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Search of human proteins with 56676337
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56676337 transmembrane protein 28 [Homo sapiens]
(472 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56676337 transmembrane protein 28 [Homo sapiens] 1014 0.0
gi|122937189 family with sequence similarity 155, member A [Homo... 254 2e-67
gi|47132519 Ras association and pleckstrin homology domains 1 is... 49 1e-05
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 48 2e-05
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 48 2e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 44 2e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 44 2e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 44 2e-04
gi|148727370 immediate early response 5-like [Homo sapiens] 44 4e-04
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-04
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 43 5e-04
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 41 0.002
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 41 0.002
gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens] 41 0.002
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 41 0.002
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 41 0.002
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 41 0.002
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 41 0.003
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 41 0.003
gi|60460889 Myb protein P42POP [Homo sapiens] 41 0.003
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 40 0.004
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 40 0.004
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 40 0.004
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 40 0.004
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 40 0.006
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 40 0.006
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 40 0.006
gi|11386183 WAS protein family, member 2 [Homo sapiens] 39 0.008
gi|160707881 formin 2 [Homo sapiens] 39 0.008
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 39 0.008
>gi|56676337 transmembrane protein 28 [Homo sapiens]
Length = 472
Score = 1014 bits (2622), Expect = 0.0
Identities = 472/472 (100%), Positives = 472/472 (100%)
Query: 1 MFRGAWMWPGKDAAALTICCCCCCWAPRPSDKPCADSERAQRWRLSLASLLFFTVLLADH 60
MFRGAWMWPGKDAAALTICCCCCCWAPRPSDKPCADSERAQRWRLSLASLLFFTVLLADH
Sbjct: 1 MFRGAWMWPGKDAAALTICCCCCCWAPRPSDKPCADSERAQRWRLSLASLLFFTVLLADH 60
Query: 61 LWLCAGARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSN 120
LWLCAGARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSN
Sbjct: 61 LWLCAGARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSN 120
Query: 121 LTKAAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFP 180
LTKAAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFP
Sbjct: 121 LTKAAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFP 180
Query: 181 SAKKNLLKGHFRNFTLSFCDTYTVWDLLLGMDRPDSLDCSLDTLMGDLLAVVASPGSGAW 240
SAKKNLLKGHFRNFTLSFCDTYTVWDLLLGMDRPDSLDCSLDTLMGDLLAVVASPGSGAW
Sbjct: 181 SAKKNLLKGHFRNFTLSFCDTYTVWDLLLGMDRPDSLDCSLDTLMGDLLAVVASPGSGAW 240
Query: 241 EACSNCIEAYQRLDRHAQEKYDEFDLVLHKYLQAEEYSIRSCTKGCKAVYKAWLCSEYFS 300
EACSNCIEAYQRLDRHAQEKYDEFDLVLHKYLQAEEYSIRSCTKGCKAVYKAWLCSEYFS
Sbjct: 241 EACSNCIEAYQRLDRHAQEKYDEFDLVLHKYLQAEEYSIRSCTKGCKAVYKAWLCSEYFS 300
Query: 301 VTQQECQRWVPCKQYCLEVQTRCPFILPDNEEMVYGGLPGFICTGLLDTSPKRLETKCCD 360
VTQQECQRWVPCKQYCLEVQTRCPFILPDNEEMVYGGLPGFICTGLLDTSPKRLETKCCD
Sbjct: 301 VTQQECQRWVPCKQYCLEVQTRCPFILPDNEEMVYGGLPGFICTGLLDTSPKRLETKCCD 360
Query: 361 VQWVSCEAKKKKFKESEAPKTHQQQFHHSYFHHYHQQYHHYHPHHDPPGRVSNKPALLPV 420
VQWVSCEAKKKKFKESEAPKTHQQQFHHSYFHHYHQQYHHYHPHHDPPGRVSNKPALLPV
Sbjct: 361 VQWVSCEAKKKKFKESEAPKTHQQQFHHSYFHHYHQQYHHYHPHHDPPGRVSNKPALLPV 420
Query: 421 SGGSRLSPSRIRLCVLVLMLLHTVVSFSSNQGGGGLGLETLPALEEGLTREE 472
SGGSRLSPSRIRLCVLVLMLLHTVVSFSSNQGGGGLGLETLPALEEGLTREE
Sbjct: 421 SGGSRLSPSRIRLCVLVLMLLHTVVSFSSNQGGGGLGLETLPALEEGLTREE 472
>gi|122937189 family with sequence similarity 155, member A [Homo
sapiens]
Length = 458
Score = 254 bits (648), Expect = 2e-67
Identities = 128/280 (45%), Positives = 168/280 (60%), Gaps = 41/280 (14%)
Query: 193 NFTLSFCDTYTVWDLLLGMDRPDSLDCSLDTLMGDLLAVVASPGSGAWEACSNCIEAYQR 252
+F LSFC++YT+W+L G+ P++L+CSLD ++ + G C C+EAYQ
Sbjct: 220 DFYLSFCNSYTLWELFSGLSSPNTLNCSLDVVLKE---------GGEMTTCRQCVEAYQD 270
