BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens] (460 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens] 954 0.0 gi|188035871 SET and MYND domain containing 2 [Homo sapiens] 49 1e-05 gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens] 46 8e-05 gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 44 3e-04 gi|38505161 tudor domain containing 1 [Homo sapiens] 42 0.002 gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo... 41 0.002 gi|13489073 egl nine homolog 1 [Homo sapiens] 41 0.003 gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Hom... 41 0.003 gi|12232401 SET and MYND domain containing 3 [Homo sapiens] 40 0.003 gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens] 40 0.003 gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 40 0.004 gi|28872805 myeloid translocation gene on chromosome 16 isoform ... 40 0.004 gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo sa... 40 0.004 gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 38 0.022 gi|28329422 acute myelogenous leukemia 1 translocation 1 protein... 38 0.022 gi|28329419 acute myelogenous leukemia 1 translocation 1 protein... 38 0.022 gi|28329416 acute myelogenous leukemia 1 translocation 1 protein... 38 0.022 gi|4757916 acute myelogenous leukemia 1 translocation 1 protein ... 38 0.022 gi|239749940 PREDICTED: similar to deformed epidermal autoregula... 38 0.022 gi|89353295 core-binding factor, runt domain, alpha subunit 2; t... 36 0.084 gi|74229008 core-binding factor, runt domain, alpha subunit 2; t... 36 0.084 gi|4826663 core-binding factor, runt domain, alpha subunit 2; tr... 36 0.084 gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Hom... 36 0.084 gi|148762978 similar to CG15216-PA [Homo sapiens] 36 0.084 gi|38093643 SET and MYND domain containing 1 [Homo sapiens] 34 0.24 gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 34 0.32 gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 34 0.32 gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 34 0.32 gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 33 0.54 gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 33 0.54 >gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens] Length = 460 Score = 954 bits (2465), Expect = 0.0 Identities = 460/460 (100%), Positives = 460/460 (100%) Query: 1 MAPRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPSIDTLGFFSLDDNVPGLSQL 60 MAPRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPSIDTLGFFSLDDNVPGLSQL Sbjct: 1 MAPRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPSIDTLGFFSLDDNVPGLSQL 60 Query: 61 ILQKLNMKSYEEYKLVVDGGTPVSGFGFRCPQEMFQRMEDTFRFCAHCRALPSGLSDSKV 120 ILQKLNMKSYEEYKLVVDGGTPVSGFGFRCPQEMFQRMEDTFRFCAHCRALPSGLSDSKV Sbjct: 61 ILQKLNMKSYEEYKLVVDGGTPVSGFGFRCPQEMFQRMEDTFRFCAHCRALPSGLSDSKV 120 Query: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWP 180 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWP Sbjct: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWP 180 Query: 181 PEAVQDWDSWFSMKGLHLDATLDAVLVSHAVTTLWASVGRPRPDPDVLQGSLKRLLTDVL 240 PEAVQDWDSWFSMKGLHLDATLDAVLVSHAVTTLWASVGRPRPDPDVLQGSLKRLLTDVL Sbjct: 181 PEAVQDWDSWFSMKGLHLDATLDAVLVSHAVTTLWASVGRPRPDPDVLQGSLKRLLTDVL 240 Query: 241 SRPLTLGLGLRALGIDVRRTGGSTVHVVGASHVETFLTRPGDYDELGYMFPGHLGLRVVM 300 SRPLTLGLGLRALGIDVRRTGGSTVHVVGASHVETFLTRPGDYDELGYMFPGHLGLRVVM Sbjct: 241 SRPLTLGLGLRALGIDVRRTGGSTVHVVGASHVETFLTRPGDYDELGYMFPGHLGLRVVM 