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Search of human proteins with 54792090
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54792090 hypothetical protein LOC23351 [Homo sapiens]
(678 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54792090 hypothetical protein LOC23351 [Homo sapiens] 1399 0.0
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 262 9e-70
gi|48928019 Nedd4 binding protein 1 [Homo sapiens] 252 7e-67
gi|148886668 zinc finger CCCH-type containing 12C [Homo sapiens] 186 5e-47
gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens] 186 6e-47
gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens] 180 3e-45
gi|148762945 zinc finger CCCH-type containing 12D [Homo sapiens] 173 4e-43
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 57 7e-08
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 57 7e-08
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 57 7e-08
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 57 7e-08
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 55 3e-07
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 54 4e-07
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 54 4e-07
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 52 2e-06
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 52 2e-06
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 52 2e-06
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 52 2e-06
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 52 2e-06
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 52 2e-06
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 52 2e-06
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 52 2e-06
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 52 2e-06
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 52 2e-06
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens] 52 2e-06
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 51 3e-06
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 51 3e-06
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 51 3e-06
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 51 3e-06
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 51 3e-06
>gi|54792090 hypothetical protein LOC23351 [Homo sapiens]
Length = 678
Score = 1399 bits (3622), Expect = 0.0
Identities = 678/678 (100%), Positives = 678/678 (100%)
Query: 1 MPTWGARPASPDRFAVSAEAENKVREQQPHVERIFSVGVSVLPKDCPDNPHIWLQLEGPK 60
MPTWGARPASPDRFAVSAEAENKVREQQPHVERIFSVGVSVLPKDCPDNPHIWLQLEGPK
Sbjct: 1 MPTWGARPASPDRFAVSAEAENKVREQQPHVERIFSVGVSVLPKDCPDNPHIWLQLEGPK 60
Query: 61 ENASRAKEYLKGLCSPELQDEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPRAPGSLM 120
ENASRAKEYLKGLCSPELQDEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPRAPGSLM
Sbjct: 61 ENASRAKEYLKGLCSPELQDEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPRAPGSLM 120
Query: 121 ISGLTEAFVMAQSRVEELAERLSWDFTPGPSSGASQCTGVLRDFSALLQSPGDAHREALL 180
ISGLTEAFVMAQSRVEELAERLSWDFTPGPSSGASQCTGVLRDFSALLQSPGDAHREALL
Sbjct: 121 ISGLTEAFVMAQSRVEELAERLSWDFTPGPSSGASQCTGVLRDFSALLQSPGDAHREALL 180
Query: 181 QLPLAVQEELLSLVQEASSGQGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSM 240
QLPLAVQEELLSLVQEASSGQGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSM
Sbjct: 181 QLPLAVQEELLSLVQEASSGQGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSM 240
Query: 241 GPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESA 300
GPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESA
Sbjct: 241 GPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESA 300
Query: 301 PLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSP 360
PLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSP
Sbjct: 301 PLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSP 360
Query: 361 PPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARGGNLVTGTQRFKEAL 420
PPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARGGNLVTGTQRFKEAL
Sbjct: 361 PPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARGGNLVTGTQRFKEAL 420
Query: 421 QDPFTLCLANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVF 480
QDPFTLCLANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVF
Sbjct: 421 QDPFTLCLANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVF 480
Query: 481 VPQWRFSKDAKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIV 540
VPQWRFSKDAKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIV
Sbjct: 481 VPQWRFSKDAKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIV 540
Query: 541 SNDQFRDLAEESEKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGS 600
SNDQFRDLAEESEKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGS
Sbjct: 541 SNDQFRDLAEESEKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGS 600
Query: 601 SKAQHPSRGFAEHGKQQQGREEEKGSGGIRKTRETERLRRQLLEVFWGQDHKVDFILQRE 660
SKAQHPSRGFAEHGKQQQGREEEKGSGGIRKTRETERLRRQLLEVFWGQDHKVDFILQRE
Sbjct: 601 SKAQHPSRGFAEHGKQQQGREEEKGSGGIRKTRETERLRRQLLEVFWGQDHKVDFILQRE 660
Query: 661 PYCRDINQLSEALLSLNF 678
PYCRDINQLSEALLSLNF
Sbjct: 661 PYCRDINQLSEALLSLNF 678
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 262 bits (669), Expect = 9e-70
Identities = 143/284 (50%), Positives = 183/284 (64%), Gaps = 30/284 (10%)
Query: 391 GMARGRGPQWKRGARGGNLVTGTQRFKEALQDPFTLCLANVPGQPDLRHIVIDGSNVAMV 450
G G Q R + + VT QR+ EAL PF L L+ PG LR +VIDGS+VAMV
Sbjct: 746 GAWEGAPRQPPRHLQANSTVTSFQRYHEALNTPFELNLSGEPGNQGLRRVVIDGSSVAMV 805
Query: 451 HGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSKDAKVRESHFLQKLYSLSLLSLT 510
HGLQH+FS RGIA+AVQ+FW+RGHR++TVFVP W+ K+ +VRESHFL KL+SL +LS+T
Sbjct: 806 HGLQHFFSCRGIAMAVQFFWNRGHREVTVFVPTWQLKKNRRVRESHFLTKLHSLKMLSIT 865
Query: 511 PSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESEKWMAIIRERLLPFTFVG 570
PS++ +GK+I++YD RFMVKLAEETDGIIV+N+Q L S+K M +++RLLPFTF G
Sbjct: 866 PSQLENGKKITTYDYRFMVKLAEETDGIIVTNEQIHILMNSSKKLM--VKDRLLPFTFAG 923
Query: 571 NLFMVPDDPLGRNGPTLDEFLKKPAR----------------------TQGSSKAQH--- 605
NLFMVPDDPLGR+GPTLDEFLKKP R T+ S A
Sbjct: 924 NLFMVPDDPLGRDGPTLDEFLKKPNRLDTDIGNFLKVWKTLPPSSASVTELSDDADSGPL 983
Query: 606 ---PSRGFAEHGKQQQGREEEKGSGGIRKTRETERLRRQLLEVF 646
P+ K+++ EE++ G +K E + L L VF
Sbjct: 984 ESLPNMEEVREEKEERQDEEQRQGQGTQKAAEEDDLDSSLASVF 1027
Score = 197 bits (501), Expect = 3e-50
Identities = 106/208 (50%), Positives = 134/208 (64%), Gaps = 4/208 (1%)
Query: 5 GARPASPDRFAVSAEAENKVREQQPHVERIFSVGVSVLPKDCPDNPHIWLQLEGPKENAS 64
G P + + F V +++ +V+ Q+ V+RIF V ++ + PD P+ WLQLEGP+EN
Sbjct: 5 GGDPPAQEWFMVQTKSKPRVQRQRLQVQRIFRVKLNAF-QSRPDTPYFWLQLEGPRENMG 63
Query: 65 RAKEYLKGLCSPELQDEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPRAPGSLMISGL 124
+AKEYLKGLCSPEL E+ YPP LHC FLGAQG FLDCL WST A+LVP PGSLM+ GL
Sbjct: 64 KAKEYLKGLCSPELWKEVRYPPILHCAFLGAQGLFLDCLCWSTLAYLVPGPPGSLMVGGL 123
Query: 125 TEAFVMAQSRVEELAERLSWDFTPGPSSGASQCTGVLRDFSALLQSPGDAHREALLQLPL 184
TE+F+M Q+ +EEL RL W P + V R F AL+ GD H LLQLP
Sbjct: 124 TESFIMTQNWLEELVGRLRWGPAPLLTPRGIWEAEVTRAFGALVWIRGDQHAGDLLQLPP 183
Query: 185 AVQEELLSLVQEASSGQGPGALASWEGR 212
AVQE LLSLV++A+ G + W R
Sbjct: 184 AVQELLLSLVRDAA---GKEDIIEWLSR 208