Query: 253 LDRHAQEKYDEFDLVLHKYLQAEEYSIRSCTKGCKAVYKAWLCSEYFSVTQQECQRWVPC 312
D HAQEKY+EF+ VLHKYLQ+EEYS++SC + CK VYKAWLCS+YF VTQ C++ +PC
Sbjct: 271 YDHHAQEKYEEFESVLHKYLQSEEYSVKSCPEDCKIVYKAWLCSQYFEVTQFNCRKTIPC 330
Query: 313 KQYCLEVQTRCPFILPDNEEMVYGGLPGFICTGLLDTSPKRLETKCCDVQWVSCEAKKKK 372
KQYCLEVQTRCPFILPDN+E++YGGL FICTGL +T E +CCDV+ K
Sbjct: 331 KQYCLEVQTRCPFILPDNDEVIYGGLSSFICTGLYETFLTNDEPECCDVRREEKSNNPSK 390
Query: 373 FKESEAPKTHQQQFHHSYFHHYHQQYHHYHPHHDPPGRVSNKPALLPVSGGSRLSPSRIR 432
++ H+ L VS +RL SR++
Sbjct: 391 GTVEKSGSCHRTS--------------------------------LTVSSATRLCNSRLK 418
Query: 433 LCVLVLMLLHTVVSFSSNQGGGGLGLETLPALEEGLTREE 472
LCVLVL+LLHTV++ S+ Q GL + LEE T EE
Sbjct: 419 LCVLVLILLHTVLTASAAQNTAGLSFGGINTLEENSTNEE 458
Score = 77.0 bits (188), Expect = 3e-14
Identities = 45/74 (60%), Positives = 51/74 (68%), Gaps = 6/74 (8%)
Query: 1 MFRGAWMWPGKDAAALTICCCCCCWAPRPSDKPCADSERAQRWRLSLASLLFFTVLLADH 60
M RGAWM D L I APR ++KP DSERAQ+WRLSLASLLFFTVLL+DH
Sbjct: 1 MTRGAWMCRQYDDG-LKIWLA----APRENEKPFIDSERAQKWRLSLASLLFFTVLLSDH 55
Query: 61 LWLCAGAR-PRARE 73
LW CA A+ RAR+
Sbjct: 56 LWFCAEAKLTRARD 69
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 48.5 bits (114), Expect = 1e-05
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 91 VPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGLDAACTKL 150
VPP V+P PPPPP PP T G + L K AP A S P P P + ++
Sbjct: 703 VPPNGVVPPPPPPP-----PPPTPGSAMAQL-KPAPCAPSLPQFSAPPPPLKIH----QV 752
Query: 151 QSLQRLFEPTTPAPPLRPPDSLSRAP 176
Q + ++ PT P PP P +AP
Sbjct: 753 QHITQVAPPTPPPPPPIPAPLPPQAP 778
Score = 45.4 bits (106), Expect = 1e-04
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 81 PWGAGRERQPVPPRAVLPLPPPPPGEPSAPP---------GTCGP---RYSNLTKAAPAA 128
P+ A + P+PP P PPPPP P PP G+ P +YS +T+ A+
Sbjct: 618 PYTASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNAS 677
Query: 129 GSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFPSA 182
P P + + K Q L P PP PP + A A+ A
Sbjct: 678 QHSGALFKPPTPPVMQSQSVKPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPA 731
Score = 33.9 bits (76), Expect = 0.33
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 90 PVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAG---SRPVCGGVPEPTGLDAA 146
P PP + L PPPPP APP P S + + G S+ G +P
Sbjct: 918 PPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQR 977
Query: 147 CTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFPSAKKNLL 187
+ ++S P P + S PAE S K L
Sbjct: 978 NSSIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETL 1018
Score = 32.7 bits (73), Expect = 0.73
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPV-----C 134
PP + P PP V PPPPP S P G +K + G +P
Sbjct: 919 PPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRN 978
Query: 135 GGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFP 180
+ +G + K S+ L TP P + P P
Sbjct: 979 SSIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETLPPPAAP 1024
Score = 30.4 bits (67), Expect = 3.6
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 19/82 (23%)
Query: 98 PLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLF 157
P PPPPP P+ P P A +P+ +P PT +
Sbjct: 761 PTPPPPPPIPAPLP--------------PQAPPKPLV-TIPAPTSTKTVAPVVTQA---- 801
Query: 158 EPTTPAPPLRPPDSLSRAPAEF 179
P TP PP+ P PA +
Sbjct: 802 APPTPTPPVPPAKKQPAFPASY 823
Score = 29.6 bits (65), Expect = 6.2
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 87 ERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGLDAA 146
++QP P + +P PP P P PP T + S K P P+ L
Sbjct: 814 KKQPAFPASYIPPSPPTPPVP-VPPPTLPKQQSFCAK--------------PPPSPLSPV 858
Query: 147 CTKLQSLQRLFEPTTPAPPLRPPDSLSRAPA 177
+ ++ + F P P PP L PA
Sbjct: 859 PSVVKQIASQF-PPPPTPPAMESQPLKPVPA 888
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 47.8 bits (112), Expect = 2e-05
Identities = 52/204 (25%), Positives = 63/204 (30%), Gaps = 50/204 (24%)
Query: 19 CCCCCCWAPRP--SDKPCADSERAQRWRLSLASLLFFTVLLADHLWLCAGARPRARELSS 76
CC CCCWAPR D+P D R +L + L G+ R LSS
Sbjct: 440 CCACCCWAPRSDLKDRPARDGATVSRMKLQVWGTL-----------TSLGSTLPCRSLSS 488
Query: 77 AMRPPWGAGRERQP-VPPRAVLPLPP-------------PPPGEPSAPPGTCGPRYSNLT 122
+ PW P VP PP P GE P C P +
Sbjct: 489 -HKLPWVTVSHHDPEVPFNHSFIEPPSAGWATDDSFSSDPESGEADEVPAYCVPPQEGMV 547
Query: 123 KAAPAAGSRP--VCGGVPEPTGLDA--ACTKLQSLQRLFEPTTP---------------- 162
A A S G P P A + SL R P+
Sbjct: 548 PVAQAGSSEASLAAGAFPPPEDASTPFAIPRTSSLARAKRPSVSFAEGTKFAPQSRRSSG 607
Query: 163 --APPLRPPDSLSRAPAEFPSAKK 184
+ PLR P LSR P ++
