Guide to the Human Genome
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Name: COMMD5 Sequence: fasta or formatted (224aa) NCBI GI: 154800418
Description:

COMM domain containing 5

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt mRNA [224aa] COMM domain containing 5
alt mRNA [224aa] COMM domain containing 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         23           2
 C cysteine            1.3          3           1
 D aspartate           6.2         14           1
 E glutamate           4.9         11           2
 F phenylalanine       3.6          8           1
 G glycine             5.8         13           1
 H histidine           2.2          5           2
 I isoleucine          0.9          2           1
 K lysine              3.1          7           1
 L leucine            16.1         36           2
 M methionine          2.2          5           1
 N asparagine          0.4          1           1
 P proline             5.8         13           2
 Q glutamine           7.6         17           3
 R arginine            7.6         17           2
 S serine              8.5         19           2
 T threonine           3.1          7           1
 V valine              8.0         18           2
 W tryptophan          0.9          2           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   COMM domain containing 5 
COMMD5                1.000   COMM domain containing 5 
COMMD5                1.000   COMM domain containing 5 
LOC441016             0.853   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             0.853   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             0.853   PREDICTED: similar to COMM domain containing 5 [Hom...
COMMD9                0.029   COMM domain containing 9 isoform 2 
COMMD9                0.029   COMM domain containing 9 isoform 1 
COMMD3                0.029   COMM domain containing 3 
COMMD2                0.024   COMM domain containing 2 
COMMD10               0.022   COMM domain containing 10 
POP4                  0.019   processing of precursor 4 
EGFL7                 0.014   EGF-like-domain, multiple 7 
EGFL7                 0.014   EGF-like-domain, multiple 7 
COMMD6                0.007   COMM domain containing 6 isoform a 
COMMD6                0.007   COMM domain containing 6 isoform b 
ART5                  0.007   ADP-ribosyltransferase 5 precursor 
ART5                  0.007   ADP-ribosyltransferase 5 precursor 
COMMD8                0.007   COMM domain containing 8 
UGCGL2                0.007   UDP-glucose ceramide glucosyltransferase-like 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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