]      46   8e-05
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]                   44   3e-04
gi|38505161 tudor domain containing 1 [Homo sapiens]                   42   0.002
gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo...    41   0.002
gi|13489073 egl nine homolog 1 [Homo sapiens]                          41   0.003
gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Hom...    41   0.003
gi|12232401 SET and MYND domain containing 3 [Homo sapiens]            40   0.003
gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]      40   0.003
gi|28872803 myeloid translocation gene on chromosome 16 isoform ...    40   0.004
gi|28872805 myeloid translocation gene on chromosome 16 isoform ...    40   0.004
gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo sa...    40   0.004
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap...    38   0.022
gi|28329422 acute myelogenous leukemia 1 translocation 1 protein...    38   0.022
gi|28329419 acute myelogenous leukemia 1 translocation 1 protein...    38   0.022
gi|28329416 acute myelogenous leukemia 1 translocation 1 protein...    38   0.022
gi|4757916 acute myelogenous leukemia 1 translocation 1 protein ...    38   0.022
gi|239749940 PREDICTED: similar to deformed epidermal autoregula...    38   0.022
gi|89353295 core-binding factor, runt domain, alpha subunit 2; t...    36   0.084
gi|74229008 core-binding factor, runt domain, alpha subunit 2; t...    36   0.084
gi|4826663 core-binding factor, runt domain, alpha subunit 2; tr...    36   0.084
gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Hom...    36   0.084
gi|148762978 similar to CG15216-PA [Homo sapiens]                      36   0.084
gi|38093643 SET and MYND domain containing 1 [Homo sapiens]            34   0.24 
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ...    34   0.32 
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ...    34   0.32 
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ...    34   0.32 
gi|189181724 proteoglycan 4 isoform D [Homo sapiens]                   33   0.54 
gi|189181722 proteoglycan 4 isoform C [Homo sapiens]                   33   0.54 

>gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens]
          Length = 460

 Score =  954 bits (2465), Expect = 0.0
 Identities = 460/460 (100%), Positives = 460/460 (100%)

Query: 1   MAPRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPSIDTLGFFSLDDNVPGLSQL 60
           MAPRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPSIDTLGFFSLDDNVPGLSQL
Sbjct: 1   MAPRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPSIDTLGFFSLDDNVPGLSQL 60

Query: 61  ILQKLNMKSYEEYKLVVDGGTPVSGFGFRCPQEMFQRMEDTFRFCAHCRALPSGLSDSKV 120
           ILQKLNMKSYEEYKLVVDGGTPVSGFGFRCPQEMFQRMEDTFRFCAHCRALPSGLSDSKV
Sbjct: 61  ILQKLNMKSYEEYKLVVDGGTPVSGFGFRCPQEMFQRMEDTFRFCAHCRALPSGLSDSKV 120

Query: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWP 180
           LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWP
Sbjct: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWP 180

Query: 181 PEAVQDWDSWFSMKGLHLDATLDAVLVSHAVTTLWASVGRPRPDPDVLQGSLKRLLTDVL 240
           PEAVQDWDSWFSMKGLHLDATLDAVLVSHAVTTLWASVGRPRPDPDVLQGSLKRLLTDVL
Sbjct: 181 PEAVQDWDSWFSMKGLHLDATLDAVLVSHAVTTLWASVGRPRPDPDVLQGSLKRLLTDVL 240

Query: 241 SRPLTLGLGLRALGIDVRRTGGSTVHVVGASHVETFLTRPGDYDELGYMFPGHLGLRVVM 300
           SRPLTLGLGLRALGIDVRRTGGSTVHVVGASHVETFLTRPGDYDELGYMFPGHLGLRVVM
Sbjct: 241 SRPLTLGLGLRALGIDVRRTGGSTVHVVGASHVETFLTRPGDYDELGYMFPGHLGLRVVM 300

Query: 301 VGVDVATGFSQSTSTSPLEPGTIQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHS 360
           VGVDVATGFSQSTSTSPLEPGTIQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHS
Sbjct: 301 VGVDVATGFSQSTSTSPLEPGTIQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHS 360

Query: 361 SPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQILVELDTHITAFGSNPFMSLKPE 420
           SPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQILVELDTHITAFGSNPFMSLKPE
Sbjct: 361 SPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQILVELDTHITAFGSNPFMSLKPE 420