>gi|48928019 Nedd4 binding protein 1 [Homo sapiens]
Length = 896
Score = 252 bits (644), Expect = 7e-67
Identities = 140/306 (45%), Positives = 187/306 (61%), Gaps = 41/306 (13%)
Query: 410 VTGTQRFKEALQDPFTLCLANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYF 469
VTG QRF++ L+ P+ L L N PG+ DL+HIVIDGSNVA+ HGL+ +FS RGIAIAV+YF
Sbjct: 590 VTGVQRFRDTLKIPYKLELKNEPGRTDLKHIVIDGSNVAITHGLKKFFSCRGIAIAVEYF 649
Query: 470 WDRGHRDITVFVPQWRFSKDAKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMV 529
W G+R+ITVFVPQWR +D V E HFL +L L +LSLTP+R++ G+RI+S+DDRF++
Sbjct: 650 WKLGNRNITVFVPQWRTRRDPNVTEQHFLTQLQELGILSLTPARMVFGERIASHDDRFLL 709
Query: 530 KLAEETDGIIVSNDQFRDLAEESEKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDE 589
LA++T GIIV+ND FR+ ES W II +RLL +TFVG++FMVPDDPLGR+GP L+E
Sbjct: 710 HLADKTGGIIVTNDNFREFVNESVSWREIITKRLLQYTFVGDIFMVPDDPLGRSGPRLEE 769
Query: 590 FLKK--------------------------PARTQGSSKAQHPSR---GFAEHGKQQQ-- 618
FL+K P S+ Q P+R + H QQ
Sbjct: 770 FLQKEVCLRDMQPLLSALPNVGMFDPSFRVPGTQAASTSHQPPTRIQGAPSSHWLPQQPH 829
Query: 619 --------GREEEKGSGGIRKTRETERLRRQLLEVFWGQDH--KVDFILQREPYCRDINQ 668
++ R + ET LR LL++F + K+D IL PY +D+N
Sbjct: 830 FPLLPALPSLQQNLPMPAQRSSAETNELREALLKIFPDSEQRLKIDQILVAHPYMKDLNA 889
Query: 669 LSEALL 674
LS +L
Sbjct: 890 LSAMVL 895
Score = 106 bits (265), Expect = 6e-23
Identities = 68/187 (36%), Positives = 102/187 (54%), Gaps = 6/187 (3%)
Query: 12 DRFAVSAEAENKVREQQPHVERIFSVGVSVLPKDCPDNP---HIWLQLEGPKENASRAKE 68
D F AE + + + +E +F V ++VL + P IWLQL G +E AKE
Sbjct: 8 DEFTAPAEKAELLEQSRGRIEGLFGVSLAVLGALGAEEPLPARIWLQLCGAQEAVHSAKE 67
Query: 69 YLKGLCSPELQDEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPRAPGSLMISGLTEAF 128
Y+KG+C PEL++ YP +HCIF+GA+ FL L T A L G L I G EA
Sbjct: 68 YIKGICEPELEERECYPKDMHCIFVGAESLFLKSLIQDTCADLCILDIGLLGIRGSAEAV 127
Query: 129 VMAQSRVEELAERLSWDFTPGPSSGASQCTGVLRDFSALLQSPGDAHREALLQLPLAVQE 188
VMA+S +++ +L + PSS + + V R+F +++ D + LL LP ++++
Sbjct: 128 VMARSHIQQFV-KLFENKENLPSS--QKESEVKREFKQFVEAHADNYTMDLLILPTSLKK 184
Query: 189 ELLSLVQ 195
ELL+L Q
Sbjct: 185 ELLTLTQ 191
>gi|148886668 zinc finger CCCH-type containing 12C [Homo sapiens]
Length = 883
Score = 186 bits (473), Expect = 5e-47
Identities = 99/194 (51%), Positives = 127/194 (65%), Gaps = 3/194 (1%)
Query: 436 DLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSK---DAKV 492
+LR IVIDGSNVAM HG + FS RGI +AV +F +RGH+DITVFVP WR + DA +
Sbjct: 244 NLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRKEQSRPDALI 303
Query: 493 RESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEES 552
+ L+KL +L TPSR + G+R+ YDDRF+VKLA E+DGIIVSND +RDLA E
Sbjct: 304 TDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLANEK 363
Query: 553 EKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGSSKAQHPSRGFAE 612
+W I ERLL ++FV + FM PDDPLGR+GP+LD FL+K K P
Sbjct: 364 PEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPIVPEHKKQPCPYGKKCT 423
Query: 613 HGKQQQGREEEKGS 626
+G + + E+GS
Sbjct: 424 YGHKCKYYHPERGS 437
>gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens]
Length = 599
Score = 186 bits (472), Expect = 6e-47
Identities = 94/174 (54%), Positives = 119/174 (68%), Gaps = 3/174 (1%)
Query: 436 DLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSK---DAKV 492
DLR +VIDGSNVAM HG + FS RGI +AV +F +RGH DITVFVP WR + D +
Sbjct: 134 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSWRKEQPRPDVPI 193
Query: 493 RESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEES 552
+ H L++L +L TPSR + GKR+ YDDRF+VKLA E+DGI+VSND +RDL E
