Guide to the Human Genome
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Name: C10orf54 Sequence: fasta or formatted (311aa) NCBI GI: 62339432
Description:

platelet receptor Gi24

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         26           3
 C cysteine            2.6          8           2
 D aspartate           3.9         12           1
 E glutamate           5.1         16           1
 F phenylalanine       3.2         10           2
 G glycine             7.4         23           2
 H histidine           5.1         16           3
 I isoleucine          3.5         11           1
 K lysine              1.9          6           1
 L leucine            10.9         34           3
 M methionine          1.3          4           1
 N asparagine          3.5         11           1
 P proline             7.7         24           2
 Q glutamine           4.8         15           1
 R arginine            5.8         18           2
 S serine              9.3         29           3
 T threonine           4.8         15           1
 V valine              7.1         22           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   platelet receptor Gi24 
CD274                 0.023   CD274 molecule 
MXRA8                 0.020   matrix-remodelling associated 8 
CDH4                  0.016   cadherin 4, type 1 preproprotein 
SCN2B                 0.016   sodium channel, voltage-gated, type II, beta 
SCN4B                 0.016   sodium channel, voltage-gated, type IV, beta isoform...
CDH2                  0.016   cadherin 2, type 1 preproprotein 
VSIG1                 0.016   V-set and immunoglobulin domain containing 1 
HAVCR2                0.015   T cell immunoglobulin mucin 3 
SCN4B                 0.015   sodium channel, voltage-gated, type IV, beta isofor...
CDH24                 0.015   cadherin-like 24 isoform 2 
CDH24                 0.015   cadherin-like 24 isoform 1 
LY6G6F                0.015   G6f protein 
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
PCDH15                0.013   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.013   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.013   protocadherin 15 isoform CD1-7 precursor 
LBXCOR1               0.013   LBXCOR1 homolog 
MLL4                  0.013   myeloid/lymphoid or mixed-lineage leukemia 4 
WBP11                 0.013   WW domain binding protein 11 
NCAM1                 0.011   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.011   neural cell adhesion molecule 1 isoform 2 
GBA2                  0.011   bile acid beta-glucosidase 
CCNK                  0.011   cyclin K isoform 1 
PDCD1LG2              0.011   programmed cell death 1 ligand 2 
BTN2A2                0.011   butyrophilin, subfamily 2, member A2 isoform a 
FMNL3                 0.010   formin-like 3 isoform 2 
FMNL3                 0.010   formin-like 3 isoform 1 
IRF2BP2               0.010   interferon regulatory factor 2 binding protein 2 is...
USHBP1                0.010   Usher syndrome 1C binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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