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Search of human proteins with 134284357
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134284357 nuclear prelamin A recognition factor isoform d
[Homo sapiens]
(408 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134284357 nuclear prelamin A recognition factor isoform d [Ho... 830 0.0
gi|6912524 nuclear prelamin A recognition factor isoform a [Homo... 807 0.0
gi|14165461 nuclear prelamin A recognition factor isoform b [Hom... 785 0.0
gi|84452151 nuclear prelamin A recognition factor isoform c [Hom... 754 0.0
gi|11968051 nuclear prelamin A recognition factor-like [Homo sap... 393 e-109
gi|226371669 discs large homolog 7 isoform b [Homo sapiens] 30 3.0
gi|226371667 discs large homolog 7 isoform a [Homo sapiens] 30 3.0
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 30 3.9
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 30 3.9
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 30 3.9
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 30 3.9
gi|30794372 polybromo 1 isoform 1 [Homo sapiens] 30 3.9
gi|93102371 polybromo 1 isoform 2 [Homo sapiens] 30 3.9
gi|41281917 polybromo 1 isoform 4 [Homo sapiens] 30 3.9
gi|156547039 zinc finger protein 223 [Homo sapiens] 30 3.9
gi|28558973 mediator complex subunit 14 [Homo sapiens] 29 6.7
gi|239753557 PREDICTED: zinc finger protein 852 [Homo sapiens] 29 8.8
gi|239753089 PREDICTED: hypothetical protein [Homo sapiens] 29 8.8
gi|169165837 PREDICTED: zinc finger protein 852 [Homo sapiens] 29 8.8
gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo ... 29 8.8
gi|239742001 PREDICTED: zinc finger protein 852 [Homo sapiens] 29 8.8
gi|239741520 PREDICTED: hypothetical protein XP_002342220 [Homo ... 29 8.8
gi|4502713 CDC45-like [Homo sapiens] 29 8.8
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 29 8.8
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap... 29 8.8
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap... 29 8.8
gi|157743245 WD repeat domain 43 [Homo sapiens] 29 8.8
gi|148613880 hypothetical protein LOC145773 [Homo sapiens] 29 8.8
>gi|134284357 nuclear prelamin A recognition factor isoform d [Homo
sapiens]
Length = 408
Score = 830 bits (2143), Expect = 0.0
Identities = 408/408 (100%), Positives = 408/408 (100%)
Query: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPYFAA 60
MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPYFAA
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPYFAA 60
Query: 61 KFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPML 120
KFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPML
Sbjct: 61 KFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPML 120
Query: 121 TSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 180
TSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC
Sbjct: 121 TSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 180
Query: 181 YDKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVT 240
YDKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVT
Sbjct: 181 YDKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVT 240
Query: 241 RHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYG 300
RHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYG
Sbjct: 241 RHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYG 300
Query: 301 FRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIP 360
FRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIP
Sbjct: 301 FRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIP 360
Query: 361 VRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 408
VRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW
Sbjct: 361 VRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 408
>gi|6912524 nuclear prelamin A recognition factor isoform a [Homo
sapiens]
Length = 456
Score = 807 bits (2084), Expect = 0.0
Identities = 408/456 (89%), Positives = 408/456 (89%), Gaps = 48/456 (10%)
Query: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEK----------------------- 37
MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEK
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM 60
Query: 38 -------------------------CDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 72
CDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR
Sbjct: 61 TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 120
Query: 73 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 132
LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE
Sbjct: 121 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 180
Query: 133 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 192
RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL
Sbjct: 181 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 240
Query: 193 PPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLA 252
PPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLA
Sbjct: 241 PPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLA 300
Query: 253 HIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLK 312
HIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLK
Sbjct: 301 HIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLK 360
Query: 313 KGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQE 372
KGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQE
Sbjct: 361 KGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQE 420
Query: 373 LYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 408
LYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW
Sbjct: 421 LYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW 456
>gi|14165461 nuclear prelamin A recognition factor isoform b [Homo
sapiens]
Length = 502
Score = 785 bits (2027), Expect = 0.0
Identities = 408/502 (81%), Positives = 408/502 (81%), Gaps = 94/502 (18%)
Query: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEK----------------------- 37
MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEK
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM 60
Query: 38 -------------------------CDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 72
CDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR
Sbjct: 61 TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 120
Query: 73 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 132
LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE
Sbjct: 121 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 180
Query: 133 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 192
RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL
Sbjct: 181 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 240
Query: 193 PPALHGSRGADCVLTS-------------------------------------------- 208
PPALHGSRGADCVLTS
Sbjct: 241 PPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLG 300
Query: 209 --GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 266
GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED
Sbjct: 301 GGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 360
Query: 267 VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC 326
VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC
Sbjct: 361 VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC 420
Query: 327 AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA 386
AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA
Sbjct: 421 AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA 480
Query: 387 REVLHTTYQSQERGTHSLDIKW 408
REVLHTTYQSQERGTHSLDIKW
Sbjct: 481 REVLHTTYQSQERGTHSLDIKW 502
>gi|84452151 nuclear prelamin A recognition factor isoform c [Homo
sapiens]
Length = 397
Score = 754 bits (1946), Expect = 0.0
Identities = 372/373 (99%), Positives = 373/373 (100%)
Query: 36 EKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFS 95
+KCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFS
Sbjct: 25 KKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFS 84
Query: 96 ILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGS 155
ILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGS
Sbjct: 85 ILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGS 144
Query: 156 LVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIM 215
LVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIM
Sbjct: 145 LVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIM 204
Query: 216 EQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRAL 275
EQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRAL
Sbjct: 205 EQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRAL 264
Query: 276 RNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRG 335
RNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRG
Sbjct: 265 RNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRG 324
Query: 336 QAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQ 395
QAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQ
Sbjct: 325 QAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQ 384
Query: 396 SQERGTHSLDIKW 408
SQERGTHSLDIKW
Sbjct: 385 SQERGTHSLDIKW 397
>gi|11968051 nuclear prelamin A recognition factor-like [Homo
sapiens]
Length = 476
Score = 393 bits (1009), Expect = e-109
Identities = 192/371 (51%), Positives = 261/371 (70%), Gaps = 4/371 (1%)
Query: 41 SKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQ 100
S+ +++VVSV PQS AA+F L+ TD +R+L F K +GVH+VFDT + FS+LESQ
Sbjct: 107 SQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQ 166
Query: 101 KEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDY 160
+EFVRR+R ++ + LP+L SACPGW+ YAE+ G I H+ TA+SPQQVMGSLVKD+
Sbjct: 167 REFVRRFRGQADCRQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVKDF 226
Query: 161 FARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDL 220
FA+QQ+L+P+KI+HV V PCYDKKLEA + H +R DCVLT+GE+ +++E+ +
Sbjct: 227 FAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFNQEHQTRDVDCVLTTGEVFRLLEEEGV 286
Query: 221 SVRD---AAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRN 277
S+ D A +D+L ++ T H G S G+L H+FRHAA+ELF V EVTY+ LRN
Sbjct: 287 SLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVAEVTYKPLRN 346
Query: 278 KDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQA 337
KDFQEVTLEK G+V+L FA AYGFRNIQN++ +LK+G+ P+H+VEV+AC GCLNG GQ
Sbjct: 347 KDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQL 406
Query: 338 QTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTYQSQ 397
Q PD + LL+ +E +Y + PE + VQELY WL+G +S A +LHT Y +
Sbjct: 407 QAPD-RPSRELLQHVERLYGMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAV 465
Query: 398 ERGTHSLDIKW 408
E+ + L I+W
Sbjct: 466 EKASTGLGIRW 476
>gi|226371669 discs large homolog 7 isoform b [Homo sapiens]
Length = 842
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 9 KECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTD 68
K+ ++TK D++ +V A P P Q EK + K K +V V P SL + S T
Sbjct: 158 KDQMEQTKIDNESDVRAIRPGPRQ-TSEKKVSDKEKKVVQPVMPTSL-----RMTRSATQ 211
Query: 69 ASRRL 73
A++++
Sbjct: 212 AAKQV 216
>gi|226371667 discs large homolog 7 isoform a [Homo sapiens]
Length = 846
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 9 KECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTD 68
K+ ++TK D++ +V A P P Q EK + K K +V V P SL + S T
Sbjct: 158 KDQMEQTKIDNESDVRAIRPGPRQ-TSEKKVSDKEKKVVQPVMPTSL-----RMTRSATQ 211
Query: 69 ASRRL 73
A++++
Sbjct: 212 AAKQV 216
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 30.0 bits (66), Expect = 3.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 134 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 180
+ GRP A + +++ G L+ D+FA+++ +PEK + APC
Sbjct: 235 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 284
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 30.0 bits (66), Expect = 3.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 134 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 180
+ GRP A + +++ G L+ D+FA+++ +PEK + APC
Sbjct: 235 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 284
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 30.0 bits (66), Expect = 3.9
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 134 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 180
+ GRP A + +++ G L+ D+FA+++ +PEK + APC
Sbjct: 246 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 295
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 30.0 bits (66), Expect = 3.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 360 PVRRPESSAHVQE-LYQEWLEGINSPKAREVLHTTYQSQERGTHSLD 405
P P S H +E Y+ L+G + + R H+ Y ERGT D
Sbjct: 114 PAYGPPPSLHAREGRYERRLDGASDNRERAYEHSAYGHHERGTGGFD 160
>gi|30794372 polybromo 1 isoform 1 [Homo sapiens]
Length = 1602
Score = 30.0 bits (66), Expect = 3.9
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 256 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 298
