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Search of human proteins with 13489077
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13489077 homeobox A6 [Homo sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13489077 homeobox A6 [Homo sapiens] 489 e-139
gi|23503237 homeobox B6 [Homo sapiens] 243 1e-64
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 205 2e-53
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 156 1e-38
gi|24497517 homeobox A5 [Homo sapiens] 138 5e-33
gi|85068580 homeobox B7 [Homo sapiens] 137 6e-33
gi|4504469 homeobox B5 [Homo sapiens] 133 1e-31
gi|24497556 homeobox A7 [Homo sapiens] 131 6e-31
gi|23397672 homeobox D4 [Homo sapiens] 127 1e-29
gi|148613882 homeobox A4 [Homo sapiens] 127 1e-29
gi|11321638 homeobox C5 [Homo sapiens] 124 5e-29
gi|13273315 homeobox B4 [Homo sapiens] 122 3e-28
gi|24497538 homeobox C4 [Homo sapiens] 122 3e-28
gi|24497540 homeobox C4 [Homo sapiens] 122 3e-28
gi|12056969 homeobox C8 [Homo sapiens] 119 2e-27
gi|13273317 homeobox B8 [Homo sapiens] 117 1e-26
gi|15029506 homeobox D8 [Homo sapiens] 115 2e-26
gi|19923391 homeobox D3 [Homo sapiens] 109 2e-24
gi|24497547 homeobox C9 [Homo sapiens] 100 8e-22
gi|194363768 homeobox D9 [Homo sapiens] 98 5e-21
gi|24497513 homeobox A3 isoform a [Homo sapiens] 96 3e-20
gi|13562112 homeobox A3 isoform a [Homo sapiens] 96 3e-20
gi|24497515 homeobox A3 isoform b [Homo sapiens] 94 1e-19
gi|23097236 homeobox A9 [Homo sapiens] 93 2e-19
gi|84570137 homeobox B3 [Homo sapiens] 93 2e-19
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 91 8e-19
gi|10140847 homeobox A2 [Homo sapiens] 90 1e-18
gi|15029508 homeobox B9 [Homo sapiens] 90 2e-18
gi|24497533 homeobox C10 [Homo sapiens] 89 4e-18
gi|24497551 homeobox A10 isoform b [Homo sapiens] 88 5e-18
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 489 bits (1259), Expect = e-139
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ 60
MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ
Sbjct: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ 60
Query: 61 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG 120
SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG
Sbjct: 61 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG 120
Query: 121 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL 180
KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL
Sbjct: 121 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL 180
Query: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE
Sbjct: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 243 bits (620), Expect = 1e-64
Identities = 132/235 (56%), Positives = 163/235 (69%), Gaps = 13/235 (5%)
Query: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ 59
MSSYFVN TFP +L SGQ+SFLGQLPLY +GY D LR +PA YG DK + + +Y
Sbjct: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP 60
Query: 60 QSNSVLACNRASYEYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSG 118
+ A +YG A FY +K+ S + SG+ +Q F PE + S
Sbjct: 61 PAGGGYG-RAAPCDYGPAPAFYREKE-SACALSGADEQPP------FHPEPR---KSDCA 109
Query: 119 QGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNR 178
Q K++ E ++K ++PVYPWMQRMNSC + +G GRRGRQTYTRYQTLELEKEFH+NR
Sbjct: 110 QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNR 169
Query: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
YLTRRRRIEIA+ALCLTERQIKIWFQNRRMKWKKE+KL++++Q S E+ E K E
Sbjct: 170 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE 224
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 205 bits (522), Expect = 2e-53
Identities = 111/229 (48%), Positives = 144/229 (62%), Gaps = 14/229 (6%)
Query: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQ 60
M+SYF NP+ L GQD L + L YD +R F ++YGA+ ++ Y++P + Q
Sbjct: 1 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAYDPVRHF-STYGAAVAQNRIYSTPFYSPQ 58
