Search of human proteins with 5729986

Search of human proteins with 5729986

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5729986 processing of precursor 4 [Homo sapiens]
         (220 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5729986 processing of precursor 4 [Homo sapiens]                   434   e-122
gi|124487382 COMM domain containing 5 [Homo sapiens]                   33   0.19 
gi|154800418 COMM domain containing 5 [Homo sapiens]                   33   0.19 
gi|19923430 COMM domain containing 5 [Homo sapiens]                    33   0.19 
gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [H...    33   0.25 
gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]                       32   0.56 
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]                      32   0.56 
gi|119395734 breast cancer 2, early onset [Homo sapiens]               30   1.2  
gi|74272284 membrane associated guanylate kinase, WW and PDZ dom...    30   1.2  
gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens]         30   1.2  
gi|148746195 trichohyalin [Homo sapiens]                               30   2.1  
gi|224458301 family with sequence similarity 186, member A [Homo...    29   2.8  
gi|161702986 ezrin [Homo sapiens]                                      29   2.8  
gi|21614499 ezrin [Homo sapiens]                                       29   2.8  
gi|21389501 coiled-coil domain containing 52 [Homo sapiens]            29   2.8  
gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens]         29   2.8  
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo...    29   3.6  
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo...    29   3.6  
gi|18466802 Ras and Rab interactor 2 [Homo sapiens]                    29   3.6  
gi|239735592 TRAF2 and NCK interacting kinase isoform 8 [Homo sa...    28   4.7  
gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo sa...    28   4.7  
gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo sa...    28   4.7  
gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo sa...    28   4.7  
gi|239735584 TRAF2 and NCK interacting kinase isoform 4 [Homo sa...    28   4.7  
gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo sa...    28   4.7  
gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo sa...    28   4.7  
gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sap...    28   4.7  
gi|89886453 TBC1 domain family, member 24 [Homo sapiens]               28   4.7  
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso...    28   4.7  
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso...    28   4.7  

>gi|5729986 processing of precursor 4 [Homo sapiens]
          Length = 220

 Score =  434 bits (1117), Expect = e-122
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY 60
           MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY
Sbjct: 1   MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY 60

Query: 61  FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD 120
           FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD
Sbjct: 61  FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD 120

Query: 121 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL 180
           TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL
Sbjct: 121 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL 180

Query: 181 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL 220
           NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL
Sbjct: 181 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL 220


>gi|124487382 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 91  PEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISV 142
           PE+Q  +L   +H L +Q +R   + LKPDT    +Q   +  DL G + SV
Sbjct: 78  PEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASV 129


>gi|154800418 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 91  PEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISV 142
           PE+Q  +L   +H L +Q +R   + LKPDT    +Q   +  DL G + SV
Sbjct: 78  PEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASV 129


>gi|19923430 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 91  PEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISV 142
           PE+Q  +L   +H L +Q +R   + LKPDT    +Q   +  DL G + SV
Sbjct: 78  PEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASV 129


>gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [Homo
           sapiens]
          Length = 691

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 25  QRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQR--- 81
           +R EAF R FL        P  +E++   + +++EYFT  + K+ KKK       Q+   
Sbjct: 114 ERLEAFTRDFL--------PHMKEEEEVFQPMLMEYFTYEELKDIKKKVIAQHCSQKDTA 165

Query: 82  ---RELRLFDIKPEQQRY 96
              R L L++   E+Q++
Sbjct: 166 ELLRGLSLWNHAEERQKF 183


>gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]
          Length = 1049

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 6   YHALSQKEANDSDVQPS-------GAQRAEAFVRAFLKRSTPRMSPQAREDQLQR----- 53
           + A+ +KEA  +  +         G Q+ E       ++ T ++  +  +++LQ      
Sbjct: 546 HQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYKLRKEQLKEELQENPSTP 605

Query: 54  KAVVLEYFTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDL 113
           K    E+  R K + ++ +A+  +   RR+ + F+++  Q +  + L  H L +  +R+ 
Sbjct: 606 KREKAEWLLRQKEQLQQCQAEEEAGLLRRQRQYFELQCRQYKRKMLLARHSLDQDLLRED 665

Query: 114 CSGLKPDTQPQMIQAKLLK 132
            +  K  TQ  +  A LL+
Sbjct: 666 LN--KKQTQKDLECALLLR 682


>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 14/139 (10%)

