Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NARFL Sequence: fasta or formatted (476aa) NCBI GI: 11968051
Description:

nuclear prelamin A recognition factor-like

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         39           2
 C cysteine            2.9         14           1
 D aspartate           4.8         23           2
 E glutamate           6.9         33           3
 F phenylalanine       4.8         23           2
 G glycine             7.4         35           3
 H histidine           3.8         18           1
 I isoleucine          3.2         15           1
 K lysine              4.6         22           2
 L leucine             9.9         47           2
 M methionine          1.5          7           1
 N asparagine          1.9          9           1
 P proline             5.0         24           1
 Q glutamine           6.3         30           3
 R arginine            6.7         32           2
 S serine              7.1         34           1
 T threonine           4.8         23           2
 V valine              6.9         33           3
 W tryptophan          0.6          3           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear prelamin A recognition factor-like 
NARF                  0.434   nuclear prelamin A recognition factor isoform a [Homo...
NARF                  0.410   nuclear prelamin A recognition factor isoform b [Hom...
NARF                  0.406   nuclear prelamin A recognition factor isoform c [Hom...
NARF                  0.390   nuclear prelamin A recognition factor isoform d [Ho...
CYTSA                 0.006   cytospin A 
CYTSA                 0.006   cytospin A 
CACNA1B               0.006   calcium channel, voltage-dependent, N type, alpha 1B ...
POU6F1                0.005   POU class 6 homeobox 1 
NR1H4                 0.004   nuclear receptor subfamily 1, group H, member 4 [Homo...
TAOK1                 0.004   TAO kinase 1 
STARD8                0.004   StAR-related lipid transfer (START) domain containi...
STARD8                0.004   StAR-related lipid transfer (START) domain containi...
STARD8                0.004   StAR-related lipid transfer (START) domain containin...
GIPC2                 0.004   PDZ domain protein GIPC2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press