Sbjct: 608 ELSSPLRKPKRLSRGAQSGPEGRE 631
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 47.8 bits (112), Expect = 2e-05
Identities = 52/204 (25%), Positives = 63/204 (30%), Gaps = 50/204 (24%)
Query: 19 CCCCCCWAPRP--SDKPCADSERAQRWRLSLASLLFFTVLLADHLWLCAGARPRARELSS 76
CC CCCWAPR D+P D R +L + L G+ R LSS
Sbjct: 354 CCACCCWAPRSDLKDRPARDGATVSRMKLQVWGTL-----------TSLGSTLPCRSLSS 402
Query: 77 AMRPPWGAGRERQP-VPPRAVLPLPP-------------PPPGEPSAPPGTCGPRYSNLT 122
+ PW P VP PP P GE P C P +
Sbjct: 403 -HKLPWVTVSHHDPEVPFNHSFIEPPSAGWATDDSFSSDPESGEADEVPAYCVPPQEGMV 461
Query: 123 KAAPAAGSRP--VCGGVPEPTGLDA--ACTKLQSLQRLFEPTTP---------------- 162
A A S G P P A + SL R P+
Sbjct: 462 PVAQAGSSEASLAAGAFPPPEDASTPFAIPRTSSLARAKRPSVSFAEGTKFAPQSRRSSG 521
Query: 163 --APPLRPPDSLSRAPAEFPSAKK 184
+ PLR P LSR P ++
Sbjct: 522 ELSSPLRKPKRLSRGAQSGPEGRE 545
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 369 KKKKFKESEAPKTHQQQFHHSYFHHYHQQYHHYHPHH 405
K K E+ A HQQ HH + HH+H HH H HH
Sbjct: 10 KLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHH 46
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 369 KKKKFKESEAPKTHQQQFHHSYFHHYHQQYHHYHPHH 405
K K E+ A HQQ HH + HH+H HH H HH
Sbjct: 10 KLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHH 46
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 369 KKKKFKESEAPKTHQQQFHHSYFHHYHQQYHHYHPHH 405
K K E+ A HQQ HH + HH+H HH H HH
Sbjct: 10 KLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHH 46
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 43.5 bits (101), Expect = 4e-04
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 19/92 (20%)
Query: 76 SAMRPPWGAGRERQPVPPR----AVLPLPPPPPGEP-------------SAPPGTCGPRY 118
+A++PP GA QP+ P A LPLP PPP SAPPG P
Sbjct: 160 AALQPPHGAPHRGQPLEPLQPGPAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAA 219
Query: 119 SNLTKAAPAAGSRP--VCGGVPEPTGLDAACT 148
+ A+PA S P G P P+ C+
Sbjct: 220 AASPPASPAPASSPGFYRGAYPTPSDFGLHCS 251
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 43.1 bits (100), Expect = 5e-04
Identities = 33/83 (39%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 62 WLCAGARPRARELSSAMRPP----WGA---GRERQPVPPRAVLPLPPP---PPGEPSAPP 111
W A R RA E ++A RP W G P P R L LPPP PP P PP
Sbjct: 85 WTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPPPPERPRLPP 144
Query: 112 G--TCGPRYSNLTKAAPAAGSRP 132
GP S APA SRP
Sbjct: 145 AGLAGGPADSAPPSPAPAPRSRP 167
Score = 32.0 bits (71), Expect = 1.2
Identities = 45/143 (31%), Positives = 55/143 (38%), Gaps = 31/143 (21%)
Query: 65 AGARPRARELSSAMRPP--WGAGRERQPVPPRAVLPLP-------PPPPGEPSAPPGTCG 115
A RP + ++S A R P +G G R P PPR P P PPP PG+C
Sbjct: 13 ARGRPHS-QVSLARRAPLMFGPGL-RDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCR 70
Query: 116 PRYSNLT--------KAAP--------AAGSRPVCGGV--PEPTGLDAACTKLQSLQRLF 157
R + AAP AA +RP V G AA + RL
Sbjct: 71 ARCPSPAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLP 130
Query: 158 EPTTPAP--PLRPPDSLSRAPAE 178
P P P P PP L+ PA+
Sbjct: 131 PPPPPPPERPRLPPAGLAGGPAD 153
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
Length = 1258
Score = 43.1 bits (100), Expect = 5e-04
Identities = 42/130 (32%), Positives = 51/130 (39%), Gaps = 19/130 (14%)
Query: 65 AGARPRARELSSAMRPPWGAGRERQPVPPRAVLPLP--------PPPPGEPSAPPGTCGP 116
AGA+ +A +S + P R+ P A PL PPP G P APP P
Sbjct: 896 AGAKSKAPSVSRGSQEPRSGSRK--PAFTEASCPLSRLFEEPEKPPPTGRPPAPP-RAAP 952
Query: 117 RYSNLTKAAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAP-PLRPPDSLSRA 175
R LT G+ PEP G+ A K + P L PP+ S A
Sbjct: 953 REEPLTPRLKPEGA-------PEPEGVAAPPPKNSFNNPAYYVLEGVPHQLLPPEPPSPA 1005
Query: 176 PAEFPSAKKN 185
A PSA KN
Sbjct: 1006 RAPVPSATKN 1015
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 41.2 bits (95), Expect = 0.002
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 382 HQQQFHHSYFHHYHQQYHHYHPHHDPPGRVSNKP 415
H HH +HH+H +HHYH H P R +P
Sbjct: 510 HTASVHHLVYHHHHHHHHHYHFSHGSPRRPGPEP 543
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 41.2 bits (95), Expect = 0.002
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 382 HQQQFHHSYFHHYHQQYHHYHPHHDPPGRVSNKP 415
H HH +HH+H +HHYH H P R +P
Sbjct: 510 HTASVHHLVYHHHHHHHHHYHFSHGSPRRPGPEP 543
>gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens]
Length = 284
Score = 41.2 bits (95), Expect = 0.002
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 65 AGARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKA 124
+GA P SA PP+GAG+ PP+A PP P G P+ PG P YS LT
