Guide to the Human Genome
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Name: FOXS1 Sequence: fasta or formatted (330aa) NCBI GI: 28973785
Description:

forkhead box S1

Referenced in:

FOX Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         28           2
 C cysteine            2.7          9           1
 D aspartate           3.0         10           2
 E glutamate           4.2         14           1
 F phenylalanine       5.2         17           3
 G glycine            10.6         35           2
 H histidine           1.8          6           1
 I isoleucine          2.4          8           1
 K lysine              3.0         10           1
 L leucine             7.3         24           2
 M methionine          2.7          9           1
 N asparagine          2.1          7           1
 P proline            15.2         50           2
 Q glutamine           3.6         12           3
 R arginine            7.3         24           5
 S serine              8.2         27           4
 T threonine           6.1         20           2
 V valine              2.4          8           1
 W tryptophan          0.9          3           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   forkhead box S1 
FOXC1                 0.252   forkhead box C1 
FOXC2                 0.235   forkhead box C2 
FOXD2                 0.208   forkhead box D2 
FOXL1                 0.208   forkhead box L1 
FOXE3                 0.202   forkhead box E3 
FOXD1                 0.201   forkhead box D1 
FOXD4L1               0.195   forkhead box D4-like 1 
FOXL2                 0.190   forkhead box L2 
FOXB1                 0.190   forkhead box B1 
FOXD4L3               0.189   forkhead box D4-like 3 
FOXE1                 0.187   forkhead box E1 
FOXD4L2               0.187   forkhead box D4-like 2 
FOXD4L5               0.187   forkhead box D4-like 5 
FOXD4L6               0.187   forkhead box D4-like 6 
FOXD4L4               0.187   forkhead box D4-like 4 
FOXI2                 0.187   forkhead box I2 
FOXD3                 0.187   forkhead box D3 
FOXD4                 0.183   forkhead box D4 
FOXI3                 0.183   forkhead box I3 
FOXA3                 0.177   forkhead box A3 
FOXB2                 0.177   forkhead box B2 
FOXI1                 0.176   forkhead box I1 isoform a 
FOXA1                 0.174   forkhead box A1 
LOC651986             0.173   PREDICTED: similar to forkhead box L2 
LOC651986             0.173   PREDICTED: similar to forkhead box L2 
LOC651986             0.173   PREDICTED: similar to forkhead box L2 
FOXA2                 0.171   forkhead box A2 isoform 2 
FOXA2                 0.171   forkhead box A2 isoform 1 
FOXF1                 0.170   forkhead box F1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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