Sbjct: 194 TDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGER 253
Query: 553 EKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGSSKAQHP 606
++W I ERLL ++FV + FM PDDPLGR+GP+LD FL+K T K P
Sbjct: 254 QEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLTLEHRKQPCP 307
>gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens]
Length = 825
Score = 180 bits (457), Expect = 3e-45
Identities = 97/218 (44%), Positives = 133/218 (61%), Gaps = 3/218 (1%)
Query: 431 VPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSK-- 488
+ +LR +VIDGSNVAM HG + FS RGI +AV +F D+GH+DITVFVP WR +
Sbjct: 173 IDNSDNLRPVVIDGSNVAMSHGNKEEFSCRGIQLAVDWFLDKGHKDITVFVPAWRKEQSR 232
Query: 489 -DAKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRD 547
DA + + L+KL +L TPSR + G+R+ YDDRF+VKLA ++DGIIVSND +RD
Sbjct: 233 PDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFDSDGIIVSNDNYRD 292
Query: 548 LAEESEKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGSSKAQHPS 607
L E +W I ERLL ++FV + FM PDDPLGR+GP+L+ FL+K K P
Sbjct: 293 LQVEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPIVPEHKKQPCPY 352
Query: 608 RGFAEHGKQQQGREEEKGSGGIRKTRETERLRRQLLEV 645
+G + + E+ + R + R+ +L V
Sbjct: 353 GKKCTYGHKCKYYHPERANQPQRSVADELRISAKLSTV 390
>gi|148762945 zinc finger CCCH-type containing 12D [Homo sapiens]
Length = 321
Score = 173 bits (439), Expect = 4e-43
Identities = 93/183 (50%), Positives = 117/183 (63%), Gaps = 9/183 (4%)
Query: 437 LRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSK---DAKVR 493
LR IVIDGSNVAM HG + FS RGI +AV +F DRGH I VFVP WR D +R
Sbjct: 89 LRPIVIDGSNVAMSHGNKETFSCRGIKLAVDWFRDRGHTYIKVFVPSWRKDSPRADTPIR 148
Query: 494 ESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESE 553
E H L +L ++L TPSR + GKR+ YDDR++VK+A E DG+IVSND +RDL E+
Sbjct: 149 EQHVLAELERQAVLVYTPSRKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDLQSENP 208
Query: 554 KWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGSSKAQHPSRGFAEH 613
+W I +RLL F+FV + FM PDDPLGR+GP+L FL + K PS +
Sbjct: 209 EWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPSLSNFLSR------KPKPPEPSWQHCPY 262
Query: 614 GKQ 616
GK+
Sbjct: 263 GKK 265
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 56.6 bits (135), Expect = 7e-08
Identities = 76/272 (27%), Positives = 99/272 (36%), Gaps = 53/272 (19%)
Query: 175 HREALLQLPLAVQE-ELLSLVQEASSG--QGPGALASWEGRSSALLGAQCQGVRAPPS-- 229
HRE L +P A++ ++++L E S QGP G S L G PP
Sbjct: 189 HRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP 248
Query: 230 --DGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
G + D G G +G RG K G K G P G K PG
Sbjct: 249 GPPGPKG-DPGIQGYHGRKGERGMPGMPGKHGAK-GAPGIAVAGMKGEPGI--------- 297
Query: 288 RPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRL 347
P + G E +P LG++ G A S G
Sbjct: 298 -PGTKGEKGAEGSPGLPGLLGQK-------------------GEKGDAGNSIGGG----- 332
Query: 348 HNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG- 406
G PP +P PP P G G G G GD+G++ G A +GP +G++G
Sbjct: 333 -RGEPGPPGLPGPPG---PKGEAGVDGQVGPPGQPGDKGER--GAAGEQGPDGPKGSKGE 386
Query: 407 ---GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
G +V EALQ+ TL L PG P
Sbjct: 387 PGKGEMVDYNGNINEALQEIRTLALMGPPGLP 418
Score = 38.5 bits (88), Expect = 0.021
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 38/200 (19%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 340 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 399
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 400 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 447