R+ +LF E + EV RA R N+ E+ L KNGE++L A +
Sbjct: 801 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 860
Query: 299 YGFRNIQNMILKLKKGKFP 317
Y +++ N + K +K K P
Sbjct: 861 YTTKHLHNDVEKERKEKLP 879
>gi|93102371 polybromo 1 isoform 2 [Homo sapiens]
Length = 1582
Score = 30.0 bits (66), Expect = 3.9
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 256 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 298
R+ +LF E + EV RA R N+ E+ L KNGE++L A +
Sbjct: 833 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 892
Query: 299 YGFRNIQNMILKLKKGKFP 317
Y +++ N + K +K K P
Sbjct: 893 YTTKHLHNDVEKERKEKLP 911
>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
Length = 1582
Score = 30.0 bits (66), Expect = 3.9
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 256 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 298
R+ +LF E + EV RA R N+ E+ L KNGE++L A +
Sbjct: 833 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 892
Query: 299 YGFRNIQNMILKLKKGKFP 317
Y +++ N + K +K K P
Sbjct: 893 YTTKHLHNDVEKERKEKLP 911
>gi|156547039 zinc finger protein 223 [Homo sapiens]
Length = 482
Score = 30.0 bits (66), Expect = 3.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 2 KCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEK 37
KCE C +K + + D Q+N S + PS ++ G++
Sbjct: 429 KCEDCGKKLVYRSYRKDQQKNHSGENPSKCEDCGKR 464
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 29.3 bits (64), Expect = 6.7
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 8 RKECSKKTKTDDQENVSADAPSPAQEN-----GEKCDTSKHKVLVVSVCPQSLPYFAAKF 62
R + K+T+T+ + +S D P P + GE C +K V++C ++P+ +
Sbjct: 601 RTKTGKQTRTNAKRKLSDD-PCPVESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRL 659
Query: 63 NLS 65
LS
Sbjct: 660 ELS 662
>gi|239753557 PREDICTED: zinc finger protein 852 [Homo sapiens]
Length = 530
Score = 28.9 bits (63), Expect = 8.8
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 2 KCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPY 57
KC C R CS + D Q + + P E G+ SK + S+ PY
Sbjct: 300 KCNECGRAFCSNRNLIDHQRTHTGEKPYKCNECGKAFSRSKCLIRHQSLHTGEKPY 355
>gi|239753089 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 8.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 8 RKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPY 57
R E + ++++ A SP QE E+ S+ +V+ V CP S Y
Sbjct: 11 RSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
>gi|169165837 PREDICTED: zinc finger protein 852 [Homo sapiens]
Length = 496
Score = 28.9 bits (63), Expect = 8.8
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 2 KCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPY 57
KC C R CS + D Q + + P E G+ SK + S+ PY
Sbjct: 301 KCNECGRAFCSNRNLIDHQRTHTGEKPYKCNECGKAFSRSKCLIRHQSLHTGEKPY 356
>gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo
sapiens]
Length = 324
Score = 28.9 bits (63), Expect = 8.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 8 RKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPY 57
R E + ++++ A SP QE E+ S+ +V+ V CP S Y
Sbjct: 11 RSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
>gi|239742001 PREDICTED: zinc finger protein 852 [Homo sapiens]
Length = 530
Score = 28.9 bits (63), Expect = 8.8
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 2 KCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPY 57
KC C R CS + D Q + + P E G+ SK + S+ PY
Sbjct: 300 KCNECGRAFCSNRNLIDHQRTHTGEKPYKCNECGKAFSRSKCLIRHQSLHTGEKPY 355
>gi|239741520 PREDICTED: hypothetical protein XP_002342220 [Homo
sapiens]
Length = 96
Score = 28.9 bits (63), Expect = 8.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 8 RKECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPY 57
R E + ++++ A SP QE E+ S+ +V+ V CP S Y
Sbjct: 11 RSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
>gi|4502713 CDC45-like [Homo sapiens]
Length = 566
Score = 28.9 bits (63), Expect = 8.8
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 16 KTDDQEN-VSADAPSPAQENGEKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLC 74
+ +D+EN +S D + E + +H L S+C S Y AA+F L +RL
Sbjct: 255 RNEDEENTLSVDCTRISFEYDLRLVLYQHWSLHDSLCNTS--YTAARFKLWSVHGQKRLQ 312
Query: 75 GFLKSLG--VHYVFDTTIAADFSILESQKEFV 104
FL +G + V A D S+ E+ +E +