300 Query: 301 VGVDVATGFSQSTSTSPLEPGTIQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHS 360 VGVDVATGFSQSTSTSPLEPGTIQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHS Sbjct: 301 VGVDVATGFSQSTSTSPLEPGTIQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHS 360 Query: 361 SPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQILVELDTHITAFGSNPFMSLKPE 420 SPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQILVELDTHITAFGSNPFMSLKPE Sbjct: 361 SPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQILVELDTHITAFGSNPFMSLKPE 420 Query: 421 QVYSSPNKQPVYCSAYYIMFLGSSCQLDNRQLEEKVDGGI 460 QVYSSPNKQPVYCSAYYIMFLGSSCQLDNRQLEEKVDGGI Sbjct: 421 QVYSSPNKQPVYCSAYYIMFLGSSCQLDNRQLEEKVDGGI 460 >gi|188035871 SET and MYND domain containing 2 [Homo sapiens] Length = 433 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Query: 88 FRCPQEMFQ-RMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHR 146 F CP + + + C +C GLS C RC+ +YC ECQK DWP H+ Sbjct: 34 FSCPAYAYVLTVNERGNHCEYCFTRKEGLSK------CGRCKQAFYCNVECQKEDWPMHK 87 Query: 147 RVCQEL 152 C + Sbjct: 88 LECSPM 93 >gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens] Length = 227 Score = 45.8 bits (107), Expect = 8e-05 Identities = 15/28 (53%), Positives = 21/28 (75%) Query: 124 CKRCRNVYYCGPECQKSDWPAHRRVCQE 151 C RC+ YCG +CQ+ DWPAH++ C+E Sbjct: 187 CGRCQVARYCGSQCQQKDWPAHKKHCRE 214 >gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] Length = 1318 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query: 105 CAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQ 150 CA C+ S+ + L+ C RC V YC CQK+ WP H+ +C+ Sbjct: 791 CAACQRKQQ--SEDEKLKRCTRCYRVGYCNQLCQKTHWPDHKGLCR 834 >gi|38505161 tudor domain containing 1 [Homo sapiens] Length = 1189 Score = 41.6 bits (96), Expect = 0.002 Identities = 13/30 (43%), Positives = 19/30 (63%) Query: 124 CKRCRNVYYCGPECQKSDWPAHRRVCQELR 153 C +C+ YYC CQ+ DW AH VC+ ++ Sbjct: 181 CSQCKQTYYCSTACQRRDWSAHSIVCRPVQ 210 >gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo sapiens] Length = 703 Score = 41.2 bits (95), Expect = 0.002 Identities = 84/355 (23%), Positives = 133/355 (37%), Gaps = 66/355 (18%) Query: 121 LRHCKRCRNVYYCGPECQKSDWP------AHRRVCQELRLVAVDRLMEWLLVTGDFVLPS 174 L C +C V YCG C ++DW +HR C RL ++ G+ L + Sbjct: 325 LTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCP--------RLAAFMERAGE--LAT 374 Query: 175 GPWPWPPEAVQDW---DSWFSMKGL------HLDATLDAVLVSHAVTTLWASVGRPRP-D 224 P+ + E + +++ + +GL L + S S+ R D Sbjct: 375 LPFTYTAEVTSETFNKEAFLASRGLTRGYWTQLSMLIPGPGFSRHPRGNTPSLSLLRGGD 434 Query: 225 P-DVLQGSLKRLLTDVLSRPLTLGLGLRALGIDVRRTGGSTVHVVGASHV--------ET 275 P +LQG L+ V P G+ ++++ +HVV A E Sbjct: 435 PYQLLQGDGTALMPPVPPHPPR---GVFVPELNIQNKQSLKIHVVEAGKEFDLVMVFWEL 491 Query: 276 FLTRPGDYDELGYMFPG--------HLGLR--VVMVGVDVATGFSQSTSTSPLEPG---T 322 + P EL ++ G H L+ + V V +G S S+ E G Sbjct: 492 LVLLPHVALELQFVGDGLPPESDEQHFTLQRDSLEVSVRPGSGISARPSSGTKEKGGRRD 551 Query: 323 IQLSAHRGLYHDFWEEQVETGQTHHPDLVAAFHPGFHSSPDLMEAWLPTLLLLRDYKIPT 382 +Q+ YH F Q PDLV F+ GF L + WL +L L+ ++P Sbjct: 552 LQIKVSARPYHLF--------QGPKPDLVIGFNSGFA----LKDTWLRSLPRLQSLRVPA 599 Query: 383 LITVYSHQELVSSLQIL-VELDTHITAFGSNPFMSLKPEQVYSSPNKQPVYCSAY 436 T S V Q + V + NPF S P ++ ++ N YC+A+ Sbjct: 600 FFTESSEYSCVMDGQTMAVATGGGTSPPQPNPFRS--PFRLRAADNCMSWYCNAF 652 >gi|13489073 egl nine homolog 1 [Homo sapiens] Length = 426 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/30 (50%), Positives = 19/30 (63%) Query: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQ 150 L C RCR+ +YC E Q+ DW H+ VCQ Sbjct: 30 LLRCSRCRSSFYCCKEHQRQDWKKHKLVCQ 59 >gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Homo sapiens] Length = 742 Score = 40.8 bits (94), Expect = 0.003 Identities = 69/280 (24%), Positives = 111/280 (39%), Gaps = 42/280 (15%) Query: 168 GDFVLPSGPWPWPPEAV-QDWDSWFSMKGLHLDATLDAVLVSHAVTTLWASVGR-PRPDP 225 G ++P P P PP V W +++ +GL LD+ + AVL+++ +T + P+ P Sbjct: 443 GTALMPPVP-PHPPRGVFGSWQDYYTWRGLSLDSPI-AVLLTYPLTVYYVITHLVPQSFP 500 Query: 226 DVLQGSLKRLLTDVLSRPLTLGLGLRALGIDVRRTGGSTVHVVGASHVETFLTRPGD--- 282 ++ + + L V+ L + + +V HV L GD Sbjct: 501 ELNIQNKQSLKIHVVEAGKEFDLVMVFWEL-----------LVLLPHVALELQFVGDGLP 549 Query: 283 --YDELGYMFPGHLGLRVVMVGVDVATGFSQSTSTSPLEPG---TIQLSAHRGLYHDFWE 337 DE + L + V V +G S S+ E G +Q+ YH F Sbjct: 550 PESDEQHFT----LQRDSLEVSVRPGSGISARPSSGTKEKGGRRDLQIKVSARPYHLF-- 603 Query: 338 EQVETGQTHHPDLVAAFHPGFHSSPDLMEAWLPTLLLLRDYKIPTLITVYSHQELVSSLQ 397 Q PDLV F+ GF L + WL +L L+ ++P T S V Q Sbjct: 604 ------QGPKPDLVIGFNSGFA----LKDTWLRSLPRLQSLRVPAFFTESSEYSCVMDGQ 653 Query: 398 IL-VELDTHITAFGSNPFMSLKPEQVYSSPNKQPVYCSAY 436 + V + NPF S P ++ ++ N YC+A+ Sbjct: 654 TMAVATGGGTSPPQPNPFRS--PFRLRAADNCMSWYCNAF 691 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 6/38 (15%) Query: 121 LRHCKRCRNVYYCGPECQKSDWP------AHRRVCQEL 152 L C +C V YCG C ++DW +HR C L Sbjct: 325 LTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCPRL 362 >gi|12232401 SET and MYND domain containing 3 [Homo sapiens] Length = 369 Score = 40.4 bits (93), Expect = 0.003 Identities = 14/30 (46%), Positives = 19/30 (63%) Query: 124 CKRCRNVYYCGPECQKSDWPAHRRVCQELR 153 C +CR YC +CQK WP H+R C+ L+ Sbjct: 3 CSQCRVAKYCSAKCQKKAWPDHKRECKCLK 32 >gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens] Length = 440 Score = 40.4 bits (93), Expect = 0.003 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%) Query: 105 CAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149 CA+C A S + C RC+N +YC ECQ W H + C Sbjct: 394 CAYCSAEAS--------KRCSRCQNEWYCCRECQVKHWEKHGKTC 430 >gi|28872803 myeloid translocation gene on chromosome 16 isoform MTG16a [Homo sapiens] Length = 653 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 21/90 (23%) Query: 94 MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153 + + ED+ C +C K C C YCG CQ DW H VC + Sbjct: 545 VINQQEDSSESCWNC--------GRKASETCSGCNAARYCGSFCQHRDWEKHHHVCGQ-- 594 Query: 154 LVAVDRLMEWLLVTGDFVLPSGPWPWPPEA 183 + G + + P P PPEA Sbjct: 595 -----------SLQGPTAVVADPVPGPPEA 613 >gi|28872805 myeloid translocation gene on chromosome 16 isoform MTG16b [Homo sapiens] Length = 567 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 21/90 (23%) Query: 94 MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153 + + ED+ C +C K C C YCG CQ DW H VC + Sbjct: 459 VINQQEDSSESCWNC--------GRKASETCSGCNAARYCGSFCQHRDWEKHHHVCGQ-- 508 Query: 154 LVAVDRLMEWLLVTGDFVLPSGPWPWPPEA 183 + G + + P P PPEA Sbjct: 509 -----------SLQGPTAVVADPVPGPPEA 527 >gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo sapiens] Length = 441 Score = 40.0 bits (92), Expect = 0.004 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%) Query: 104 FCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153 FC C + + C C+ V YC CQK+ W H+++C+ L+ Sbjct: 319 FCTTC-------GEKGASKRCSVCKMVIYCDQTCQKTHWFTHKKICKNLK 361 >gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sapiens] Length = 565 Score = 37.7 bits (86), Expect = 0.022 Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAV 157 + + C C V YC CQ+ DW H+ +C + V V Sbjct: 510 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTV 548 >gi|28329422 acute myelogenous leukemia 1 translocation 1 protein isoform MTG8c [Homo sapiens] Length = 567 Score = 37.7 bits (86), Expect = 0.022 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%) Query: 94 MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149 + + ED+ C +C K C C YCG CQ DW H +C Sbjct: 467 VINQQEDSSESCWNC--------GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 514 >gi|28329419 acute myelogenous leukemia 1 translocation 1 protein isoform MTG8c [Homo sapiens] Length = 567 Score = 37.7 bits (86), Expect = 0.022 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%) Query: 94 MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149 + + ED+ C +C K C C YCG CQ DW H +C Sbjct: 467 VINQQEDSSESCWNC--------GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 514 >gi|28329416 acute myelogenous leukemia 1 translocation 1 protein isoform MTG8b [Homo sapiens] Length = 604 Score = 37.7 bits (86), Expect = 0.022 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%) Query: 94 MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149 + + ED+ C +C K C C YCG CQ DW H +C Sbjct: 504 VINQQEDSSESCWNC--------GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 551 >gi|4757916 acute myelogenous leukemia 1 translocation 1 protein isoform MTG8a [Homo sapiens] Length = 577 Score = 37.7 bits (86), Expect = 0.022 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%) Query: 94 MFQRMEDTFRFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149 + + ED+ C +C K C C YCG CQ DW H +C Sbjct: 477 VINQQEDSSESCWNC--------GRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 524 >gi|239749940 PREDICTED: similar to deformed epidermal autoregulatory factor 1 [Homo sapiens] Length = 426 Score = 37.7 bits (86), Expect = 0.022 Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVAV 157 + + C C V YC CQ+ DW H+ +C + V V Sbjct: 371 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTV 409 >gi|89353295 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 isoform MTGR1a [Homo sapiens] Length = 575 Score = 35.8 bits (81), Expect = 0.084 Identities = 13/31 (41%), Positives = 14/31 (45%) Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149 K C C YCG CQ DW H R+C Sbjct: 484 KASETCSGCNIARYCGSFCQHKDWERHHRLC 514 >gi|74229008 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 isoform MTGR1c [Homo sapiens] Length = 595 Score = 35.8 bits (81), Expect = 0.084 Identities = 13/31 (41%), Positives = 14/31 (45%) Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149 K C C YCG CQ DW H R+C Sbjct: 504 KASETCSGCNIARYCGSFCQHKDWERHHRLC 534 >gi|4826663 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 isoform MTGR1b [Homo sapiens] Length = 604 Score = 35.8 bits (81), Expect = 0.084 Identities = 13/31 (41%), Positives = 14/31 (45%) Query: 119 KVLRHCKRCRNVYYCGPECQKSDWPAHRRVC 149 K C C YCG CQ DW H R+C Sbjct: 513 KASETCSGCNIARYCGSFCQHKDWERHHRLC 543 >gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Homo sapiens] Length = 365 Score = 35.8 bits (81), Expect = 0.084 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 109 RALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPA-HRRVCQEL 