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPW------HCGDRGDCGDRGDVGDRG 386
+G R G+ PP PP PP H G G+ G++G+ G G
Sbjct: 448 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAG 497
Query: 387 DKQQGMARGRGPQWKRGARG 406
G+ GP G +G
Sbjct: 498 SPVPGLPGPEGPPGPPGLQG 517
Score = 33.1 bits (74), Expect = 0.86
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQ----------GMARGRGPQ 399
G PP P P P G G G++G G++GD+ G+ GP+
Sbjct: 505 GPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPK 564
Query: 400 WKRGARGGNLVTG 412
+RG++G +TG
Sbjct: 565 GERGSKGDPGMTG 577
Score = 31.6 bits (70), Expect = 2.5
Identities = 48/177 (27%), Positives = 60/177 (33%), Gaps = 32/177 (18%)
Query: 238 GSMGPGDCRGARGDTYAVEKEG--GKQGGPR-EMDWGWKELPGEEAWEREVALRPQSVGG 294
G GP RG GD +G GK G P + + G PGE+ + E V G
Sbjct: 446 GEKGP---RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPG 502
Query: 295 GARESAP-----LKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRLHN 349
P L+G K E L G + G G ++
Sbjct: 503 LPGPEGPPGPPGLQGVPGPKGEAGLDGA-----KGEKGFQG--------------EKGDR 543
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
G P P P P P G+RG GD G G G G+ GP +G RG
Sbjct: 544 GPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTG--AAGLPGLHGPPGDKGNRG 598
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 56.6 bits (135), Expect = 7e-08
Identities = 76/272 (27%), Positives = 99/272 (36%), Gaps = 53/272 (19%)
Query: 175 HREALLQLPLAVQE-ELLSLVQEASSG--QGPGALASWEGRSSALLGAQCQGVRAPPS-- 229
HRE L +P A++ ++++L E S QGP G S L G PP
Sbjct: 180 HRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP 239
Query: 230 --DGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
G + D G G +G RG K G K G P G K PG
Sbjct: 240 GPPGPKG-DPGIQGYHGRKGERGMPGMPGKHGAK-GAPGIAVAGMKGEPGI--------- 288
Query: 288 RPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRL 347
P + G E +P LG++ G A S G
Sbjct: 289 -PGTKGEKGAEGSPGLPGLLGQK-------------------GEKGDAGNSIGGG----- 323
Query: 348 HNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG- 406
G PP +P PP P G G G G GD+G++ G A +GP +G++G
Sbjct: 324 -RGEPGPPGLPGPPG---PKGEAGVDGQVGPPGQPGDKGER--GAAGEQGPDGPKGSKGE 377
Query: 407 ---GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
G +V EALQ+ TL L PG P
Sbjct: 378 PGKGEMVDYNGNINEALQEIRTLALMGPPGLP 409
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 428 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 487
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 488 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 547
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 548 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 596
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 597 TG--AAGLPGLHGPPGDKGNRG 616
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 331 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 390
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 391 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 438
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 439 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 486
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 487 AGSPGEKGEAGEKG 500
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 458 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 514
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 515 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 574
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 575 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 630