Sbjct: 30 SGAGPGGGLTPSA--PPYGAGKH---APPQA---FPPFPEGHPAVLPGEDPPPYSPLT-- 79
Query: 125 APAAGSRPV 133
+P +GS P+
Sbjct: 80 SPDSGSAPM 88
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
sapiens]
Length = 1758
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 90 PVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNL---TKAAPAAGSRPVCGGVPEPTGLDA- 145
PVPP PL PPPP PPG P++S + PA S P G P P L
Sbjct: 558 PVPPP---PLYPPPPHTLPLPPGVPPPQFSPQFPPGQPPPAGYSVPPPGFPPAPANLSTP 614
Query: 146 -ACTKLQSLQRLFEPTTPAPPL 166
+ +Q+ PTT APPL
Sbjct: 615 WVSSGVQTAHSNTIPTTQAPPL 636
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 90 PVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNL---TKAAPAAGSRPVCGGVPEPTGLDA- 145
PVPP PL PPPP PPG P++S + PA S P G P P L
Sbjct: 558 PVPPP---PLYPPPPHTLPLPPGVPPPQFSPQFPPGQPPPAGYSVPPPGFPPAPANLSTP 614
Query: 146 -ACTKLQSLQRLFEPTTPAPPL 166
+ +Q+ PTT APPL
Sbjct: 615 WVSSGVQTAHSNTIPTTQAPPL 636
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 41.2 bits (95), Expect = 0.002
Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 66 GARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAA 125
G+R R E A PP QP PP P P PPPGEP+ P PRY A+
Sbjct: 9 GSRCRGAESGDAEPPP-------QPPPP----PPPTPPPGEPAPVP--AAPRYLPPLPAS 55
Query: 126 PAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPP 165
P R G EP G + + L P P P
Sbjct: 56 PETPER--AAGPSEPLG--EVAPRCRGADELPPPPLPLQP 91
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 19 CCCCCCWAPRP--SDKPCADSERAQRWRLSLASLLFFTVLLADHLWLCAGARPRARELSS 76
CC CCCWAPR D+P D R +L + L G+ R LSS
Sbjct: 440 CCACCCWAPRSDLKDRPARDGATVSRMKLQVWGTL-----------TSLGSTLPCRSLSS 488
Query: 77 AMRPPWGAGRERQPVP 92
+ PW +P+P
Sbjct: 489 -HKLPWVTASSSRPLP 503
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 40.8 bits (94), Expect = 0.003
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 79 RPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNL-TKAAPAAGSRPVCGGV 137
+PP G E P P P PPPPP +P PP P +L PAA P G
Sbjct: 1397 QPPSGGPPEAPPAQPPPPPPPPPPPPQQPLPPPPNLEPAPPSLGDPGEPAAHPGPSTG-- 1454
Query: 138 PEPTGLDAACTKLQSLQR 155
P + A + SL+R
Sbjct: 1455 PSTKNENVATLSVSSLER 1472
Score = 31.6 bits (70), Expect = 1.6
Identities = 19/59 (32%), Positives = 23/59 (38%)
Query: 65 AGARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTK 123
+G P A PP +QP+PP L PP G+P P GP TK
Sbjct: 1400 SGGPPEAPPAQPPPPPPPPPPPPQQPLPPPPNLEPAPPSLGDPGEPAAHPGPSTGPSTK 1458
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 40.8 bits (94), Expect = 0.003
Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 36/127 (28%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRY-----------------SNLT 122
P GAG E PP P PP C RY S
Sbjct: 127 PGAGAGAEE-----------PPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAG 175
Query: 123 KAAPAAGSRPVC----GGVPEPTGLD----AACTKLQSLQRLFEPTTPAPPLRPPDSLSR 174
++P +RP C GG P P + +A +Q + P PAPPL PP L++
Sbjct: 176 SSSPEPWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQ 235
Query: 175 APAEFPS 181
PS
Sbjct: 236 VAPSPPS 242
Score = 32.7 bits (73), Expect = 0.73
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 77 AMRPPWGAGRERQPVPPRAVLPLPPPPPGEPSAPP--GTCGPRYSNLTKAAPAAGS-RPV 133
A+ PP A P P V P PP PP P PP P L A + R +
Sbjct: 217 ALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQETANAIREL 276
Query: 134 CGGVPEPTGLDAACTKLQSLQRLFEPTTPA----PPLRPP 169
G + + GL L +L L P TP PPL PP
Sbjct: 277 AGTLRQ--GLAKLSEALSALLPLL-PGTPVDSLPPPLPPP 313
Score = 31.6 bits (70), Expect = 1.6
Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 9/124 (7%)
Query: 63 LCAGARPRARELSSAMRP--PWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSN 120
L R +LS A+ P G +PP P PPPPP P PP P+
Sbjct: 276 LAGTLRQGLAKLSEALSALLPLLPGTPVDSLPPPLPPPPPPPPPPRPVLPPP--APKV-E 332
Query: 121 LTKAAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFP 180
+T + + V G V G+ A + R P P PP P R FP
Sbjct: 333 ITPEPVSVVAAVVDGAVVAARGVIIAPRSEEGAPR--PPPAPLPPHDSPPHKRR--KGFP 388
Query: 181 SAKK 184
+ K+
Sbjct: 389 TRKR 392
Score = 31.2 bits (69), Expect = 2.1
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 45/95 (47%)
Query: 86 RERQPVPPRAVLP-------LPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVP 138
+ER+ PP A+ P L PPPP P PP L + AP+
Sbjct: 198 KERESPPPSALQPVQLPRLALSPPPPAPPLPPP-------PPLAQVAPS----------- 239
Query: 139 EPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLS 173
P +P PP RPP +LS
Sbjct: 240 --------------------PPSPPPPPRPPPTLS 254
