Guide to the Human Genome
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Name: FOXB1 Sequence: fasta or formatted (325aa) NCBI GI: 105554437
Description:

forkhead box B1

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         38           3
 C cysteine            0.9          3           1
 D aspartate           2.8          9           1
 E glutamate           2.2          7           1
 F phenylalanine       3.4         11           1
 G glycine             5.8         19           2
 H histidine           2.8          9           1
 I isoleucine          4.3         14           2
 K lysine              4.3         14           1
 L leucine             8.9         29           2
 M methionine          3.4         11           1
 N asparagine          3.1         10           1
 P proline            12.9         42           2
 Q glutamine           4.9         16           3
 R arginine            4.3         14           3
 S serine             11.4         37           2
 T threonine           5.2         17           2
 V valine              2.8          9           1
 W tryptophan          0.9          3           1
 Y tyrosine            4.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box B1 
FOXB2                 0.324   forkhead box B2 
FOXA2                 0.243   forkhead box A2 isoform 2 
FOXA2                 0.243   forkhead box A2 isoform 1 
FOXA3                 0.236   forkhead box A3 
FOXA1                 0.225   forkhead box A1 
FOXD1                 0.216   forkhead box D1 
FOXD3                 0.211   forkhead box D3 
FOXD2                 0.211   forkhead box D2 
FOXC2                 0.210   forkhead box C2 
FOXC1                 0.210   forkhead box C1 
FOXE1                 0.202   forkhead box E1 
FOXS1                 0.202   forkhead box S1 
FOXE3                 0.194   forkhead box E3 
FOXD4L3               0.194   forkhead box D4-like 3 
FOXD4L2               0.194   forkhead box D4-like 2 
FOXD4L4               0.194   forkhead box D4-like 4 
FOXL1                 0.192   forkhead box L1 
FOXD4L6               0.191   forkhead box D4-like 6 
FOXD4L1               0.188   forkhead box D4-like 1 
FOXD4                 0.188   forkhead box D4 
FOXD4L5               0.186   forkhead box D4-like 5 
FOXL2                 0.175   forkhead box L2 
FOXI3                 0.174   forkhead box I3 
FOXI1                 0.172   forkhead box I1 isoform a 
FOXF2                 0.172   forkhead box F2 
FOXG1                 0.167   forkhead box G1 
FOXI2                 0.166   forkhead box I2 
FOXF1                 0.161   forkhead box F1 
LOC651986             0.150   PREDICTED: similar to forkhead box L2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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