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Search of human proteins with 58197556
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58197556 hypothetical protein LOC200205 [Homo sapiens]
(356 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58197556 hypothetical protein LOC200205 [Homo sapiens] 730 0.0
gi|222136611 poliovirus receptor-related 4 [Homo sapiens] 38 0.012
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 36 0.060
gi|73695936 ADAM metallopeptidase with thrombospondin type 1 mot... 34 0.18
gi|21265034 ADAM metallopeptidase with thrombospondin type 1 mot... 34 0.18
gi|34303939 exonuclease 3'-5' domain containing 1 [Homo sapiens] 32 0.87
gi|197927236 hypothetical protein LOC729627 [Homo sapiens] 32 1.1
gi|197927231 hypothetical protein LOC389152 [Homo sapiens] 32 1.1
gi|169213065 PREDICTED: similar to hCG1654128 [Homo sapiens] 31 1.5
gi|169213233 PREDICTED: similar to hCG1654128 [Homo sapiens] 31 1.5
gi|239748460 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens] 31 1.5
gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo ... 31 1.5
gi|213972621 ATPase type 13A2 isoform 3 [Homo sapiens] 31 1.5
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 31 1.5
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 31 1.9
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 31 1.9
gi|221316709 NADPH dependent diflavin oxidoreductase 1 isoform c... 31 1.9
gi|221316705 NADPH dependent diflavin oxidoreductase 1 isoform a... 31 1.9
gi|7657393 NADPH dependent diflavin oxidoreductase 1 isoform b [... 31 1.9
gi|61966747 hypothetical protein LOC389151 [Homo sapiens] 30 2.5
gi|15193488 BCL2 binding component 3 isoform 4 [Homo sapiens] 30 3.3
gi|23238244 sorting nexin 16 isoform a [Homo sapiens] 30 3.3
gi|23238246 sorting nexin 16 isoform a [Homo sapiens] 30 3.3
gi|134268642 killer cell immunoglobulin-like receptor, three dom... 30 4.3
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 30 4.3
gi|13540521 basic helix-loop-helix domain containing, class B, 3... 30 4.3
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 29 5.6
gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo ... 29 7.4
gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo ... 29 7.4
>gi|58197556 hypothetical protein LOC200205 [Homo sapiens]
Length = 356
Score = 730 bits (1885), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 1 MATAALLRGATPGRGGPVWRWRLRAAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLR 60
MATAALLRGATPGRGGPVWRWRLRAAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLR
Sbjct: 1 MATAALLRGATPGRGGPVWRWRLRAAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLR 60
Query: 61 VRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVILYGLQEHSE 120
VRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVILYGLQEHSE
Sbjct: 61 VRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVILYGLQEHSE 120
Query: 121 VSGFLLECDSSVQGALQKHLALYRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAG 180
VSGFLLECDSSVQGALQKHLALYRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAG
Sbjct: 121 VSGFLLECDSSVQGALQKHLALYRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAG 180
Query: 181 AAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVA 240
AAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVA
Sbjct: 181 AAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVA 240
Query: 241 LPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLPTSGITPGATVL 300
LPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLPTSGITPGATVL
Sbjct: 241 LPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLPTSGITPGATVL 300
Query: 301 TASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQVALAASVPDWWPTVSK 356
TASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQVALAASVPDWWPTVSK
Sbjct: 301 TASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQVALAASVPDWWPTVSK 356
>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
Length = 510
Score = 38.1 bits (87), Expect = 0.012
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 230 EGVRDLPPGVALPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLP 289
EG + PP PL+ ++ N V +G Y E T G + RL + PLP
Sbjct: 95 EGRVEQPPPPRNPLDGSVLLRNAVQADEGEY---ECRVSTFPAGSFQARLRLRVLVPPLP 151
Query: 290 TSGITPGATVLTASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQVALAAS 346
+ + PG + G T+ +G+ ++ W ++KG R+ + ++ A S
Sbjct: 152 S--LNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTS 206
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 35.8 bits (81), Expect = 0.060
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 281 PVRFLDPLPTSGITPGATVLTASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQ 340
P L PLP +PGA + AS QT A G +L + + P + A Q
Sbjct: 1602 PAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQ 1661
Query: 341 VALAASVPDWWPT 353
L A VP P+
Sbjct: 1662 TMLPAPVPSPLPS 1674
>gi|73695936 ADAM metallopeptidase with thrombospondin type 1 motif,
13 isoform 2 preproprotein [Homo sapiens]
Length = 1371
Score = 34.3 bits (77), Expect = 0.18
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 33 HSSCSPGGDPTAGAAWA-CFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPA 91
H S G P AG AW+ C R R LL + A + + P P P +AG PP
Sbjct: 247 HVMASDGAAPRAGLAWSPCSR---RQLLSLLSAGRARCVW-----DPPRPQPGSAGHPPD 298
Query: 92 ARAGYAHFLNVQGRTLY 108
A+ G + N Q R +
Sbjct: 299 AQPGLYYSANEQCRVAF 315
>gi|21265034 ADAM metallopeptidase with thrombospondin type 1 motif,
13 isoform 1 preproprotein [Homo sapiens]
Length = 1427
Score = 34.3 bits (77), Expect = 0.18
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 33 HSSCSPGGDPTAGAAWA-CFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPA 91
H S G P AG AW+ C R R LL + A + + P P P +AG PP
Sbjct: 247 HVMASDGAAPRAGLAWSPCSR---RQLLSLLSAGRARCVW-----DPPRPQPGSAGHPPD 298
Query: 92 ARAGYAHFLNVQGRTLY 108
A+ G + N Q R +
Sbjct: 299 AQPGLYYSANEQCRVAF 315
>gi|34303939 exonuclease 3'-5' domain containing 1 [Homo sapiens]
Length = 514
Score = 32.0 bits (71), Expect = 0.87
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 115 LQEHSEVSGFLLECDSSVQGALQKHLAL------YRIRRKVTVEPHPELRVWAVLPSSPE 168
LQ E G+L C +++Q +L KHL + + +R+ ++ +PE VW + P SP
Sbjct: 187 LQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPE--VWFIRPVSPS 244
Query: 169 ACGAASLQ 176
+L+
Sbjct: 245 LLKILALE 252
>gi|197927236 hypothetical protein LOC729627 [Homo sapiens]
Length = 266
Score = 31.6 bits (70), Expect = 1.1
Identities = 69/249 (27%), Positives = 95/249 (38%), Gaps = 49/249 (19%)
Query: 9 GATPGRGGPVWRWRLR--AAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRGPDA 66
G PG GP R RL A P R+A S P G P GA + L LRV D
Sbjct: 17 GQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSIVVLAAGCALRVPLDDV 76
Query: 67 APFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLY---DVILYGLQEHS---E 120
L ELP S +++ G TL +V+L + E S +
