Guide to the Human Genome
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Name: LOC389151 Sequence: fasta or formatted (265aa) NCBI GI: 61966747
Description:

hypothetical protein LOC389151

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         28           2
 C cysteine            1.9          5           1
 D aspartate           5.3         14           2
 E glutamate           9.1         24           2
 F phenylalanine       3.0          8           1
 G glycine             6.4         17           2
 H histidine           1.1          3           1
 I isoleucine          3.0          8           1
 K lysine              0.8          2           1
 L leucine            10.6         28           2
 M methionine          1.1          3           1
 N asparagine          0.4          1           1
 P proline            16.2         43           2
 Q glutamine           2.3          6           2
 R arginine            7.9         21           3
 S serine              9.8         26           2
 T threonine           1.5          4           1
 V valine              7.2         19           3
 W tryptophan          0.8          2           2
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389151 
LOC729627             0.872   hypothetical protein LOC729627 
FLJ46210              0.804   hypothetical protein LOC389152 
MLL2                  0.041   myeloid/lymphoid or mixed-lineage leukemia 2 
WHSC2                 0.033   Wolf-Hirschhorn syndrome candidate 2 protein 
TBKBP1                0.029   TBK1 binding protein 1 
SETD1A                0.027   SET domain containing 1A 
PRR12                 0.027   proline rich 12 
LOC100131608          0.027   PREDICTED: hypothetical protein 
LOC100133251          0.027   PREDICTED: hypothetical protein 
LOC100131608          0.027   PREDICTED: hypothetical protein 
SHANK1                0.025   SH3 and multiple ankyrin repeat domains 1 
TROAP                 0.025   tastin isoform 1 
ENAH                  0.023   enabled homolog isoform a 
ENAH                  0.023   enabled homolog isoform b 
ZNF828                0.023   zinc finger protein 828 
UBN2                  0.023   ubinuclein 2 
MAP1A                 0.023   microtubule-associated protein 1A 
SFPQ                  0.023   splicing factor proline/glutamine rich (polypyrimidin...
NEFM                  0.023   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.023   neurofilament, medium polypeptide 150kDa isoform 2 ...
C16orf7               0.023   chromosome 16 open reading frame 7 
C9orf86               0.021   Rab-like GTP-binding protein 1 isoform 2 
LOC100291797          0.021   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.021   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.021   PREDICTED: hypothetical protein XP_002342316 
RBCK1                 0.021   RanBP-type and C3HC4-type zinc finger containing 1 is...
RBCK1                 0.021   RanBP-type and C3HC4-type zinc finger containing 1 ...
PELP1                 0.021   proline, glutamic acid and leucine rich protein 1 [...
CABIN1                0.021   calcineurin binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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