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 40.4 bits (93), Expect = 0.004
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPE 139
PP G+ + P P P PPPPG+P PP G + S +++ P P G +
Sbjct: 256 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSK-SRSSRSPPGKPQGPPPQGGNQ 314
Query: 140 PTGLDAACTKLQS--LQRLFEPTTPAPPLRP 168
P G K Q Q +P P PP +P
Sbjct: 315 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 345
Score = 40.0 bits (92), Expect = 0.005
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPE 139
PP G+ + P P P PPPPG+P PP G S +++ P P G +
Sbjct: 132 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQ-GDNKSRSSRSPPGKPQGPPPQGGNQ 190
Query: 140 PTGLDAACTKLQS--LQRLFEPTTPAPPLRP 168
P G K Q Q +P P PP +P
Sbjct: 191 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 221
Score = 39.7 bits (91), Expect = 0.006
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPE 139
PP G+ + P P P PPPPG+P PP G S ++ P P G +
Sbjct: 194 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQ-GDNKSQSARSPPGKPQGPPPQGGNQ 252
Query: 140 PTGLDAACTKLQS--LQRLFEPTTPAPPLRP 168
P G K Q Q +P P PP +P
Sbjct: 253 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 283
Score = 36.6 bits (83), Expect = 0.051
Identities = 25/89 (28%), Positives = 33/89 (37%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPE 139
PP G+ + P P P PPPPG+P PP S + G P G P+
Sbjct: 71 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ 130
Query: 140 PTGLDAACTKLQSLQRLFEPTTPAPPLRP 168
+ Q +P P PP +P
Sbjct: 131 GPPPPPGKPQGPPPQGGNKPQGPPPPGKP 159
Score = 35.4 bits (80), Expect = 0.11
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPE 139
PP G+ + P P P PPPPG+P PP P+ + +++A + +P G P+
Sbjct: 318 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP----PQGGSKSRSARSPPGKP--QGPPQ 371
Query: 140 PTG 142
G
Sbjct: 372 QEG 374
Score = 31.6 bits (70), Expect = 1.6
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 20/129 (15%)
Query: 55 VLLADHLWLCAGARPRARELSSAMRPPWGAGRERQPVPPRAVLPL-PPPPPGEPSAPPGT 113
+LL+ L + A+ ++S P AG + P P PP PPG+P PP
Sbjct: 4 ILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPP-- 61
Query: 114 CGPRYSNLTKAAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPP--DS 171
P G++P G P P G Q + P P P PP
Sbjct: 62 ------------PQGGNQP--QGPPPPPGKPQG-PPPQGGNKPQGPPPPGKPQGPPPQGD 106
Query: 172 LSRAPAEFP 180
SR+P P
Sbjct: 107 KSRSPRSPP 115
Score = 30.4 bits (67), Expect = 3.6
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPP---GEPSAPP 111
PP G +QP P A P PP P G PS PP
Sbjct: 381 PPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 415
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 40.4 bits (93), Expect = 0.004
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 77 AMRPPWGAGRERQPVPPRAVLPLPP--PPPGEPSAPPGTCGPRYSNLTKAAP-----AAG 129
A PP G + P PP A P P PPP P P T P T A P AA
Sbjct: 464 ASHPPTGL-HQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAAS 522
Query: 130 SRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPP 169
+ GG P L K ++L EP +P PP R P
Sbjct: 523 GGSIAGGSSCP--LPTVQIKEEALDDAEEPESPPPPPRSP 560
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 92 PPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGLDAACTKLQ 151
PP ++P P P P+ PPG + P S P PTGL +
Sbjct: 432 PPLQLMPQSQPLPSSPAQPPG-----LTQSQNLPPPPASHP-------PTGLHQVAPQPP 479
Query: 152 SLQRLFEPTTPAPPLRPP--DSLSRAPA 177
Q F P P PP+ PP S S PA
Sbjct: 480 FAQHPFVPGGP-PPITPPTCPSTSTPPA 506
Score = 34.3 bits (77), Expect = 0.25
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 66 GARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEP--SAPPGTCGPRYSNLTK 123
G P A ++++ P + PPR PLPP P P PP T P+
Sbjct: 332 GTSPAAAYPHTSLQLPASQSALQSQQPPREQ-PLPPAPLAMPHIKPPPTTPIPQLP---- 386
Query: 124 AAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFP 180
AP A P P P ++A +L+ L +T PP P L P P
Sbjct: 387 -APQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQP 442
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 40.4 bits (93), Expect = 0.004
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 77 AMRPPWGAGRERQPVPPRAVLPLPP--PPPGEPSAPPGTCGPRYSNLTKAAP-----AAG 129
A PP G + P PP A P P PPP P P T P T A P AA
Sbjct: 1018 ASHPPTGL-HQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAAS 1076
Query: 130 SRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPP 169
+ GG P L K ++L EP +P PP R P
Sbjct: 1077 GGSIAGGSSCP--LPTVQIKEEALDDAEEPESPPPPPRSP 1114