Sbjct: 77 D------LVLELPPTSILR--------------VSLDGHTLILIPEVLLSSVDERSGAQD 116
Query: 121 VSGFLLECDSSVQGALQKHLALYRIRRKVTVEPHPELRVWAVL------PSSPEACGAAS 174
S LE D + GAL++ + + ++V PE+ P PE
Sbjct: 117 DSSAGLEVDVFL-GALREDVV---VEQEVFCASVPEIAAQEEAYEEDADPEFPE----LQ 168
Query: 175 LQERAGAAAILIRDPRTARMGWRLLTQDEGPALVP-----GGRLGDLWDYHQHRYLQGVP 229
+ AG+AA L R+ +R E AL P G G +D + R L+ VP
Sbjct: 169 MDSAAGSAAGLYSSARSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFD-PEFRLLEPVP 227
Query: 230 EG-VRDLPP 237
++ LPP
Sbjct: 228 SSPLQPLPP 236
>gi|197927231 hypothetical protein LOC389152 [Homo sapiens]
Length = 262
Score = 31.6 bits (70), Expect = 1.1
Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 9 GATPGRGGPVWRWRLR--AAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLRV 61
G PG GP R RL A P R A S P G P A + LD LRV
Sbjct: 17 GQQPGGPGPAKRSRLEEPAGPESRAAPSPEDPAGTPAVDALTSMVVLDAGCALRV 71
>gi|169213065 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 851
Score = 31.2 bits (69), Expect = 1.5
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 164 PSSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHR 223
P +PEACG +SLQ RA P G L +Q + L D Q
Sbjct: 608 PRAPEACGVSSLQPRA---------PEACSPGRALGSQTSSKGFPNTSEMAVLADPRQGL 658
Query: 224 YLQGVPEGVRDLP 236
V EG + LP
Sbjct: 659 VAVSVAEGQKSLP 671
>gi|169213233 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 1070
Score = 31.2 bits (69), Expect = 1.5
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 164 PSSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHR 223
P +PEACG +SLQ RA P G L +Q + L D Q
Sbjct: 827 PRAPEACGVSSLQPRA---------PEACSPGRALGSQTSSKGFPNTSEMAVLADPRQGL 877
Query: 224 YLQGVPEGVRDLP 236
V EG + LP
Sbjct: 878 VAVSVAEGQKSLP 890
>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 6 LLRGATP-----GRGGPVWRWRLRAAPRCRLAHSSCSPGGDPTAGAAWACFRLDGR---- 56
LL A P G G WR R RA C S P G P + + A RL
Sbjct: 69 LLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTT 128
Query: 57 --TLLRVRGPDAA--PFLLGLLTNELPLPSPAAAGA 88
+L GP A L G + + P P+P +GA
Sbjct: 129 SPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGA 164
>gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 1015
Score = 31.2 bits (69), Expect = 1.5
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 164 PSSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHR 223
P +PEACG +SLQ RA P G L +Q + L D Q
Sbjct: 772 PRAPEACGVSSLQPRA---------PEACSPGRALGSQTSSKGFPNTSEMAVLADPRQGL 822
Query: 224 YLQGVPEGVRDLP 236
V EG + LP
Sbjct: 823 VAVSVAEGQKSLP 835
>gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
sapiens]
Length = 272
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 6 LLRGATP-----GRGGPVWRWRLRAAPRCRLAHSSCSPGGDPTAGAAWACFRLDGR---- 56
LL A P G G WR R RA C S P G P + + A RL
Sbjct: 69 LLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTT 128
Query: 57 --TLLRVRGPDAA--PFLLGLLTNELPLPSPAAAGA 88
+L GP A L G + + P P+P +GA
Sbjct: 129 SPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGA 164
>gi|213972621 ATPase type 13A2 isoform 3 [Homo sapiens]
Length = 1158
Score = 31.2 bits (69), Expect = 1.5
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 67 APFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQG 104
APF L TNE P P APP A+AG L G
Sbjct: 1025 APFRRPLYTNERARPVPPRLPAPPPAQAGLQEALQAAG 1062
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 31.2 bits (69), Expect = 1.5
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 38 PGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYA 97
