Guide to the Human Genome
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Name: LOC100132713 Sequence: fasta or formatted (851aa) NCBI GI: 169213065
Description:

PREDICTED: similar to hCG1654128

Not currently referenced in the text

Other entries for this name:
alt prot {1015aa} PREDICTED: similar to hCG1654128
alt prot {1070aa} PREDICTED: similar to hCG1654128
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         56           2
 C cysteine            2.5         21           2
 D aspartate           6.5         55           1
 E glutamate          10.5         89           2
 F phenylalanine       1.4         12           1
 G glycine             8.1         69           2
 H histidine           3.5         30           1
 I isoleucine          2.0         17           2
 K lysine              3.4         29           2
 L leucine             6.1         52           2
 M methionine          2.1         18           1
 N asparagine          1.5         13           1
 P proline             9.6         82           2
 Q glutamine           5.5         47           2
 R arginine            5.3         45           3
 S serine             11.0         94           3
 T threonine           4.8         41           2
 V valine              5.5         47           2
 W tryptophan          1.8         15           1
 Y tyrosine            2.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1654128 
LOC100132713          0.990   PREDICTED: similar to hCG1654128 
LOC100132713          0.913   PREDICTED: similar to hCG1654128 
DPCR1                 0.041   diffuse panbronchiolitis critical region 1 protein ...
LOC100294236          0.036   PREDICTED: similar to diffuse panbronchiolitis crit...
RP1L1                 0.030   retinitis pigmentosa 1-like 1 
RPGR                  0.026   retinitis pigmentosa GTPase regulator isoform C [Hom...
NSBP1                 0.022   nucleosomal binding protein 1 
MDN1                  0.020   MDN1, midasin homolog 
BDP1                  0.020   transcription factor-like nuclear regulator 
ACRC                  0.019   ACRC protein 
CENPB                 0.019   centromere protein B 
DMP1                  0.017   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.017   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
SETD1B                0.017   SET domain containing 1B 
HRC                   0.017   histidine rich calcium binding protein precursor [Hom...
MAP1B                 0.017   microtubule-associated protein 1B 
ZC3H18                0.017   zinc finger CCCH-type containing 18 
KIAA1429              0.015   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.015   hypothetical protein LOC25962 isoform 2 
ERICH1                0.015   glutamate-rich 1 
SMTNL1                0.014   smoothelin-like 1 
TGOLN2                0.014   trans-golgi network protein 2 
NEFM                  0.014   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.014   neurofilament, medium polypeptide 150kDa isoform 2 ...
ANP32B                0.014   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
PAF1                  0.014   Paf1, RNA polymerase II associated factor, homolog [...
NCL                   0.014   nucleolin 
PELP1                 0.014   proline, glutamic acid and leucine rich protein 1 [...
HTATSF1               0.013   HIV-1 Tat specific factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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