Query: 61 SNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQG 120
N V + +R Y+YG++ FY +KD+ + L + + D SS QG
Sbjct: 59 ENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNT---------LGHNTQTSIAQDFSSEQG 109
Query: 121 KALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYL 180
+ D+K + +YPWMQRMNS +G YG+ RRGRQ Y+RYQTLELEKEFHFNRYL
Sbjct: 110 RTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYL 166
Query: 181 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
TRRRRIEIANALCLTERQIKIWFQNRRMKWKKE+ L ++ G + A
Sbjct: 167 TRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATA 215
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 156 bits (395), Expect = 1e-38
Identities = 78/116 (67%), Positives = 89/116 (76%), Gaps = 3/116 (2%)
Query: 114 DSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKE 173
D SS QG+ D+K + +YPWMQRMNS +G YG+ RRGRQ Y+RYQTLELEKE
Sbjct: 21 DFSSEQGRTAPQ---DQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKE 77
Query: 174 FHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEA 229
FHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE+ L ++ G + A
Sbjct: 78 FHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATA 133
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 138 bits (347), Expect = 5e-33
Identities = 97/259 (37%), Positives = 127/259 (49%), Gaps = 46/259 (17%)
Query: 1 MSSYFVNPTFPGSLPSG------------------QDSFLGQLPLYQAGYDAL------- 35
MSSYFVN +F G P+G +DS Y GY+ +
Sbjct: 1 MSSYFVN-SFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRS 59
Query: 36 -----------RPFPASYGASSLP-DKTYTSPCFYQQSNSV--LACNRASYEYGASCFYS 81
R + AS AS+ P + Y+ P S L C+ + G+ +
Sbjct: 60 GSGHFGSGERARSYAAS--ASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHG 117
Query: 82 DKDL----SGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVY 137
K+ SGAS + + + + +SS Q A + +Y
Sbjct: 118 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY 177
Query: 138 PWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTER 197
PWM++++ + G G+R R YTRYQTLELEKEFHFNRYLTRRRRIEIA+ALCL+ER
Sbjct: 178 PWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSER 237
Query: 198 QIKIWFQNRRMKWKKENKL 216
QIKIWFQNRRMKWKK+NKL
Sbjct: 238 QIKIWFQNRRMKWKKDNKL 256
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 137 bits (346), Expect = 6e-33
Identities = 91/215 (42%), Positives = 112/215 (52%), Gaps = 32/215 (14%)
Query: 40 ASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYS-DKDLSGASPSGSGK--Q 96
+ Y ASS + + F +Q++ A N YGA S + G P G G Q
Sbjct: 12 SKYPASS---SVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQ 68
Query: 97 RGPGDY------------LHFSPEQQYKP-----DSSSGQG-KALHDEGADRKYTSPVYP 138
G Y +H +P +Q DS+ G K D + +YP
Sbjct: 69 SAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYP 128
Query: 139 WMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQ 198
WM+ G+ +RGRQTYTRYQTLELEKEFH+NRYLTRRRRIEIA+ LCLTERQ
Sbjct: 129 WMRSS--------GTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ 180
Query: 199 IKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
IKIWFQNRRMKWKKENK + +EA+ E
Sbjct: 181 IKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEE 215
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 133 bits (335), Expect = 1e-31
Identities = 101/260 (38%), Positives = 129/260 (49%), Gaps = 49/260 (18%)
Query: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-------DALRPFPASYG---------- 43
MSSYFVN +F G P+G D QL Y +G D SYG
Sbjct: 1 MSSYFVN-SFSGRYPNGPDY---QLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSV 56
Query: 44 ----ASS-----LPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSG 94
ASS + + + P Q+ A + S S ++ D GA PS S
Sbjct: 57 NRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASS 116
Query: 95 ---KQRGPGDYLHFS----------PEQQYKPDSSSGQGKALHDE-----GADRKYTSPV 136