Query: 389 QQGMARG 395
A G
Sbjct: 631 GDQGAPG 637
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 56.6 bits (135), Expect = 7e-08
Identities = 76/272 (27%), Positives = 99/272 (36%), Gaps = 53/272 (19%)
Query: 175 HREALLQLPLAVQE-ELLSLVQEASSG--QGPGALASWEGRSSALLGAQCQGVRAPPS-- 229
HRE L +P A++ ++++L E S QGP G S L G PP
Sbjct: 218 HRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP 277
Query: 230 --DGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
G + D G G +G RG K G K G P G K PG
Sbjct: 278 GPPGPKG-DPGIQGYHGRKGERGMPGMPGKHGAK-GAPGIAVAGMKGEPGI--------- 326
Query: 288 RPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRL 347
P + G E +P LG++ G A S G
Sbjct: 327 -PGTKGEKGAEGSPGLPGLLGQK-------------------GEKGDAGNSIGGG----- 361
Query: 348 HNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG- 406
G PP +P PP P G G G G GD+G++ G A +GP +G++G
Sbjct: 362 -RGEPGPPGLPGPPG---PKGEAGVDGQVGPPGQPGDKGER--GAAGEQGPDGPKGSKGE 415
Query: 407 ---GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
G +V EALQ+ TL L PG P
Sbjct: 416 PGKGEMVDYNGNINEALQEIRTLALMGPPGLP 447
Score = 38.5 bits (88), Expect = 0.021
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 38/200 (19%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 369 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 428
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 429 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 476
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPW------HCGDRGDCGDRGDVGDRG 386
+G R G+ PP PP PP H G G+ G++G+ G G
Sbjct: 477 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAG 526
Query: 387 DKQQGMARGRGPQWKRGARG 406
G+ GP G +G
Sbjct: 527 SPVPGLPGPEGPPGPPGLQG 546
Score = 33.1 bits (74), Expect = 0.86
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQ----------GMARGRGPQ 399
G PP P P P G G G++G G++GD+ G+ GP+
Sbjct: 534 GPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPK 593
Query: 400 WKRGARGGNLVTG 412
+RG++G +TG
Sbjct: 594 GERGSKGDPGMTG 606
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Score = 31.6 bits (70), Expect = 2.5
Identities = 48/177 (27%), Positives = 60/177 (33%), Gaps = 32/177 (18%)
Query: 238 GSMGPGDCRGARGDTYAVEKEG--GKQGGPR-EMDWGWKELPGEEAWEREVALRPQSVGG 294
G GP RG GD +G GK G P + + G PGE+ + E V G
Sbjct: 475 GEKGP---RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPG 531
Query: 295 GARESAP-----LKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRLHN 349
P L+G K E L G + G G ++
Sbjct: 532 LPGPEGPPGPPGLQGVPGPKGEAGLDGA-----KGEKGFQG--------------EKGDR 572
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
G P P P P P G+RG GD G G G G+ GP +G RG
Sbjct: 573 GPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTG--AAGLPGLHGPPGDKGNRG 627
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 56.6 bits (135), Expect = 7e-08
Identities = 76/272 (27%), Positives = 99/272 (36%), Gaps = 53/272 (19%)
Query: 175 HREALLQLPLAVQE-ELLSLVQEASSG--QGPGALASWEGRSSALLGAQCQGVRAPPS-- 229
HRE L +P A++ ++++L E S QGP G S L G PP
Sbjct: 218 HRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP 277
Query: 230 --DGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
G + D G G +G RG K G K G P G K PG
Sbjct: 278 GPPGPKG-DPGIQGYHGRKGERGMPGMPGKHGAK-GAPGIAVAGMKGEPGI--------- 326
Query: 288 RPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRL 347
P + G E +P LG++ G A S G
Sbjct: 327 -PGTKGEKGAEGSPGLPGLLGQK-------------------GEKGDAGNSIGGG----- 361
Query: 348 HNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG- 406