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 92 PPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGLDAACTKLQ 151
PP ++P P P P+ PPG + P S P PTGL +
Sbjct: 986 PPLQLMPQSQPLPSSPAQPPG-----LTQSQNLPPPPASHP-------PTGLHQVAPQPP 1033
Query: 152 SLQRLFEPTTPAPPLRPP--DSLSRAPA 177
Q F P P PP+ PP S S PA
Sbjct: 1034 FAQHPFVPGGP-PPITPPTCPSTSTPPA 1060
Score = 34.3 bits (77), Expect = 0.25
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 66 GARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEP--SAPPGTCGPRYSNLTK 123
G P A ++++ P + PPR PLPP P P PP T P+
Sbjct: 886 GTSPAAAYPHTSLQLPASQSALQSQQPPREQ-PLPPAPLAMPHIKPPPTTPIPQLP---- 940
Query: 124 AAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFP 180
AP A P P P ++A +L+ L +T PP P L P P
Sbjct: 941 -APQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQP 996
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 40.4 bits (93), Expect = 0.004
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 77 AMRPPWGAGRERQPVPPRAVLPLPP--PPPGEPSAPPGTCGPRYSNLTKAAP-----AAG 129
A PP G + P PP A P P PPP P P T P T A P AA
Sbjct: 1018 ASHPPTGL-HQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAAS 1076
Query: 130 SRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPP 169
+ GG P L K ++L EP +P PP R P
Sbjct: 1077 GGSIAGGSSCP--LPTVQIKEEALDDAEEPESPPPPPRSP 1114
Score = 35.4 bits (80), Expect = 0.11
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 92 PPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGLDAACTKLQ 151
PP ++P P P P+ PPG + P S P PTGL +
Sbjct: 986 PPLQLMPQSQPLPSSPAQPPG-----LTQSQNLPPPPASHP-------PTGLHQVAPQPP 1033
Query: 152 SLQRLFEPTTPAPPLRPP--DSLSRAPA 177
Q F P P PP+ PP S S PA
Sbjct: 1034 FAQHPFVPGGP-PPITPPTCPSTSTPPA 1060
Score = 34.3 bits (77), Expect = 0.25
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 66 GARPRARELSSAMRPPWGAGRERQPVPPRAVLPLPPPPPGEP--SAPPGTCGPRYSNLTK 123
G P A ++++ P + PPR PLPP P P PP T P+
Sbjct: 886 GTSPAAAYPHTSLQLPASQSALQSQQPPREQ-PLPPAPLAMPHIKPPPTTPIPQLP---- 940
Query: 124 AAPAAGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFP 180
AP A P P P ++A +L+ L +T PP P L P P
Sbjct: 941 -APQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQP 996
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 39.7 bits (91), Expect = 0.006
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 85 GRERQPVPPRAVLPLPPPPP-GEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGL 143
G+ P PP ++P PPPPP G+P PP P + + P P P+
Sbjct: 466 GKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPP---------PPPSSS 516
Query: 144 DAACTKLQSLQRLFEPTTPA-----PPLRPPDSLSRAPAEFPSAKKN 185
A+ T L Q TT A PP + + + A P + N
Sbjct: 517 MASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGN 563
Score = 31.6 bits (70), Expect = 1.6
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 90 PVPPRAVLPLPP-PPPGEPSAPPGTCG 115
P+PP PLPP PP P PPG+ G
Sbjct: 568 PLPPGVQPPLPPGAPPPPPPPPPGSAG 594
Score = 31.2 bits (69), Expect = 2.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 90 PVPPRAVLPLPPPPPGEPS---APPGTCGPRYSN 120
P+PP A P PPPPPG P G GP + +
Sbjct: 576 PLPPGAPPPPPPPPPGSAGMMIPPRGGDGPSHES 609
Score = 30.4 bits (67), Expect = 3.6
Identities = 30/121 (24%), Positives = 36/121 (29%), Gaps = 29/121 (23%)
Query: 78 MRPPWGAGRERQPVPPRAVLP-----------------LPPPPPGEPSAPPGTCGPRYSN 120
M PP G P PP + P PPPPP S T P N
Sbjct: 469 MMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQN 528
Query: 121 LTKAAPAAGSRPV------------CGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRP 168
T +AG+ + G P+ G +Q P P PP P
Sbjct: 529 TTTTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPP 588
Query: 169 P 169
P
Sbjct: 589 P 589
Score = 29.6 bits (65), Expect = 6.2
Identities = 31/104 (29%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 92 PPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGV-----------PEP 140
PP + PPPP + PPG GP GS PV GV P P
Sbjct: 420 PPPPWMQPPPPPMNQGPHPPGHHGP-----PPMDQYLGSTPVGSGVYRLHQGKGMMPPPP 474
Query: 141 TGLDAACTKLQSLQRLFEPTTPAPPLR---------PPDSLSRA 175
G+ S Q P+ P PP + PP S S A
Sbjct: 475 MGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMA 518
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 39.7 bits (91), Expect = 0.006
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 15/107 (14%)
Query: 85 GRERQPVPPRAVLPLPPPPP-GEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGL 143
G+ P PP ++P PPPPP G+P PP P + + P P P+
Sbjct: 466 GKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPP---------PPPSSS 516