+ +F+ PE+ SS +A + A T +
Sbjct: 117 PSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQI 176
Query: 137 YPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTE 196
+PWM++++ + + G G+R R YTRYQTLELEKEFHFNRYLTRRRRIEIA+ALCL+E
Sbjct: 177 FPWMRKLH-ISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 235
Query: 197 RQIKIWFQNRRMKWKKENKL 216
RQIKIWFQNRRMKWKK+NKL
Sbjct: 236 RQIKIWFQNRRMKWKKDNKL 255
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 131 bits (329), Expect = 6e-31
Identities = 91/197 (46%), Positives = 107/197 (54%), Gaps = 30/197 (15%)
Query: 40 ASYGASSLPDKTYTSPCFYQQSNSVLACN------RASYEYGASCF-------YSDKDLS 86
+SY ++L K YT+ Q+ +C+ R+ Y GA F Y+
Sbjct: 3 SSYYVNALFSK-YTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPL 61
Query: 87 GASPSGSGKQRGPGDY--LHFSPEQQYKPDSSSGQGKAL---HDEGA---DRKYTSPVYP 138
SP SG G Y L + Q P S K DEGA + +YP
Sbjct: 62 YQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYP 121
Query: 139 WMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQ 198
WM+ G +RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA+ALCLTERQ
Sbjct: 122 WMRSS--------GPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 173
Query: 199 IKIWFQNRRMKWKKENK 215
IKIWFQNRRMKWKKE+K
Sbjct: 174 IKIWFQNRRMKWKKEHK 190
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 127 bits (318), Expect = 1e-29
Identities = 96/247 (38%), Positives = 114/247 (46%), Gaps = 35/247 (14%)
Query: 1 MSSYFVN-----PTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSP 55
MSSY VN P FP Q +LG+ G A GA P Y P
Sbjct: 3 MSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGA-------QGADFQPPGLYPRP 55
Query: 56 CFYQQSNSVLACNRASYEYGASCFYSDKDLS----GASPSG-SGKQRGPGDYLHFSPEQQ 110
F +Q +G S L G P G G PG+ P
Sbjct: 56 DFGEQP------------FGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPP 103
Query: 111 YKP----DSSSGQGKALHDEGADRKYTSPVYPWMQRM--NSCAGAVYGSHGRRGRQTYTR 164
P + S G K + VYPWM+++ NS G +R R YTR
Sbjct: 104 PAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTR 163
Query: 165 YQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSG 224
Q LELEKEFHFNRYLTRRRRIEIA+ LCL+ERQIKIWFQNRRMKWKK++KL N+ S
Sbjct: 164 QQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS 223
Query: 225 EDSEAKA 231
S + +
Sbjct: 224 SSSSSSS 230
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 127 bits (318), Expect = 1e-29
Identities = 61/99 (61%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
Query: 136 VYPWMQRMNSCA--GAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALC 193
VYPWM++++ A + G +R R YTR Q LELEKEFHFNRYLTRRRRIEIA+ LC
Sbjct: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
Query: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
L+ERQ+KIWFQNRRMKWKK++KL N+ S + A AG
Sbjct: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAG 292
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 124 bits (312), Expect = 5e-29
Identities = 57/81 (70%), Positives = 68/81 (83%), Gaps = 4/81 (4%)
Query: 136 VYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLT 195
+YPWM +++ + + G+R R +YTRYQTLELEKEFHFNRYLTRRRRIEIAN LCL
Sbjct: 140 IYPWMTKLHMS----HETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN 195
Query: 196 ERQIKIWFQNRRMKWKKENKL 216
ERQIKIWFQNRRMKWKK++K+
Sbjct: 196 ERQIKIWFQNRRMKWKKDSKM 216
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 122 bits (306), Expect = 3e-28
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
Query: 136 VYPWMQRMN-SCAGAVY-GSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALC 193
VYPWM++++ S Y G +R R YTR Q LELEKEFH+NRYLTRRRR+EIA+ALC
Sbjct: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
Query: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAG 232
L+ERQIKIWFQNRRMKWKK++KL N+ SG + + G
Sbjct: 201 LSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSAGG 239
