Guide to the Human Genome
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Name: HOXB9 Sequence: fasta or formatted (250aa) NCBI GI: 15029508
Description:

homeobox B9

Referenced in:

HOX Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         21           2
 C cysteine            1.2          3           1
 D aspartate           2.4          6           1
 E glutamate           8.8         22           1
 F phenylalanine       2.8          7           1
 G glycine             6.8         17           1
 H histidine           2.8          7           1
 I isoleucine          2.4          6           2
 K lysine              6.4         16           2
 L leucine             8.0         20           2
 M methionine          2.0          5           1
 N asparagine          3.2          8           1
 P proline             9.6         24           2
 Q glutamine           5.6         14           1
 R arginine            6.8         17           2
 S serine             10.4         26           2
 T threonine           3.2          8           1
 V valine              3.2          8           1
 W tryptophan          1.6          4           1
 Y tyrosine            4.4         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox B9 
HOXC9                 0.410   homeobox C9 
HOXA9                 0.402   homeobox A9 
HOXD9                 0.381   homeobox D9 
HOXD10                0.213   homeobox D10 
HOXC10                0.213   homeobox C10 
HOXA10                0.205   homeobox A10 isoform a 
HOXA10                0.201   homeobox A10 isoform b 
HOXD11                0.168   homeobox D11 
HOXA11                0.156   homeobox A11 
HOXC8                 0.148   homeobox C8 
HOXC5                 0.146   homeobox C5 
HOXB8                 0.146   homeobox B8 
HOXC11                0.146   homeobox C11 
HOXA4                 0.144   homeobox A4 
HOXA3                 0.138   homeobox A3 isoform a 
HOXA3                 0.138   homeobox A3 isoform a 
HOXD8                 0.138   homeobox D8 
HOXA5                 0.136   homeobox A5 
HOXA6                 0.132   homeobox A6 
HOXA7                 0.130   homeobox A7 
HOXB7                 0.130   homeobox B7 
HOXB5                 0.128   homeobox B5 
HOXB6                 0.124   homeobox B6 
HOXB3                 0.122   homeobox B3 
HOXA3                 0.122   homeobox A3 isoform b 
HOXD3                 0.120   homeobox D3 
HOXA13                0.120   homeobox A13 
HOXB4                 0.120   homeobox B4 
MEOX1                 0.120   mesenchyme homeobox 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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