Query: 144 DAACTKLQSLQRLFEPTTPA-----PPLRPPDSLSRAPAEFPSAKKN 185
A+ T L Q TT A PP + + + A P + N
Sbjct: 517 MASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGN 563
Score = 33.5 bits (75), Expect = 0.43
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 90 PVPPRAVLPLPP-PPPGEPSAPPGTCGPRYS 119
P+PP PLPP PP P PPG+ G Y+
Sbjct: 568 PLPPGVQPPLPPGAPPPPPPPPPGSAGMMYA 598
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 90 PVPPRAVLPLPPPPPGE-------PSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPEP 140
P+PP A P PPPPPG P PP P + +T P G P P
Sbjct: 576 PLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPMDPS-NFVTMMGMGVAGMPPFGMPPAP 632
Score = 30.4 bits (67), Expect = 3.6
Identities = 30/121 (24%), Positives = 36/121 (29%), Gaps = 29/121 (23%)
Query: 78 MRPPWGAGRERQPVPPRAVLP-----------------LPPPPPGEPSAPPGTCGPRYSN 120
M PP G P PP + P PPPPP S T P N
Sbjct: 469 MMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQN 528
Query: 121 LTKAAPAAGSRPV------------CGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRP 168
T +AG+ + G P+ G +Q P P PP P
Sbjct: 529 TTTTTTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPP 588
Query: 169 P 169
P
Sbjct: 589 P 589
Score = 29.6 bits (65), Expect = 6.2
Identities = 31/104 (29%), Positives = 36/104 (34%), Gaps = 25/104 (24%)
Query: 92 PPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGV-----------PEP 140
PP + PPPP + PPG GP GS PV GV P P
Sbjct: 420 PPPPWMQPPPPPMNQGPHPPGHHGP-----PPMDQYLGSTPVGSGVYRLHQGKGMMPPPP 474
Query: 141 TGLDAACTKLQSLQRLFEPTTPAPPLR---------PPDSLSRA 175
G+ S Q P+ P PP + PP S S A
Sbjct: 475 MGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMA 518
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 39.7 bits (91), Expect = 0.006
Identities = 33/103 (32%), Positives = 37/103 (35%), Gaps = 21/103 (20%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPP----PPGEPSA--PPGTCGPRYSNLTKAAPAAGSRPV 133
PPW P PP A +P PP PPG P A PP GP + + P A P
Sbjct: 295 PPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPP---GPPMARVPPGPPMAPLPPG 351
Query: 134 CGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAP 176
P P G A P P PP+ P S P
Sbjct: 352 PPMAPLPPGPPMA------------PLPPGPPMAPLPPRSHVP 382
Score = 35.0 bits (79), Expect = 0.15
Identities = 36/118 (30%), Positives = 43/118 (36%), Gaps = 17/118 (14%)
Query: 69 PRARELSSAMRPPWGAGRERQPVPPRAVL-PLPPPPPGEPSAPPGTCGPRYSNLTKAAPA 127
PR L PP P PP A + P+ P PPG AP GPR + + P
Sbjct: 242 PRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPP-GPRMAPVPPWPPM 300
Query: 128 AGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLR---PPDSLSRAPAEFPSA 182
A P P PTG A P P PP+ P ++R P P A
Sbjct: 301 APVPPWPPMAPVPTGPPMA------------PVPPGPPMARVPPGPPMARVPPGPPMA 346
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 39.3 bits (90), Expect = 0.008
Identities = 33/102 (32%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 69 PRARELSSAMRP-PWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPA 127
P A L S P P A P PP ++ +PPPPP PGT P + P+
Sbjct: 301 PPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPP------PSPPS 354
Query: 128 AGSRPVCGGVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPP 169
P P P AA L +PT APP PP
Sbjct: 355 FPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPP 396
Score = 31.2 bits (69), Expect = 2.1
Identities = 35/127 (27%), Positives = 41/127 (32%), Gaps = 23/127 (18%)
Query: 80 PPWGAGRERQPVPPRA--------VLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSR 131
PP G G P PP PPPPP + P P S T AP
Sbjct: 337 PPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPP 396
Query: 132 PVCGGVPEP--TGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFPSAKKNLLKG 189
P G P P TG D +P P PPL + A+ +LL
Sbjct: 397 PPPPGPPPPPFTGADG------------QPAIP-PPLSDTTKPKSSLPAVSDARSDLLSA 443
Query: 190 HFRNFTL 196
+ F L
Sbjct: 444 IRQGFQL 450
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 39.3 bits (90), Expect = 0.008
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 83 GAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAG---SRPVCG-GVP 138
GAG P PR +P PPP PG PP P G P+ G G+P
Sbjct: 1137 GAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIP 1196
Query: 139 EPTGL-DAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFPSAKKNLL 187
P L A L + P PAPPL PP + P P + LL
Sbjct: 1197 PPPPLPGAGIPPPPPLPGMGIPPAPAPPLPPPGTGIPPPPLLPVSGPPLL 1246
Score = 31.6 bits (70), Expect = 1.6