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 122 bits (305), Expect = 3e-28
Identities = 77/169 (45%), Positives = 95/169 (56%), Gaps = 25/169 (14%)
Query: 80 YSDKDLSGASPSGSGKQRG--PGDYLHFSPEQQY---KPDSSSG-------------QGK 121
Y ++ S S G G RG P H PE+ +P SG Q
Sbjct: 62 YPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPA 121
Query: 122 ALHDEGADRKYTSPVYPWMQRMN-SCAGAVY-GSHGRRGRQTYTRYQTLELEKEFHFNRY 179
H A K VYPWM++++ S Y G +R R YTR Q LELEKEFH+NRY
Sbjct: 122 PDHPSSAASKQPI-VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
Query: 180 LTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL----INSTQPSG 224
LTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKK+++L + S P+G
Sbjct: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAG 229
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 122 bits (305), Expect = 3e-28
Identities = 77/169 (45%), Positives = 95/169 (56%), Gaps = 25/169 (14%)
Query: 80 YSDKDLSGASPSGSGKQRG--PGDYLHFSPEQQY---KPDSSSG-------------QGK 121
Y ++ S S G G RG P H PE+ +P SG Q
Sbjct: 62 YPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPA 121
Query: 122 ALHDEGADRKYTSPVYPWMQRMN-SCAGAVY-GSHGRRGRQTYTRYQTLELEKEFHFNRY 179
H A K VYPWM++++ S Y G +R R YTR Q LELEKEFH+NRY
Sbjct: 122 PDHPSSAASKQPI-VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
Query: 180 LTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL----INSTQPSG 224
LTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKK+++L + S P+G
Sbjct: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAG 229
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 119 bits (299), Expect = 2e-27
Identities = 96/257 (37%), Positives = 127/257 (49%), Gaps = 57/257 (22%)
Query: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGAS---------SLPDKT 51
MSSYFVNP F +G+ L A YD FP S G S S P
Sbjct: 1 MSSYFVNPLF-SKYKAGES-------LEPAYYDC--RFPQSVGRSHALVYGPGGSAPGFQ 50
Query: 52 YT---------------SPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQ 96
+ S YQQ+ L+C+ AS FY + L S G+ ++
Sbjct: 51 HASHHVQDFFHHGTSGISNSGYQQNPCSLSCHG-----DASKFYGYEALPRQSLYGAQQE 105
Query: 97 RGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGR 156
Y P+ + +++S +G+ ++ + S ++PWM+ + R
Sbjct: 106 ASVVQY----PDCKSSANTNSSEGQGHLNQNSS---PSLMFPWMR--------PHAPGRR 150
Query: 157 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL 216
GRQTY+RYQTLELEKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKEN
Sbjct: 151 SGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKEN-- 208
Query: 217 INSTQPSGEDSEAKAGE 233
N + G E K E
Sbjct: 209 -NKDKLPGARDEEKVEE 224
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 117 bits (292), Expect = 1e-26
Identities = 95/232 (40%), Positives = 123/232 (53%), Gaps = 45/232 (19%)
Query: 1 MSSYFVNPTF----------PGSLPSGQDSFLGQLPLYQAGYDALRPF--PAS-----YG 43
MSSYFVN F P G LG P G + F P+ +G
Sbjct: 1 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG 60
Query: 44 ASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYL 103
SSL T+P YQQ+ +AC+ FY L S G+ D +
Sbjct: 61 PSSLS----TAP--YQQNPCAVACHG-----DPGNFYGYDPLQRQSLFGAQDP----DLV 105
Query: 104 HFSPEQQYKPDSSSGQGKALHDEGADRKYT-SPVYPWMQRMNSCAGAVYGSHGRRGRQTY 162
++ K ++SG G+ EG+++ + + ++PWM R + AG RRGRQTY
Sbjct: 106 QYA---DCKLAAASGLGEEA--EGSEQSPSPTQLFPWM-RPQAAAGR------RRGRQTY 153
Query: 163 TRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
+RYQTLELEKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKEN
Sbjct: 154 SRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKEN 205
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 115 bits (289), Expect = 2e-26
Identities = 66/123 (53%), Positives = 79/123 (64%), Gaps = 12/123 (9%)
Query: 113 PDSSSGQGKALHDEGADRKYTSP--VYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLEL 170