Sbjct: 313 EFLADMGLPLKQVKQKFQAMDISLKENLREMI 344
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 28.9 bits (63), Expect = 8.8
Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 182 DKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL---FGDLKEDK 238
+++L +E + + R D L + + +L R+ +DT F + K +
Sbjct: 323 ERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQE 382
Query: 239 VTRHDGASSDGHLAHIFRHAAKELFN-EDVEEVTYRALR----NKDFQEVTLEKNGEVVL 293
+ R A + ++ + H ++ + E + +T + L+ + +F+ ++K+
Sbjct: 383 LKRK--AQIEANIVALLEHCSRNINRIEQISSITNQELKMMQDDLNFKSTEVQKSQSTAQ 440
Query: 294 RFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQME 353
+ +IQ + L L+K +E+L T + H+ K+ ++QM
Sbjct: 441 NLTS-----DIQRLQLDLQK-------MELLE----------SKMTEEQHSLKSKIKQMT 478
Query: 354 G---IYADIPVRRPESSAHVQELYQEWL---------EGINSPKAREVLHTTYQSQERGT 401
IY D+P + +++L+QE + + I + E Q QE T
Sbjct: 479 TDLEIYNDLPALKSSGEEKIKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENET 538
Query: 402 HS----LDIKW 408
HS L+ KW
Sbjct: 539 HSQLTNLERKW 549
>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 28.9 bits (63), Expect = 8.8
Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 182 DKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL---FGDLKEDK 238
+++L +E + + R D L + + +L R+ +DT F + K +
Sbjct: 323 ERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQE 382
Query: 239 VTRHDGASSDGHLAHIFRHAAKELFN-EDVEEVTYRALR----NKDFQEVTLEKNGEVVL 293
+ R A + ++ + H ++ + E + +T + L+ + +F+ ++K+
Sbjct: 383 LKRK--AQIEANIVALLEHCSRNINRIEQISSITNQELKMMQDDLNFKSTEVQKSQSTAQ 440
Query: 294 RFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQME 353
+ +IQ + L L+K +E+L T + H+ K+ ++QM
Sbjct: 441 NLTS-----DIQRLQLDLQK-------MELLE----------SKMTEEQHSLKSKIKQMT 478
Query: 354 G---IYADIPVRRPESSAHVQELYQEWL---------EGINSPKAREVLHTTYQSQERGT 401
IY D+P + +++L+QE + + I + E Q QE T
Sbjct: 479 TDLEIYNDLPALKSSGEEKIKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENET 538
Query: 402 HS----LDIKW 408
HS L+ KW
Sbjct: 539 HSQLTNLERKW 549
>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 28.9 bits (63), Expect = 8.8
Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 48/251 (19%)
Query: 182 DKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL---FGDLKEDK 238
+++L +E + + R D L + + +L R+ +DT F + K +
Sbjct: 323 ERQLTDTKEKINQFIEEIRQLDMDLEEHQGEMNQKYKELKKREEHMDTFIETFEETKNQE 382
Query: 239 VTRHDGASSDGHLAHIFRHAAKELFN-EDVEEVTYRALR----NKDFQEVTLEKNGEVVL 293
+ R A + ++ + H ++ + E + +T + L+ + +F+ ++K+
Sbjct: 383 LKRK--AQIEANIVALLEHCSRNINRIEQISSITNQELKMMQDDLNFKSTEVQKSQSTAQ 440
Query: 294 RFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQME 353
+ +IQ + L L+K +E+L T + H+ K+ ++QM
Sbjct: 441 NLTS-----DIQRLQLDLQK-------MELLE----------SKMTEEQHSLKSKIKQMT 478
Query: 354 G---IYADIPVRRPESSAHVQELYQEWL---------EGINSPKAREVLHTTYQSQERGT 401
IY D+P + +++L+QE + + I + E Q QE T
Sbjct: 479 TDLEIYNDLPALKSSGEEKIKKLHQERMILSTHRNAFKKIMEKQNIEYEALKTQLQENET 538
Query: 402 HS----LDIKW 408
HS L+ KW
Sbjct: 539 HSQLTNLERKW 549
>gi|157743245 WD repeat domain 43 [Homo sapiens]
Length = 677
Score = 28.9 bits (63), Expect = 8.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 9 KECSKKTKTDDQENVSADAPSPAQENGEKCDTSKHKVL 46
+E S+ K +D E DA +ENGE DT+ K L
Sbjct: 625 EEESESEKDEDVEEEDEDAEGKDEENGEDRDTASEKEL 662
>gi|148613880 hypothetical protein LOC145773 [Homo sapiens]
Length = 368
Score = 28.9 bits (63), Expect = 8.8
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 182 DKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTR 241
++ +E LQE + + S G + L + E+ Q+ GDL R A D L + T
Sbjct: 94 NRDIEVLQEQIRARDNISYGTNSALKTLEMRQLSGLGDLRGRVARCDASIARLSAEHKTT 153
Query: 242 HDG 244
++G
Sbjct: 154 YEG 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,965,518
Number of Sequences: 37866
Number of extensions: 698210
Number of successful extensions: 2034
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2006
Number of HSP's gapped (non-prelim): 37
length of query: 408
length of database: 18,247,518
effective HSP length: 105
effective length of query: 303
effective length of database: 14,271,588
effective search space: 4324291164
effective search space used: 4324291164
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.