Query: 421 QVYSSPNKQPVYCSAYYIMFLGSSCQLDNRQLEEKVDGGI 460
           QVYSSPNKQPVYCSAYYIMFLGSSCQLDNRQLEEKVDGGI
Sbjct: 421 QVYSSPNKQPVYCSAYYIMFLGSSCQLDNRQLEEKVDGGI 460


>gi|188035871 SET and MYND domain containing 2 [Homo sapiens]
          Length = 433

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 88  FRCPQEMFQ-RMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHR 146
           F CP   +   + +    C +C     GLS       C RC+  +YC  ECQK DWP H+
Sbjct: 34  FSCPAYAYVLTVNERGNHCEYCFTRKEGLSK------CGRCKQAFYCNVECQKEDWPMHK 87

Query: 147 RVCQEL 152
             C  +
Sbjct: 88  LECSPM 93


>gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens]
          Length = 227

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 124 CKRCRNVYYCGPECQKSDWPAHRRVCQE 151
           C RC+   YCG +CQ+ DWPAH++ C+E
Sbjct: 187 CGRCQVARYCGSQCQQKDWPAHKKHCRE 214


>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
          Length = 1318

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 105 CAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQ 150
           CA C+      S+ + L+ C RC  V YC   CQK+ WP H+ +C+
Sbjct: 791 CAACQRKQQ--SEDEKLKRCTRCYRVGYCNQLCQKTHWPDHKGLCR 834


>gi|38505161 tudor domain containing 1 [Homo sapiens]
          Length = 1189

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 124 CKRCRNVYYCGPECQKSDWPAHRRVCQELR 153
           C +C+  YYC   CQ+ DW AH  VC+ ++
Sbjct: 181 CSQCKQTYYCSTACQRRDWSAHSIVCRPVQ 210


>gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo
           sapiens]
          Length = 703

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 84/355 (23%), Positives = 133/355 (37%), Gaps = 66/355 (18%)

Query: 121 LRHCKRCRNVYYCGPECQKSDWP------AHRRVCQELRLVAVDRLMEWLLVTGDFVLPS 174
           L  C +C  V YCG  C ++DW       +HR  C         RL  ++   G+  L +
Sbjct: 325 LTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCP--------RLAAFMERAGE--LAT 374

Query: 175 GPWPWPPEAVQDW---DSWFSMKGL------HLDATLDAVLVSHAVTTLWASVGRPRP-D 224
            P+ +  E   +    +++ + +GL       L   +     S        S+   R  D
Sbjct: 375 LPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGFSRHPRGNTPSLSLLRGGD 434

Query: 225 P-DVLQGSLKRLLTDVLSRPLTLGLGLRALGIDVRRTGGSTVHVVGASHV--------ET 275
           P  +LQG    L+  V   P     G+    ++++      +HVV A           E 
Sbjct: 435 PYQLLQGDGTALMPPVPPHPPR---GVFVPELNIQNKQSLKIHVVEAGKEFDLVMVFWEL 491

Query: 276 FLTRPGDYDELGYMFPG--------HLGLR--VVMVGVDVATGFSQSTSTSPLEPG---T 322
            +  P    EL ++  G        H  L+   + V V   +G S   S+   E G    
Sbjct: 492 LVLLPHVALELQFVGDGLPPESDEQHFTLQRDSLEVSVRPGSGISARPSSGTKEKGGRRD 551

Query: 323 IQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHSSPDLMEAWLPTLLLLRDYKIPT 382
           +Q+      YH F        Q   PDLV  F+ GF     L + WL +L  L+  ++P 
Sbjct: 552 LQIKVSARPYHLF--------QGPKPDLVIGFNSGFA----LKDTWLRSLPRLQSLRVPA 599

Query: 383 LITVYSHQELVSSLQIL-VELDTHITAFGSNPFMSLKPEQVYSSPNKQPVYCSAY 436
             T  S    V   Q + V      +    NPF S  P ++ ++ N    YC+A+
Sbjct: 600 FFTESSEYSCVMDGQTMAVATGGGTSPPQPNPFRS--PFRLRAADNCMSWYCNAF 652