PD S G D + +SP ++PWM R + G RRGRQTY+R+QTLEL
Sbjct: 160 PDCKSSSGNIGEDPDHLNQSSSPSQMFPWM-RPQAAPGR------RRGRQTYSRFQTLEL 212
Query: 171 EKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAK 230
EKEF FN YLTR+RRIE+++AL LTERQ+KIWFQNRRMKWKKEN N + E K
Sbjct: 213 EKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN---NKDKFPVSRQEVK 269
Query: 231 AGE 233
GE
Sbjct: 270 DGE 272
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 109 bits (272), Expect = 2e-24
Identities = 79/210 (37%), Positives = 98/210 (46%), Gaps = 33/210 (15%)
Query: 36 RPFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGK 95
+P+P ASSL S C Q S + A E SC + +G S G G
Sbjct: 48 QPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCM---RPGTGNSQGGGGG 104
Query: 96 QRGPGDYLHFSPEQQ---------YKPDSSSGQGKALHDEGADRKYTSP------VYPWM 140
+ PG P Q P + G A +G +S ++PWM
Sbjct: 105 SQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWM 164
Query: 141 Q-------RMNSCAGAVY--------GSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRR 185
+ + NSCA A G +R R YT Q +ELEKEFHFNRYL R RR
Sbjct: 165 KESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRR 224
Query: 186 IEIANALCLTERQIKIWFQNRRMKWKKENK 215
+E+AN L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYKKDQK 254
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 100 bits (250), Expect = 8e-22
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 99 PGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRG 158
PG+ +P+ P++ + G +E AD ++PV W+ ++ R+
Sbjct: 146 PGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARST----------RKK 195
Query: 159 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
R YT+YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK NK
Sbjct: 196 RCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNK 252
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 98.2 bits (243), Expect = 5e-21
Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 5/181 (2%)
Query: 37 PFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASY--EYGASCFYSDKDLSGASPSGSG 94
P PA+ +++ T S + SV ++ S E+ + F +K + +G G
Sbjct: 168 PAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPG 227
Query: 95 KQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSH 154
G S E D G +L +E +++++ P + N A ++
Sbjct: 228 AGIGAATGTGGSSEPSACSDHPI-PGCSLKEE--EKQHSQPQQQQLDPNNPAANWIHARS 284
Query: 155 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
R+ R YT+YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK +
Sbjct: 285 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
Query: 215 K 215
K
Sbjct: 345 K 345
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 95.5 bits (236), Expect = 3e-20
Identities = 55/113 (48%), Positives = 68/113 (60%), Gaps = 17/113 (15%)
Query: 136 VYPWMQ--RMN------------SCAGAVYG---SHGRRGRQTYTRYQTLELEKEFHFNR 178
++PWM+ R N SCAG + +R R YT Q +ELEKEFHFNR
Sbjct: 155 IFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNR 214
Query: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKA 231
YL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ K SG S +++
Sbjct: 215 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 95.5 bits (236), Expect = 3e-20
Identities = 55/113 (48%), Positives = 68/113 (60%), Gaps = 17/113 (15%)
Query: 136 VYPWMQ--RMN------------SCAGAVYG---SHGRRGRQTYTRYQTLELEKEFHFNR 178
++PWM+ R N SCAG + +R R YT Q +ELEKEFHFNR
Sbjct: 155 IFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNR 214
Query: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKA 231
YL R RR+E+AN L LTERQIKIWFQNRRMK+KK+ K SG S +++
Sbjct: 215 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 267
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 93.6 bits (231), Expect = 1e-19
Identities = 50/90 (55%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 145 SCAGAVYG---SHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKI 201
