TRIM47 32750

Name: TRIM47	Sequence: fasta or formatted (638aa)		NCBI GI: 54792146
Description: tripartite motif-containing 47		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.7 68 4 C cysteine 4.1 26 2 D aspartate 4.2 27 1 E glutamate 8.2 52 2 F phenylalanine 3.8 24 2 G glycine 8.3 53 2 H histidine 2.5 16 1 I isoleucine 1.9 12 2 K lysine 2.4 15 2 L leucine 12.2 78 2 M methionine 1.1 7 1 N asparagine 1.4 9 1 P proline 9.2 59 2 Q glutamine 4.5 29 1 R arginine 8.6 55 2 S serine 7.5 48 2 T threonine 2.0 13 1 V valine 4.9 31 1 W tryptophan 1.1 7 1 Y tyrosine 1.4 9 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 47 TRIM25 0.126 tripartite motif-containing 25 TRIM16 0.115 tripartite motif-containing 16 TRIM29 0.068 tripartite motif protein TRIM29 TRIM8 0.055 tripartite motif-containing 8 TRIM56 0.054 tripartite motif-containing 56 TRIM7 0.054 tripartite motif-containing 7 isoform 1 TRIM16L 0.054 tripartite motif-containing 16-like TRIM65 0.051 tripartite motif-containing 65 TRIM39 0.045 tripartite motif-containing 39 isoform 1 LOC100291544 0.045 PREDICTED: hypothetical protein XP_002347761 TRIM46 0.044 tripartite motif-containing 46 TRIM11 0.041 tripartite motif-containing 11 MID1 0.040 midline 1 MID1 0.040 midline 1 MID1 0.040 midline 1 MID2 0.037 midline 2 isoform 2 MID2 0.037 midline 2 isoform 1 TRIM39 0.037 tripartite motif-containing 39 isoform 2 TRIM7 0.037 tripartite motif-containing 7 isoform 4 TRIM58 0.037 tripartite motif-containing 58 TRIM27 0.036 ret finger protein TRIM14 0.035 tripartite motif protein TRIM14 isoform alpha TRIM14 0.035 tripartite motif protein TRIM14 isoform alpha TRIM14 0.035 tripartite motif protein TRIM14 isoform alpha TRIM9 0.034 tripartite motif protein 9 isoform 2 TRIM9 0.034 tripartite motif protein 9 isoform 1 TRIM71 0.033 tripartite motif-containing 71 TRIM72 0.031 tripartite motif-containing 72 TRIM10 0.028 tripartite motif-containing 10 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.