Query: 6   YHALSQKEANDSDVQPS-------GAQRAEAFVRAFLKRSTPRMSPQAREDQLQR----- 53
           + A+ +KEA  +  +         G Q+ E       ++ T ++  +  +++LQ      
Sbjct: 546 HQAIGEKEARAAQAEERKFQQHILGQQKKELAALLEAQKRTYKLRKEQLKEELQENPSTP 605

Query: 54  KAVVLEYFTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDL 113
           K    E+  R K + ++ +A+  +   RR+ + F+++  Q +  + L  H L +  +R+ 
Sbjct: 606 KREKAEWLLRQKEQLQQCQAEEEAGLLRRQRQYFELQCRQYKRKMLLARHSLDQDLLRED 665

Query: 114 CSGLKPDTQPQMIQAKLLK 132
            +  K  TQ  +  A LL+
Sbjct: 666 LN--KKQTQKDLECALLLR 682


>gi|119395734 breast cancer 2, early onset [Homo sapiens]
          Length = 3418

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 60   YFTRHKRKEKKKKAKGLSARQRRELRLFD------IKPEQQRYSLFLPLHELWKQYIRDL 113
            Y  R++R+E+K+ AK + A+Q+R   LF        + E+     +LP   L +Q +R L
Sbjct: 2839 YIFRNEREEEKEAAKYVEAQQKRLEALFTKIQEEFEEHEENTTKPYLPSRALTRQQVRAL 2898

Query: 114  CSG 116
              G
Sbjct: 2899 QDG 2901


>gi|74272284 membrane associated guanylate kinase, WW and PDZ domain
            containing 1 isoform c [Homo sapiens]
          Length = 1462

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 18   DVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKRKEKKKKAKGLS 77
            D  P G + A+A  RA       R SP+ R +  +     LE      R+EK +K + +S
Sbjct: 1298 DRAPEGRRDAQA-ERAAAANGPKRRSPEKRREGTRSADNTLE------RREKHEKRRDVS 1350

Query: 78   ARQRRE---LRLFDIKPEQQRYSL 98
              +RRE    R  D  P ++R SL
Sbjct: 1351 PERRRERSPTRRRDGSPSRRRRSL 1374


>gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens]
          Length = 832

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 3/98 (3%)

Query: 102 LHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISVTKSKCPSY---VGITGILL 158
           LH L+   IR     L  D    ++   ++   L    + +  +   SY   +GI  +LL
Sbjct: 669 LHVLYTDCIRQCSGPLYVDRMVLLVMGNVINWSLAAYGLIMRPNDFASYLLAIGICNLLL 728

Query: 159 QETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYIY 196
               +I   +   +R+K+IP L  V T    GF  + +
Sbjct: 729 YFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALFFF 766


>gi|148746195 trichohyalin [Homo sapiens]
          Length = 1943

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 47  REDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHE 104
           RE++ +++ +  E   R +++ K+++ + L   +RRE RL   +PE++R    L   E
Sbjct: 581 REEERRQQRLKREQEERLEQRLKREEVERLEQEERREQRLKREEPEEERRQQLLKSEE 638


>gi|224458301 family with sequence similarity 186, member A [Homo
            sapiens]
          Length = 2351

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 20/122 (16%)

Query: 12   KEANDSDVQPSGAQRAEAFVRAFLKR---STPRMSPQA--------REDQLQRKAVVL-E 59
            K+A   + Q    Q  E   ++ L+R    T +M  Q         +  Q+Q++A  L  
Sbjct: 899  KQAEQEEKQKQRGQEEEELPKSSLQRLEEGTQKMKTQGLLLEKENGQMRQIQKEAKHLGP 958

Query: 60   YFTRHKRKEKKKKAKGLSARQRR-----ELRLFDIKPEQQRYSLF---LPLHELWKQYIR 111
            +  R K KEK+K  +GL   +R+     ++++ + +P++    +    + L   WK  ++
Sbjct: 959  HRRREKGKEKQKPERGLEDLERQIKTKDQMQMKETQPKELEKMVIQTPMTLSPRWKSVLK 1018

Query: 112  DL 113
            D+
Sbjct: 1019 DV 1020


>gi|161702986 ezrin [Homo sapiens]
          Length = 586

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 41  RMSPQAREDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRE--LRLFDIKPEQQRYSL 98
           +M  QARE++ Q++    +  T  KR+E  ++ K    R++ E  LRL D + + ++   
Sbjct: 304 QMKAQAREEKHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAE- 362

Query: 99  FLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAI 139
                EL +Q  R L   L+ + +    +A+ L+AD   A+
Sbjct: 363 ----RELSEQIQRAL--QLEEERKRAQEEAERLEADRMAAL 397