152 R L + ++ R C C YYCG QK+DW + H ++CQ L Sbjct: 13 RRLCCEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQLL 57 >gi|148762978 similar to CG15216-PA [Homo sapiens] Length = 976 Score = 35.8 bits (81), Expect = 0.084 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 99 EDTFRFC--AHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQELRLVA 156 ED C A CR + + + C C YYC C++ DW AH+ C R+ + Sbjct: 659 EDDLMTCSNARCRRTETMFNACLYFKSCHSCYT-YYCSRLCRREDWDAHKARCVYGRVGS 717 Query: 157 VDR 159 V R Sbjct: 718 VCR 720 >gi|38093643 SET and MYND domain containing 1 [Homo sapiens] Length = 490 Score = 34.3 bits (77), Expect = 0.24 Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 121 LRHCKRCRNVYYCGPECQKSDWPAHRRVCQELR 153 L C +C+ +YC CQK W H+ C ++ Sbjct: 62 LHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIK 94 >gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo sapiens] Length = 1135 Score = 33.9 bits (76), Expect = 0.32 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%) Query: 103 RFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQE 151 ++CA+C+ + + +C C N YC CQ++ WP H + C + Sbjct: 975 QWCANCK--------KEAIFYC--CWNTSYCDYPCQQAHWPEHMKSCTQ 1013 >gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo sapiens] Length = 1188 Score = 33.9 bits (76), Expect = 0.32 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%) Query: 103 RFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQE 151 ++CA+C+ + + +C C N YC CQ++ WP H + C + Sbjct: 1000 QWCANCK--------KEAIFYC--CWNTSYCDYPCQQAHWPEHMKSCTQ 1038 >gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo sapiens] Length = 1160 Score = 33.9 bits (76), Expect = 0.32 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 10/49 (20%) Query: 103 RFCAHCRALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPAHRRVCQE 151 ++CA+C+ + + +C C N YC CQ++ WP H + C + Sbjct: 1000 QWCANCK--------KEAIFYC--CWNTSYCDYPCQQAHWPEHMKSCTQ 1038 >gi|189181724 proteoglycan 4 isoform D [Homo sapiens] Length = 1270 Score = 33.1 bits (74), Expect = 0.54 Identities = 14/29 (48%), Positives = 16/29 (55%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGP 40 K P+ P APTT+ P P TP KP P Sbjct: 637 KEPAPTTPKGTAPTTLKEPAPTTPKKPAP 665 Score = 31.6 bits (70), Expect = 1.6 Identities = 14/30 (46%), Positives = 17/30 (56%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ AP APTT P P TP +P P+ Sbjct: 346 KEPAPTAPKKPAPTTPKEPAPTTPKEPAPT 375 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/40 (37%), Positives = 19/40 (47%) Query: 2 APRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 AP+ K P+ P APTT P P TP +P P+ Sbjct: 352 APKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPT 391 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 2 APRSRRRRHKKPPSSVAPII---MAPTTIVTPVPLTPSKPGP 40 AP + + P AP APTT+ P P TP KP P Sbjct: 555 APTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAP 596 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 448 KEPAPTTPKEPAPTTTKKPAPTTPKEPAPT 477 Score = 30.4 bits (67), Expect = 3.5 Identities = 13/28 (46%), Positives = 15/28 (53%) Query: 14 PSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 P+ P APTT P P TP KP P+ Sbjct: 684 PAPTTPKETAPTTPKEPAPTTPKKPAPT 711 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 307 KKPAPTTPKEPAPTTPKEPTPTTPKEPAPT 336 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 424 KEPAPTTPKEPAPTTPKKPAPTTPKEPAPT 