>gi|13489073 egl nine homolog 1 [Homo sapiens]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQ 150
           L  C RCR+ +YC  E Q+ DW  H+ VCQ
Sbjct: 30  LLRCSRCRSSFYCCKEHQRQDWKKHKLVCQ 59


>gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Homo
           sapiens]
          Length = 742

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 69/280 (24%), Positives = 111/280 (39%), Gaps = 42/280 (15%)

Query: 168 GDFVLPSGPWPWPPEAV-QDWDSWFSMKGLHLDATLDAVLVSHAVTTLWASVGR-PRPDP 225
           G  ++P  P P PP  V   W  +++ +GL LD+ + AVL+++ +T  +      P+  P
Sbjct: 443 GTALMPPVP-PHPPRGVFGSWQDYYTWRGLSLDSPI-AVLLTYPLTVYYVITHLVPQSFP 500

Query: 226 DVLQGSLKRLLTDVLSRPLTLGLGLRALGIDVRRTGGSTVHVVGASHVETFLTRPGD--- 282
           ++   + + L   V+       L +    +           +V   HV   L   GD   
Sbjct: 501 ELNIQNKQSLKIHVVEAGKEFDLVMVFWEL-----------LVLLPHVALELQFVGDGLP 549

Query: 283 --YDELGYMFPGHLGLRVVMVGVDVATGFSQSTSTSPLEPG---TIQLSAHRGLYHDFWE 337
              DE  +     L    + V V   +G S   S+   E G    +Q+      YH F  
Sbjct: 550 PESDEQHFT----LQRDSLEVSVRPGSGISARPSSGTKEKGGRRDLQIKVSARPYHLF-- 603

Query: 338 EQVETGQTHHPDLVAAFHPGFHSSPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQ 397
                 Q   PDLV  F+ GF     L + WL +L  L+  ++P   T  S    V   Q
Sbjct: 604 ------QGPKPDLVIGFNSGFA----LKDTWLRSLPRLQSLRVPAFFTESSEYSCVMDGQ 653

Query: 398 IL-VELDTHITAFGSNPFMSLKPEQVYSSPNKQPVYCSAY 436
            + V      +    NPF S  P ++ ++ N    YC+A+
Sbjct: 654 TMAVATGGGTSPPQPNPFRS--PFRLRAADNCMSWYCNAF 691



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 6/38 (15%)

Query: 121 LRHCKRCRNVYYCGPECQKSDWP------AHRRVCQEL 152
           L  C +C  V YCG  C ++DW       +HR  C  L
Sbjct: 325 LTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCPRL 362


>gi|12232401 SET and MYND domain containing 3 [Homo sapiens]
          Length = 369

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 124 CKRCRNVYYCGPECQKSDWPAHRRVCQELR 153
           C +CR   YC  +CQK  WP H+R C+ L+
Sbjct: 3   CSQCRVAKYCSAKCQKKAWPDHKRECKCLK 32


>gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]
          Length = 440

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 105 CAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149
           CA+C A  S        + C RC+N +YC  ECQ   W  H + C
Sbjct: 394 CAYCSAEAS--------KRCSRCQNEWYCCRECQVKHWEKHGKTC 430


>gi|28872803 myeloid translocation gene on chromosome 16 isoform
           MTG16a [Homo sapiens]
          Length = 653

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 94  MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153
           +  + ED+   C +C          K    C  C    YCG  CQ  DW  H  VC +  
Sbjct: 545 VINQQEDSSESCWNC--------GRKASETCSGCNAARYCGSFCQHRDWEKHHHVCGQ-- 594

Query: 154 LVAVDRLMEWLLVTGDFVLPSGPWPWPPEA 183
                       + G   + + P P PPEA
Sbjct: 595 -----------SLQGPTAVVADPVPGPPEA 613


>gi|28872805 myeloid translocation gene on chromosome 16 isoform
           MTG16b [Homo sapiens]
          Length = 567

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 94  MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153
           +  + ED+   C +C          K    C  C    YCG  CQ  DW  H  VC +  
Sbjct: 459 VINQQEDSSESCWNC--------GRKASETCSGCNAARYCGSFCQHRDWEKHHHVCGQ-- 508

Query: 154 LVAVDRLMEWLLVTGDFVLPSGPWPWPPEA 183
                       + G   + + P P PPEA
Sbjct: 509 -----------SLQGPTAVVADPVPGPPEA 527


>gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo
           sapiens]
          Length = 441

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 104 FCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153
           FC  C        +    + C  C+ V YC   CQK+ W  H+++C+ L+
Sbjct: 319 FCTTC-------GEKGASKRCSVCKMVIYCDQTCQKTHWFTHKKICKNLK 361


>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
           sapiens]
          Length = 565

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAV 157
           + +  C  C  V YC   CQ+ DW  H+ +C +   V V
Sbjct: 510 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTV 548


>gi|28329422 acute myelogenous leukemia 1 translocation 1 protein
           isoform MTG8c [Homo sapiens]
          Length = 567

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 94  MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149
           +  + ED+   C +C          K    C  C    YCG  CQ  DW  H  +C
Sbjct: 467 VINQQEDSSESCWNC--------GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 514


>gi|28329419 acute myelogenous leukemia 1 translocation 1 protein
           isoform MTG8c [Homo sapiens]
          Length = 567

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 94  MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149
           +  + ED+   C +C          K    C  C    YCG  CQ  DW  H  +C
Sbjct: 467 VINQQEDSSESCWNC--------GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 514


>gi|28329416 acute myelogenous leukemia 1 translocation 1 protein
           isoform MTG8b [Homo sapiens]
          Length = 604

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 94  MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149
           +  + ED+   C +C          K    C  C    YCG  CQ  DW  H  +C
Sbjct: 504 VINQQEDSSESCWNC--------GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 551


>gi|4757916 acute myelogenous leukemia 1 translocation 1 protein
           isoform MTG8a [Homo sapiens]
          Length = 577

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%)

Query: 94  MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149
           +  + ED+   C +C          K    C  C    YCG  CQ  DW  H  +C
Sbjct: 477 VINQQEDSSESCWNC--------GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 524


>gi|239749940 PREDICTED: similar to deformed epidermal
           autoregulatory factor 1 [Homo sapiens]
          Length = 426

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAV 157
           + +  C  C  V YC   CQ+ DW  H+ +C +   V V
Sbjct: 371 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTV 409


>gi|89353295 core-binding factor, runt domain, alpha subunit 2;
           translocated to, 2 isoform MTGR1a [Homo sapiens]
          Length = 575

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149
           K    C  C    YCG  CQ  DW  H R+C
Sbjct: 484 KASETCSGCNIARYCGSFCQHKDWERHHRLC 514


>gi|74229008 core-binding factor, runt domain, alpha subunit 2;
           translocated to, 2 isoform MTGR1c [Homo sapiens]
          Length = 595

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149
           K    C  C    YCG  CQ  DW  H R+C
Sbjct: 504 KASETCSGCNIARYCGSFCQHKDWERHHRLC 534


>gi|4826663 core-binding factor, runt domain, alpha subunit 2;
           translocated to, 2 isoform MTGR1b [Homo sapiens]
          Length = 604

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149
           K    C  C    YCG  CQ  DW  H R+C
Sbjct: 513 KASETCSGCNIARYCGSFCQHKDWERHHRLC 543


>gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Homo
           sapiens]
          Length = 365

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 109 RALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPA-HRRVCQEL 152
           R L   + ++   R C  C   YYCG   QK+DW + H ++CQ L
Sbjct: 13  RRLCCEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQLL 57


>gi|148762978 similar to CG15216-PA [Homo sapiens]
          Length = 976

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 99  EDTFRFC--AHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVA 156
           ED    C  A CR   +  +     + C  C   YYC   C++ DW AH+  C   R+ +
Sbjct: 659 EDDLMTCSNARCRRTETMFNACLYFKSCHSCYT-YYCSRLCRREDWDAHKARCVYGRVGS 717

Query: 157 VDR 159
           V R
Sbjct: 718 VCR 720


>gi|38093643 SET and MYND domain containing 1 [Homo sapiens]
          Length = 490

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153
           L  C +C+  +YC   CQK  W  H+  C  ++
Sbjct: 62  LHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIK 94


>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
            sapiens]
          Length = 1135

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 103  RFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQE 151
            ++CA+C+         + + +C  C N  YC   CQ++ WP H + C +
Sbjct: 975  QWCANCK--------KEAIFYC--CWNTSYCDYPCQQAHWPEHMKSCTQ 1013