>gi|21614499 ezrin [Homo sapiens]
          Length = 586

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 41  RMSPQAREDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRE--LRLFDIKPEQQRYSL 98
           +M  QARE++ Q++    +  T  KR+E  ++ K    R++ E  LRL D + + ++   
Sbjct: 304 QMKAQAREEKHQKQLERQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAE- 362

Query: 99  FLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAI 139
                EL +Q  R L   L+ + +    +A+ L+AD   A+
Sbjct: 363 ----RELSEQIQRAL--QLEEERKRAQEEAERLEADRMAAL 397


>gi|21389501 coiled-coil domain containing 52 [Homo sapiens]
          Length = 855

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 3   SVIYHALSQKEANDSDVQP---------SGAQRAEAFVRAFLKRSTPRMSPQAREDQLQR 53
           S ++  + QK A  S + P         SG QRA       +KR   R+ P+   + L  
Sbjct: 218 SKLWTDIQQKIATQSQITPPGTPSSALSSGEQRAALNATNAVKRLQTRLQPEESTETLDS 277

Query: 54  KAVVLEYFTRHKRKEKKKKAK 74
             VV       K+K+   K K
Sbjct: 278 SYVVGHVLNSRKQKQLLNKVK 298


>gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens]
          Length = 251

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 46 AREDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRELRL 86
          A+ D   +KA +++Y +  K  +  K +KGL AR +R L++
Sbjct: 49 AKLDLKAKKAQLMQYLSLPKTPKMLKMSKGLDARSKRWLKI 89


>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform
           b [Homo sapiens]
          Length = 1524

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 29  AFVRAFLKRSTP---RMSPQAREDQLQR----KAVVLEYFTRHKRKEKKKKAKGLSARQR 81
           AF +A LKR          + +ED+ ++    K +V E   R K+KE+K++ K    ++R
Sbjct: 321 AFEKAKLKREKADALEAKKKEKEDKEKKREELKKIVEE--ERLKKKEEKERLKVEREKER 378

Query: 82  RELRLFDIKPEQQRYSLFLPLHELWKQYIRDL-CSGLKPDTQPQMIQAKL 130
            +LR      E+++Y  +L   + W +   D+ C  LK   +P  ++ +L
Sbjct: 379 EKLR-----EEKRKYVEYL---KQWSKPREDMECDDLKELPEPTPVKTRL 420


>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform
           a [Homo sapiens]
          Length = 1556

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 29  AFVRAFLKRSTP---RMSPQAREDQLQR----KAVVLEYFTRHKRKEKKKKAKGLSARQR 81
           AF +A LKR          + +ED+ ++    K +V E   R K+KE+K++ K    ++R
Sbjct: 321 AFEKAKLKREKADALEAKKKEKEDKEKKREELKKIVEE--ERLKKKEEKERLKVEREKER 378

Query: 82  RELRLFDIKPEQQRYSLFLPLHELWKQYIRDL-CSGLKPDTQPQMIQAKL 130
            +LR      E+++Y  +L   + W +   D+ C  LK   +P  ++ +L
Sbjct: 379 EKLR-----EEKRKYVEYL---KQWSKPREDMECDDLKELPEPTPVKTRL 420


>gi|18466802 Ras and Rab interactor 2 [Homo sapiens]
          Length = 895

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 8/39 (20%)

Query: 92  EQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKL 130
           + + YSLFL + E W+Q        L  DT PQ I+A+L
Sbjct: 830 DPEEYSLFLFVDETWQQ--------LAEDTYPQKIKAEL 860


>gi|239735592 TRAF2 and NCK interacting kinase isoform 8 [Homo
           sapiens]
          Length = 1268

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 19  VQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKR-KEKKKKAKGLS 77
           +Q +  +R+EA  R  L++       Q RE++  ++ ++ E   R KR +E+K++ + L 
Sbjct: 357 LQLANKERSEALRRQQLEQ-------QQRENEEHKRQLLAE---RQKRIEEQKEQRRRLE 406

Query: 78  ARQRRELRLFDIKPEQQR 95
            +QRRE  L   +  +QR
Sbjct: 407 EQQRREKELRKQQEREQR 424


>gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo
           sapiens]
          Length = 1276

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 19  VQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKR-KEKKKKAKGLS 77
           +Q +  +R+EA  R  L++       Q RE++  ++ ++ E   R KR +E+K++ + L 
Sbjct: 357 LQLANKERSEALRRQQLEQ-------QQRENEEHKRQLLAE---RQKRIEEQKEQRRRLE 406

Query: 78  ARQRRELRLFDIKPEQQR 95
            +QRRE  L   +  +QR
Sbjct: 407 EQQRREKELRKQQEREQR 424


>gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo
           sapiens]
          Length = 1297