SCAG + +R R YT Q +ELEKEFHFNRYL R RR+E+AN L LTERQIKI
Sbjct: 20 SCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI 79
Query: 202 WFQNRRMKWKKENKLINSTQPSGEDSEAKA 231
WFQNRRMK+KK+ K SG S +++
Sbjct: 80 WFQNRRMKYKKDQKGKGMLTSSGGQSPSRS 109
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 92.8 bits (229), Expect = 2e-19
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
Query: 101 DYLHFSPEQQYKPDSSSG---QGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRR 157
DY SP + S G + A ++ G D+ P N A ++ R+
Sbjct: 156 DYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDP-------NNPAANWLHARSTRK 208
Query: 158 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
R YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK NK
Sbjct: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 92.8 bits (229), Expect = 2e-19
Identities = 46/74 (62%), Positives = 53/74 (71%)
Query: 156 RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
+R R YT Q +ELEKEFHFNRYL R RR+E+AN L L+ERQIKIWFQNRRMK+KK+ K
Sbjct: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
Query: 216 LINSTQPSGEDSEA 229
SG S A
Sbjct: 249 AKGLASSSGGPSPA 262
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 90.9 bits (224), Expect = 8e-19
Identities = 47/86 (54%), Positives = 57/86 (66%), Gaps = 9/86 (10%)
Query: 137 YPWMQRMNS------CAGAVYGSH---GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 187
+PWM+ + AG Y + +R R YTR Q LELEKEF FN+Y++R RR+E
Sbjct: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
Query: 188 IANALCLTERQIKIWFQNRRMKWKKE 213
+A L LTER IKIWFQNRRMKWKKE
Sbjct: 179 LAVMLNLTERHIKIWFQNRRMKWKKE 204
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 90.1 bits (222), Expect = 1e-18
Identities = 63/147 (42%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 89 SPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAG 148
SP+GS P L PE + + + + AL A + P
Sbjct: 76 SPAGSRGSPVPAGALQ-PPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLE 134
Query: 149 AVYGSHG--RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNR 206
GS G RR R YT Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNR
Sbjct: 135 IADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNR 194
Query: 207 RMKWK-----KENKLINSTQPSGEDSE 228
RMK K KEN+ S EDSE
Sbjct: 195 RMKHKRQTQCKENQNSEGKCKSLEDSE 221
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 89.7 bits (221), Expect = 2e-18
Identities = 45/72 (62%), Positives = 52/72 (72%)
Query: 144 NSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF 203
N A ++ R+ R YT+YQTLELEKEF FN YLTR RR E+A L L+ERQ+KIWF
Sbjct: 174 NPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWF 233
Query: 204 QNRRMKWKKENK 215
QNRRMK KK NK
Sbjct: 234 QNRRMKMKKMNK 245
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 88.6 bits (218), Expect = 4e-18
Identities = 42/72 (58%), Positives = 53/72 (73%)
Query: 144 NSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF 203
N+ + GR+ R YT++QTLELEKEF FN YLTR RR+EI+ + LT+RQ+KIWF
Sbjct: 257 NTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWF 316
Query: 204 QNRRMKWKKENK 215
QNRRMK KK N+
Sbjct: 317 QNRRMKLKKMNR 328
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 88.2 bits (217), Expect = 5e-18
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 155 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
GR+ R YT++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK N
Sbjct: 20 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMN 79
Query: 215 K 215
+
Sbjct: 80 R 80
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,456,676
Number of Sequences: 37866
Number of extensions: 516033
Number of successful extensions: 1618
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 342
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.