Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132713 Sequence: fasta or formatted (1070aa) NCBI GI: 169213233
Description:

PREDICTED: similar to hCG1654128

Not currently referenced in the text

Other entries for this name:
alt prot {1015aa} PREDICTED: similar to hCG1654128
alt prot {851aa} PREDICTED: similar to hCG1654128
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         72           2
 C cysteine            2.6         28           2
 D aspartate           5.5         59           1
 E glutamate           9.6        103           2
 F phenylalanine       1.7         18           2
 G glycine             8.4         90           2
 H histidine           3.6         38           1
 I isoleucine          2.1         22           2
 K lysine              3.3         35           2
 L leucine             6.4         69           3
 M methionine          2.1         23           1
 N asparagine          1.4         15           1
 P proline             9.8        105           3
 Q glutamine           5.6         60           2
 R arginine            5.8         62           3
 S serine             10.8        116           3
 T threonine           5.1         55           2
 V valine              6.2         66           2
 W tryptophan          1.4         15           1
 Y tyrosine            1.8         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1654128 
LOC100132713          0.904   PREDICTED: similar to hCG1654128 
LOC100132713          0.791   PREDICTED: similar to hCG1654128 
DPCR1                 0.033   diffuse panbronchiolitis critical region 1 protein ...
LOC100294236          0.026   PREDICTED: similar to diffuse panbronchiolitis crit...
RP1L1                 0.025   retinitis pigmentosa 1-like 1 
RPGR                  0.020   retinitis pigmentosa GTPase regulator isoform C [Hom...
ACRC                  0.017   ACRC protein 
NSBP1                 0.017   nucleosomal binding protein 1 
MDN1                  0.015   MDN1, midasin homolog 
CENPB                 0.015   centromere protein B 
DMP1                  0.014   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.014   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
ZC3H18                0.013   zinc finger CCCH-type containing 18 
SETD1B                0.013   SET domain containing 1B 
KIAA1429              0.013   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.013   hypothetical protein LOC25962 isoform 2 
BDP1                  0.012   transcription factor-like nuclear regulator 
HRC                   0.012   histidine rich calcium binding protein precursor [Hom...
DSPP                  0.011   dentin sialophosphoprotein preproprotein 
FLG                   0.011   filaggrin 
SETD1A                0.011   SET domain containing 1A 
ANP32B                0.011   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
PPM1G                 0.010   protein phosphatase 1G 
PPM1G                 0.010   protein phosphatase 1G 
ANP32E                0.010   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.010   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.010   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ERICH1                0.010   glutamate-rich 1 
HTATSF1               0.010   HIV-1 Tat specific factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press