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 19  VQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKR-KEKKKKAKGLS 77
           +Q +  +R+EA  R  L++       Q RE++  ++ ++ E   R KR +E+K++ + L 
Sbjct: 357 LQLANKERSEALRRQQLEQ-------QQRENEEHKRQLLAE---RQKRIEEQKEQRRRLE 406

Query: 78  ARQRRELRLFDIKPEQQR 95
            +QRRE  L   +  +QR
Sbjct: 407 EQQRREKELRKQQEREQR 424


>gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo
           sapiens]
          Length = 1305

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 19  VQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKR-KEKKKKAKGLS 77
           +Q +  +R+EA  R  L++       Q RE++  ++ ++ E   R KR +E+K++ + L 
Sbjct: 357 LQLANKERSEALRRQQLEQ-------QQRENEEHKRQLLAE---RQKRIEEQKEQRRRLE 406

Query: 78  ARQRRELRLFDIKPEQQR 95
            +QRRE  L   +  +QR
Sbjct: 407 EQQRREKELRKQQEREQR 424


>gi|239735584 TRAF2 and NCK interacting kinase isoform 4 [Homo
           sapiens]
          Length = 1323

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 19  VQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKR-KEKKKKAKGLS 77
           +Q +  +R+EA  R  L++       Q RE++  ++ ++ E   R KR +E+K++ + L 
Sbjct: 357 LQLANKERSEALRRQQLEQ-------QQRENEEHKRQLLAE---RQKRIEEQKEQRRRLE 406

Query: 78  ARQRRELRLFDIKPEQQR 95
            +QRRE  L   +  +QR
Sbjct: 407 EQQRREKELRKQQEREQR 424


>gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo
           sapiens]
          Length = 1331

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 19  VQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKR-KEKKKKAKGLS 77
           +Q +  +R+EA  R  L++       Q RE++  ++ ++ E   R KR +E+K++ + L 
Sbjct: 357 LQLANKERSEALRRQQLEQ-------QQRENEEHKRQLLAE---RQKRIEEQKEQRRRLE 406

Query: 78  ARQRRELRLFDIKPEQQR 95
            +QRRE  L   +  +QR
Sbjct: 407 EQQRREKELRKQQEREQR 424


>gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo
           sapiens]
          Length = 1352

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 19  VQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKR-KEKKKKAKGLS 77
           +Q +  +R+EA  R  L++       Q RE++  ++ ++ E   R KR +E+K++ + L 
Sbjct: 357 LQLANKERSEALRRQQLEQ-------QQRENEEHKRQLLAE---RQKRIEEQKEQRRRLE 406

Query: 78  ARQRRELRLFDIKPEQQR 95
            +QRRE  L   +  +QR
Sbjct: 407 EQQRREKELRKQQEREQR 424


>gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo
           sapiens]
          Length = 1360

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 11/78 (14%)

Query: 19  VQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKR-KEKKKKAKGLS 77
           +Q +  +R+EA  R  L++       Q RE++  ++ ++ E   R KR +E+K++ + L 
Sbjct: 357 LQLANKERSEALRRQQLEQ-------QQRENEEHKRQLLAE---RQKRIEEQKEQRRRLE 406

Query: 78  ARQRRELRLFDIKPEQQR 95
            +QRRE  L   +  +QR
Sbjct: 407 EQQRREKELRKQQEREQR 424


>gi|89886453 TBC1 domain family, member 24 [Homo sapiens]
          Length = 553

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 20  QPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHK------RKEKKKKA 73
           QP  +   +  +R F++     +SP+    +L  KA  +  F+R +        EK  K 
Sbjct: 258 QPLESDSVKQDIRTFVRDIAKTVSPE----KLLEKAFAIRLFSRKEIQLLQMANEKALKQ 313

Query: 74  KGLSARQRRE 83
           KG++ +Q+R+
Sbjct: 314 KGITVKQKRQ 323


>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3p [Homo sapiens]
          Length = 476

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 42  MSPQAREDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQR 95
           M  + RE   +R   +LEY    K ++++ + +    R+RREL    ++ E++R
Sbjct: 202 MEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKR 255


>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3pdelta [Homo sapiens]
          Length = 443

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 42  MSPQAREDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQR 95
           M  + RE   +R   +LEY    K ++++ + +    R+RREL    ++ E++R
Sbjct: 169 MEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKR 222


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,458,382
Number of Sequences: 37866
Number of extensions: 308921
Number of successful extensions: 1173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 48
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.