UPF3A 2908

Name: UPF3A	Sequence: fasta or formatted (476aa)		NCBI GI: 12711676
Description: UPF3 regulator of nonsense transcripts homolog A isoform hUpf3p		Referenced in: RNases and RNA Stability
Other entries for this name: alt prot [443aa] UPF3 regulator of nonsense transcripts homolog A isoform hUpf3pdelta
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.6 36 2 C cysteine 1.5 7 1 D aspartate 5.0 24 2 E glutamate 14.9 71 3 F phenylalanine 2.5 12 2 G glycine 8.0 38 3 H histidine 1.9 9 2 I isoleucine 2.7 13 1 K lysine 10.1 48 3 L leucine 7.1 34 2 M methionine 0.8 4 1 N asparagine 1.3 6 1 P proline 6.1 29 2 Q glutamine 4.0 19 3 R arginine 12.4 59 4 S serine 5.5 26 3 T threonine 3.6 17 2 V valine 2.5 12 2 W tryptophan 0.2 1 1 Y tyrosine 2.3 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 UPF3 regulator of nonsense transcripts homolog A iso... UPF3A 0.914 UPF3 regulator of nonsense transcripts homolog A iso... UPF3B 0.399 UPF3 regulator of nonsense transcripts homolog B iso... UPF3B 0.390 UPF3 regulator of nonsense transcripts homolog B iso... SFRS12 0.056 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.056 splicing factor, arginine/serine-rich 12 isoform b [... TCHH 0.054 trichohyalin LOC100286959 0.051 PREDICTED: hypothetical protein XP_002343921 RBM25 0.051 RNA binding motif protein 25 SNRNP70 0.050 U1 small nuclear ribonucleoprotein 70 kDa ZC3H13 0.048 zinc finger CCCH-type containing 13 LOC100133599 0.046 PREDICTED: hypothetical protein LOC100288837 0.045 PREDICTED: hypothetical protein XP_002343931, parti... EIF3A 0.044 eukaryotic translation initiation factor 3, subunit 1... BAT2D1 0.044 HBxAg transactivated protein 2 PRPF38B 0.043 PRP38 pre-mRNA processing factor 38 (yeast) domain ... MAP4K4 0.043 mitogen-activated protein kinase kinase kinase kinas... LOC100131202 0.042 PREDICTED: hypothetical protein LOC100134067 0.042 PREDICTED: hypothetical protein LOC645202 0.041 PREDICTED: hypothetical protein LOC645202 CALD1 0.041 caldesmon 1 isoform 1 LOC100131202 0.040 PREDICTED: hypothetical protein MAP4K4 0.040 mitogen-activated protein kinase kinase kinase kinas... LOC283767 0.039 golgi autoantigen, golgin subfamily a-like LOC727832 0.037 golgi autoantigen, golgin subfamily a-like RPGR 0.037 retinitis pigmentosa GTPase regulator isoform C [Hom... LOC100133758 0.037 PREDICTED: hypothetical protein, partial LOC440243 0.037 PREDICTED: Putative golgin subfamily A member 6-lik... INCENP 0.037 inner centromere protein antigens 135/155kDa isofor... INCENP 0.037 inner centromere protein antigens 135/155kDa isofor... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.