>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
            sapiens]
          Length = 1188

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 103  RFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQE 151
            ++CA+C+         + + +C  C N  YC   CQ++ WP H + C +
Sbjct: 1000 QWCANCK--------KEAIFYC--CWNTSYCDYPCQQAHWPEHMKSCTQ 1038


>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
            sapiens]
          Length = 1160

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 103  RFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQE 151
            ++CA+C+         + + +C  C N  YC   CQ++ WP H + C +
Sbjct: 1000 QWCANCK--------KEAIFYC--CWNTSYCDYPCQQAHWPEHMKSCTQ 1038


>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
          Length = 1270

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGP 40
           K P+   P   APTT+  P P TP KP P
Sbjct: 637 KEPAPTTPKGTAPTTLKEPAPTTPKKPAP 665



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+  AP   APTT   P P TP +P P+
Sbjct: 346 KEPAPTAPKKPAPTTPKEPAPTTPKEPAPT 375



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 2   APRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           AP+       K P+   P   APTT   P P TP +P P+
Sbjct: 352 APKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPT 391



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 2   APRSRRRRHKKPPSSVAPII---MAPTTIVTPVPLTPSKPGP 40
           AP + +      P   AP      APTT+  P P TP KP P
Sbjct: 555 APTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAP 596



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 448 KEPAPTTPKEPAPTTTKKPAPTTPKEPAPT 477



 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 14  PSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           P+   P   APTT   P P TP KP P+
Sbjct: 684 PAPTTPKETAPTTPKEPAPTTPKKPAPT 711



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 307 KKPAPTTPKEPAPTTPKEPTPTTPKEPAPT 336



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 424 KEPAPTTPKEPAPTTPKKPAPTTPKEPAPT 453



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 432 KEPAPTTPKKPAPTTPKEPAPTTPKEPAPT 461



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 14  PSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           P+   P  +APTT   P P TP +P P+
Sbjct: 506 PAPTTPEELAPTTPEEPTPTTPEEPAPT 533



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K PS       APTT   P P TP KP P+
Sbjct: 416 KEPSPTTTKEPAPTTPKEPAPTTPKKPAPT 445



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 299 KEPAPTTPKKPAPTTPKEPAPTTPKEPTPT 328


>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
          Length = 1311

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGP 40
           K P+   P   APTT+  P P TP KP P
Sbjct: 678 KEPAPTTPKGTAPTTLKEPAPTTPKKPAP 706



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+  AP   APTT   P P TP +P P+
Sbjct: 387 KEPAPTAPKKPAPTTPKEPAPTTPKEPAPT 416



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 2   APRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           AP+       K P+   P   APTT   P P TP +P P+
Sbjct: 393 APKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPT 432



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 2   APRSRRRRHKKPPSSVAPII---MAPTTIVTPVPLTPSKPGP 40
           AP + +      P   AP      APTT+  P P TP KP P
Sbjct: 596 APTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAP 637



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 489 KEPAPTTPKEPAPTTTKKPAPTTPKEPAPT 518



 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 14  PSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           P+   P   APTT   P P TP KP P+
Sbjct: 725 PAPTTPKETAPTTPKEPAPTTPKKPAPT 752



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 348 KKPAPTTPKEPAPTTPKEPTPTTPKEPAPT 377



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 465 KEPAPTTPKEPAPTTPKKPAPTTPKEPAPT 494



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 473 KEPAPTTPKKPAPTTPKEPAPTTPKEPAPT 502



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 14  PSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           P+   P  +APTT   P P TP +P P+
Sbjct: 547 PAPTTPEELAPTTPEEPTPTTPEEPAPT 574



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K PS       APTT   P P TP KP P+
Sbjct: 457 KEPSPTTTKEPAPTTPKEPAPTTPKKPAPT 486



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 12  KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41
           K P+   P   APTT   P P TP +P P+
Sbjct: 340 KEPAPTTPKKPAPTTPKEPAPTTPKEPTPT 369


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,854,322
Number of Sequences: 37866
Number of extensions: 1042087
Number of successful extensions: 3178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2919
Number of HSP's gapped (non-prelim): 249
length of query: 460
length of database: 18,247,518
effective HSP length: 106
effective length of query: 354
effective length of database: 14,233,722
effective search space: 5038737588
effective search space used: 5038737588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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