Guide to the Human Genome
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Name: LOC100289357 Sequence: fasta or formatted (96aa) NCBI GI: 239741520
Description:

PREDICTED: hypothetical protein XP_002342220

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         12           2
 C cysteine            2.1          2           1
 D aspartate           1.0          1           1
 E glutamate           4.2          4           1
 F phenylalanine       2.1          2           1
 G glycine             6.2          6           1
 H histidine           3.1          3           1
 I isoleucine          1.0          1           1
 K lysine              2.1          2           1
 L leucine             3.1          3           1
 M methionine          1.0          1           1
 N asparagine          1.0          1           1
 P proline            13.5         13           2
 Q glutamine           4.2          4           2
 R arginine           13.5         13           1
 S serine             12.5         12           2
 T threonine           7.3          7           2
 V valine              7.3          7           3
 W tryptophan          1.0          1           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342220 
LOC100292837          0.960   PREDICTED: hypothetical protein 
LOC100290612          0.948   PREDICTED: hypothetical protein XP_002348127 
GFRA4                 0.075   GDNF family receptor alpha 4 isoform b precursor [Ho...
LOC100130882          0.057   PREDICTED: hypothetical protein 
LOC100130882          0.057   PREDICTED: hypothetical protein 
LOC100130882          0.057   PREDICTED: hypothetical protein 
SOX7                  0.052   SRY-box 7 
ZBTB4                 0.046   zinc finger and BTB domain containing 4 
ZBTB4                 0.046   zinc finger and BTB domain containing 4 
DTX1                  0.046   deltex homolog 1 
LOC100293347          0.040   PREDICTED: hypothetical protein isoform 1 
LOC100288552          0.040   PREDICTED: hypothetical protein isoform 1 
LOC100288552          0.040   PREDICTED: hypothetical protein XP_002343707 isofor...
SMR3A                 0.040   submaxillary gland androgen regulated protein 3 homo...
PRG4                  0.040   proteoglycan 4 isoform D 
PRG4                  0.040   proteoglycan 4 isoform C 
PRG4                  0.040   proteoglycan 4 isoform B 
PRG4                  0.040   proteoglycan 4 isoform A 
LOC100291756          0.040   PREDICTED: hypothetical protein XP_002345525 
LOC100288538          0.040   PREDICTED: hypothetical protein 
LOC100288538          0.040   PREDICTED: hypothetical protein XP_002343816 
KLHL17                0.040   kelch-like 17 
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
LOC100293818          0.034   PREDICTED: hypothetical protein 
CACNA1A               0.029   calcium channel, alpha 1A subunit isoform 4 
LOC100128511          0.029   PREDICTED: hypothetical protein 
LOC100128511          0.029   PREDICTED: hypothetical protein 
LOC100128511          0.029   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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