453 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 432 KEPAPTTPKKPAPTTPKEPAPTTPKEPAPT 461 Score = 30.0 bits (66), Expect = 4.6 Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 14 PSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 P+ P +APTT P P TP +P P+ Sbjct: 506 PAPTTPEELAPTTPEEPTPTTPEEPAPT 533 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/30 (46%), Positives = 15/30 (50%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K PS APTT P P TP KP P+ Sbjct: 416 KEPSPTTTKEPAPTTPKEPAPTTPKKPAPT 445 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 299 KEPAPTTPKKPAPTTPKEPAPTTPKEPTPT 328 >gi|189181722 proteoglycan 4 isoform C [Homo sapiens] Length = 1311 Score = 33.1 bits (74), Expect = 0.54 Identities = 14/29 (48%), Positives = 16/29 (55%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGP 40 K P+ P APTT+ P P TP KP P Sbjct: 678 KEPAPTTPKGTAPTTLKEPAPTTPKKPAP 706 Score = 31.6 bits (70), Expect = 1.6 Identities = 14/30 (46%), Positives = 17/30 (56%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ AP APTT P P TP +P P+ Sbjct: 387 KEPAPTAPKKPAPTTPKEPAPTTPKEPAPT 416 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/40 (37%), Positives = 19/40 (47%) Query: 2 APRSRRRRHKKPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 AP+ K P+ P APTT P P TP +P P+ Sbjct: 393 APKKPAPTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPT 432 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 2 APRSRRRRHKKPPSSVAPII---MAPTTIVTPVPLTPSKPGP 40 AP + + P AP APTT+ P P TP KP P Sbjct: 596 APTTPKEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAP 637 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 489 KEPAPTTPKEPAPTTTKKPAPTTPKEPAPT 518 Score = 30.4 bits (67), Expect = 3.5 Identities = 13/28 (46%), Positives = 15/28 (53%) Query: 14 PSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 P+ P APTT P P TP KP P+ Sbjct: 725 PAPTTPKETAPTTPKEPAPTTPKKPAPT 752 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 348 KKPAPTTPKEPAPTTPKEPTPTTPKEPAPT 377 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 465 KEPAPTTPKEPAPTTPKKPAPTTPKEPAPT 494 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 473 KEPAPTTPKKPAPTTPKEPAPTTPKEPAPT 502 Score = 30.0 bits (66), Expect = 4.6 Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 14 PSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 P+ P +APTT P P TP +P P+ Sbjct: 547 PAPTTPEELAPTTPEEPTPTTPEEPAPT 574 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/30 (46%), Positives = 15/30 (50%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K PS APTT P P TP KP P+ Sbjct: 457 KEPSPTTTKEPAPTTPKEPAPTTPKKPAPT 486 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 12 KPPSSVAPIIMAPTTIVTPVPLTPSKPGPS 41 K P+ P APTT P P TP +P P+ Sbjct: 340 KEPAPTTPKKPAPTTPKEPAPTTPKEPTPT 369 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.138 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,854,322 Number of Sequences: 37866 Number of extensions: 1042087 Number of successful extensions: 3178 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 2919 Number of HSP's gapped (non-prelim): 249 length of query: 460 length of database: 18,247,518 effective HSP length: 106 effective length of query: 354 effective length of database: 14,233,722 effective search space: 5038737588 effective search space used: 5038737588 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.