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 83 GAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRP----VCGGVP 138
GAG P P A +P PPP PG PP L P AG P G+P
Sbjct: 928 GAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIP 987
Query: 139 EPTGLDAA 146
P L A
Sbjct: 988 PPPPLPGA 995
Score = 30.0 bits (66), Expect = 4.7
Identities = 28/89 (31%), Positives = 33/89 (37%), Gaps = 25/89 (28%)
Query: 89 QPVPPRAVLPLPPPPPGEPSA----PPGTCGPRYSNLTKAAPAAGSRPVCGGVPEPTGLD 144
QP P + LPPPPP P A PP G + + P G+ G+P P L
Sbjct: 898 QPPPLQGTEMLPPPPPPLPGAGIPPPPPLPG---AGILPLPPLPGA-----GIPPPPPLP 949
Query: 145 AACTKLQSLQRLFEPTTPAP----PLRPP 169
A P P P PL PP
Sbjct: 950 GAA---------IPPPPPLPGAGIPLPPP 969
Score = 30.0 bits (66), Expect = 4.7
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 83 GAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRP----VCGGVP 138
GA P P A +PLPPP PG PP P AG P G+P
Sbjct: 950 GAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIP 1009
Query: 139 EPTGLDAA 146
P L A
Sbjct: 1010 PPPPLPGA 1017
Score = 29.6 bits (65), Expect = 6.2
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 83 GAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRP----VCGGVP 138
GAG P P A +P PPP PG PP P AG P G+P
Sbjct: 994 GAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIP 1053
Query: 139 EPTGLDAA 146
P L A
Sbjct: 1054 PPPPLPGA 1061
Score = 29.3 bits (64), Expect = 8.1
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 83 GAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAG---SRPVCG-GVP 138
GAG P P A +P PPP PG PP P AG P+ G G+P
Sbjct: 1049 GAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIP 1108
Query: 139 EPTGLDAA 146
P L A
Sbjct: 1109 PPPPLPGA 1116
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 39.3 bits (90), Expect = 0.008
Identities = 27/104 (25%), Positives = 41/104 (39%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPE 139
PP G+ + P P P PPPPG+P PP S+ + G P G P+
Sbjct: 172 PPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQ 231
Query: 140 PTGLDAACTKLQSLQRLFEPTTPAPPLRPPDSLSRAPAEFPSAK 183
+ Q +P P PP +P ++ ++ SA+
Sbjct: 232 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSAR 275
Score = 38.1 bits (87), Expect = 0.017
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCG---- 135
PP G+ + P P P PPPPG+P PP S + G P G
Sbjct: 50 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ 109
Query: 136 GVPEPTGLDAACTKLQSLQRLFEPTTPAPPLRPP--DSLSRAPAEFP 180
G P P G Q R P P P PP SR+P P
Sbjct: 110 GPPPPPGKPQG-PPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPP 155
Score = 36.6 bits (83), Expect = 0.051
Identities = 25/89 (28%), Positives = 33/89 (37%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPPGEPSAPPGTCGPRYSNLTKAAPAAGSRPVCGGVPE 139
PP G+ + P P P PPPPG+P PP S + G P G P+
Sbjct: 111 PPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ 170
Query: 140 PTGLDAACTKLQSLQRLFEPTTPAPPLRP 168
+ Q +P P PP +P
Sbjct: 171 GPPPPPGKPQGPPPQGGKKPQGPPPPGKP 199
Score = 36.2 bits (82), Expect = 0.066
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 55 VLLADHLWLCAGARPRARELSSAMRPPWGAGRERQPVPPRAVLPL-PPPPPGEPSAPPGT 113
+LL+ L + A+ ++S P AG + P P P PPPPPG+P PP
Sbjct: 4 ILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPP-- 61
Query: 114 CGPRYSNLTKAAPAAG 129
P+ N + P G
Sbjct: 62 --PQGGNKPQGPPPPG 75
Score = 30.4 bits (67), Expect = 3.6
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPPPP---GEPSAPP 111
PP G +QP P A P PP P G PS PP
Sbjct: 296 PPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 330
Score = 29.3 bits (64), Expect = 8.1
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 17/65 (26%)
Query: 80 PPWGAGRERQPVPPRAVLPLPPP------------PPGEPSAPPGTCGPRYSNLTKAAPA 127
PP G + + P PP P PP PPG+P PP G +N P
Sbjct: 244 PPQGGNKPQGPPPPGK--PQGPPAQGGSKSQSARSPPGKPQGPPQQEG---NNPQGPPPP 298
Query: 128 AGSRP 132
AG P
Sbjct: 299 AGGNP 303
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,404,049
Number of Sequences: 37866
Number of extensions: 1468155
Number of successful extensions: 19578
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 739
Number of HSP's that attempted gapping in prelim test: 11606
Number of HSP's gapped (non-prelim): 5377
length of query: 472
length of database: 18,247,518
effective HSP length: 106
effective length of query: 366
effective length of database: 14,233,722
effective search space: 5209542252
effective search space used: 5209542252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.