PG GA +G ++L V GP P +G P P A A PA G+
Sbjct: 796 PGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGP-----PGPPGAPGPAGPAGLPGHQ 850
Query: 98 HFLNVQG 104
LN+QG
Sbjct: 851 EVLNLQG 857
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 30.8 bits (68), Expect = 1.9
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 1 MATAALLRGATPGRGGPVWRWRL-RAAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLL 59
+A+A L RG P +WR R P SPG + G L RTL
Sbjct: 164 LASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGV-----ELHARTL- 217
Query: 60 RVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHF 99
+ P AP L P P+P AA P A + HF
Sbjct: 218 SLPAPSPAPCL--------PPPAPPAARTPSAHSPAHTHF 249
>gi|148806908 fibronectin type III domain containing 1 [Homo
sapiens]
Length = 1894
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 55 GRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQG 104
GRT +R R P A P G+ L + GAPP+A A AH + QG
Sbjct: 580 GRTAVRARMP-ALPRREGVDKPGFSLATQPRPGAPPSASASPAHHASTQG 628
>gi|221316709 NADPH dependent diflavin oxidoreductase 1 isoform c
[Homo sapiens]
Length = 590
Score = 30.8 bits (68), Expect = 1.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 204 GPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVALPLESNLAFM 250
GP L DLWD Y P G+ ++PPGV LP + L F+
Sbjct: 137 GPDAAVDPWLRDLWDRVLGLYPP--PPGLTEIPPGVPLPSKFTLLFL 181
>gi|221316705 NADPH dependent diflavin oxidoreductase 1 isoform a
[Homo sapiens]
Length = 606
Score = 30.8 bits (68), Expect = 1.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 204 GPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVALPLESNLAFM 250
GP L DLWD Y P G+ ++PPGV LP + L F+
Sbjct: 137 GPDAAVDPWLRDLWDRVLGLYPP--PPGLTEIPPGVPLPSKFTLLFL 181
>gi|7657393 NADPH dependent diflavin oxidoreductase 1 isoform b
[Homo sapiens]
Length = 597
Score = 30.8 bits (68), Expect = 1.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 204 GPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVALPLESNLAFM 250
GP L DLWD Y P G+ ++PPGV LP + L F+
Sbjct: 137 GPDAAVDPWLRDLWDRVLGLYPP--PPGLTEIPPGVPLPSKFTLLFL 181
>gi|61966747 hypothetical protein LOC389151 [Homo sapiens]
Length = 265
Score = 30.4 bits (67), Expect = 2.5
Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 9 GATPGRGGPVWRWRLR--AAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLRV 61
G PG GP R RL A P R A S P GDP A + L LRV
Sbjct: 17 GQQPGGPGPAKRLRLEEPAGPEPRAAPSLEDPAGDPAVDALTSIVVLAAGCALRV 71
>gi|15193488 BCL2 binding component 3 isoform 4 [Homo sapiens]
Length = 193
Score = 30.0 bits (66), Expect = 3.3
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 25 AAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRG--PDAAPFLLGLLTNELPLPS 82
AAP A C+P P AA R G R RG PD L L L P
Sbjct: 49 AAPTLLPAAYLCAPTAPPAVTAALGGSRWPGGPRSRPRGPRPDGPQPSLSLAEQHLESPV 108
Query: 83 PAAAGA 88
P+A GA
Sbjct: 109 PSAPGA 114
>gi|23238244 sorting nexin 16 isoform a [Homo sapiens]
Length = 344
Score = 30.0 bits (66), Expect = 3.3
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 143 YRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAGAAAILIRDPRTARMGW 196
Y R + T E +PE W PS+P G ++ERA I +T W
Sbjct: 86 YSTRPRDTEEQNPETVNWEDRPSTPTILGYEVMEERAKFTVYKILVKKTPEESW 139
>gi|23238246 sorting nexin 16 isoform a [Homo sapiens]
Length = 344
Score = 30.0 bits (66), Expect = 3.3
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 143 YRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAGAAAILIRDPRTARMGW 196
Y R + T E +PE W PS+P G ++ERA I +T W
Sbjct: 86 YSTRPRDTEEQNPETVNWEDRPSTPTILGYEVMEERAKFTVYKILVKKTPEESW 139
>gi|134268642 killer cell immunoglobulin-like receptor, three
domains, long cytoplasmic tail, 2 precursor [Homo
sapiens]
Length = 455
Score = 29.6 bits (65), Expect = 4.3
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 14 RGGPVWRWRLRAAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLGL 73
R G RLRA P+ + P G T G + CF R L V + P L+ +
Sbjct: 257 REGEAHERRLRAVPKVNRTFQADFPLGPATHGGTYRCFG-SFRALPCVWSNSSDPLLVSV 315
Query: 74 LTN-ELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVILY 113
N PSP P++++G L+V T + L+
Sbjct: 316 TGNPSSSWPSP----TEPSSKSGICRHLHVLIGTSVVIFLF 352
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 29.6 bits (65), Expect = 4.3
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 241 LPLESNL---AFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLPTSGITPGA 297
LPL++ L +G S C +G H G+ L P+R L L G G
Sbjct: 512 LPLQNLLQVKGLFDGTSGCPHCGLGGHRAHFLPHAGLAGTELLPLRLLAQLAPQGCAEGW 571
Query: 298 TVLTASG---QTVGKFRAGQ 314
VL G Q G R G+
Sbjct: 572 LVLQGEGEGPQAQGPLREGR 591
>gi|13540521 basic helix-loop-helix domain containing, class B, 3
[Homo sapiens]
Length = 482
Score = 29.6 bits (65), Expect = 4.3
Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 13 GRGGPVWRWRLRAAPRCRLAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLG 72
G G P + AAP C L SP +A AA+ LD L + P AA
Sbjct: 332 GGGAPFPQPAAAAAPFC-LPFCFLSP----SAAAAYVQPFLDKSGLEKYLYPAAAAAPFP 386
Query: 73 LLTNELPLPSPAAAGAPPAARAGYA 97
LL +P P+ AAA A AA A A
Sbjct: 387 LLYPGIPAPAAAAAAAAAAAAAAAA 411
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 29.3 bits (64), Expect = 5.6
Identities = 48/161 (29%), Positives = 60/161 (37%), Gaps = 44/161 (27%)
Query: 31 LAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPP 90
L+H S S G P G +CF GP AAP P P P A+ APP
Sbjct: 75 LSHLS-SEGAAPDRGGLRSCFP---------PGPAAAP-------TPPPCPPPPASPAPP 117
Query: 91 AARAGYAHFLNVQGRTLYDVILYGLQEHSEV--SGFLLECDSSVQGALQKHLAL--YRIR 146
A A V G + GL+ H L+C S+ + ++LAL YR
Sbjct: 118 ACAAE-----PVPG-------VAGLRNHGNTCFMNATLQCLSNTE-LFAEYLALGQYRAG 164
Query: 147 RKVTVEPHPELRVWAVLPSSPEACGAASLQERAGAAAILIR 187
R EP P+ P P GA E A L+R
Sbjct: 165 RP---EPSPD-------PEQPAGRGAQGQGEVTEQLAHLVR 195
>gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo
sapiens]
Length = 277
Score = 28.9 bits (63), Expect = 7.4
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 165 SSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRY 224
+SP A+L RAG+ I R G + Q+ P GR +H
Sbjct: 101 NSPRTTPKAALSSRAGSGRI---GERQGTQGKKKKAQEGTPVCQTRGRSPSRTSFHGETQ 157
Query: 225 LQGVPEG 231
+ G PEG
Sbjct: 158 IPGAPEG 164
>gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo
sapiens]
Length = 277
Score = 28.9 bits (63), Expect = 7.4
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 165 SSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRY 224
+SP A+L RAG+ I R G + Q+ P GR +H
Sbjct: 101 NSPRTTPKAALSSRAGSGRI---GERQGTQGKKKKAQEGTPVCQTRGRSPSRTSFHGETQ 157
Query: 225 LQGVPEG 231
+ G PEG
Sbjct: 158 IPGAPEG 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,044,927
Number of Sequences: 37866
Number of extensions: 831298
Number of successful extensions: 2420
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2400
Number of HSP's gapped (non-prelim): 43
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.