G PP +P PP P G G G G GD+G++ G A +GP +G++G
Sbjct: 362 -RGEPGPPGLPGPPG---PKGEAGVDGQVGPPGQPGDKGER--GAAGEQGPDGPKGSKGE 415
Query: 407 ---GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
G +V EALQ+ TL L PG P
Sbjct: 416 PGKGEMVDYNGNINEALQEIRTLALMGPPGLP 447
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 466 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 525
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 526 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 585
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 586 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 634
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 635 TG--AAGLPGLHGPPGDKGNRG 654
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 369 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 428
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 429 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 476
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 477 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 524
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 525 AGSPGEKGEAGEKG 538
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 496 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 552
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 553 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 612
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 613 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 668
Query: 389 QQGMARG 395
A G
Sbjct: 669 GDQGAPG 675
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 54.7 bits (130), Expect = 3e-07
Identities = 65/216 (30%), Positives = 79/216 (36%), Gaps = 20/216 (9%)
Query: 200 GQGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG 259
G+GP GR + G PP E G+ GP G G + +
Sbjct: 906 GKGPRGETGPAGRPGEV------GPPGPPGPAGEKGSPGADGPAGAPGTPGPQ-GIAGQR 958
Query: 260 GKQGGPREM-DWGWKELPGEEAWEREVALRPQSVGGGARESAPLKGKALGKEEIALGGGG 318
G G P + + G+ LPG + Q G + E P +G +A G G
Sbjct: 959 GVVGLPGQRGERGFPGLPGPSGEPGK-----QGPSGASGERGP--PGPMGPPGLA-GPPG 1010
Query: 319 FCVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGD 378
PGA GS R S GA R G A PP P P AP P G GD G+
Sbjct: 1011 ESGREGAPGAEGSPGRDG-SPGAKG-DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGE 1068
Query: 379 RGDVGDRGDKQQGMARGRGPQWKRGARGGNLVTGTQ 414
G G G G RGP +G RG TG Q
Sbjct: 1069 TGPAGPAG--PVGPVGARGPAGPQGPRGDKGETGEQ 1102
Score = 44.7 bits (104), Expect = 3e-04
Identities = 59/200 (29%), Positives = 74/200 (37%), Gaps = 30/200 (15%)
Query: 222 QGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREM----DWGWKELPG 277
QG + PP + E +G MGP G G + E GK G P E G + LPG
Sbjct: 199 QGFQGPPGEPGEPGASGPMGPRGPPGPPGKN-GDDGEAGKPGRPGERGPPGPQGARGLPG 257
Query: 278 EEAWEREVALRPQSVGGGARESA-----------PLKGKALGKEEIALGGGGFCVHREPP 326
R S GA+ A P + A G+ +G G R P
Sbjct: 258 TAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQ----MGPRGLPGERGRP 313
Query: 327 GAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRG 386
GA G A + GA+ G A PP P P P G +G+ G +G G G
Sbjct: 314 GAPGPA-GARGNDGAT-------GAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEG 365
Query: 387 DKQQGMARGRGPQWKRGARG 406
QG+ GP GA G
Sbjct: 366 --PQGVRGEPGPPGPAGAAG 383
Score = 43.9 bits (102), Expect = 5e-04
Identities = 54/194 (27%), Positives = 66/194 (34%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQG-----GPREMDW--GWKEL 275
G P D ES +G GP RGA GD E G G GP D G K
Sbjct: 773 GPAGAPGDKGESGPSGPAGPTGARGAPGD----RGEPGPPGPAGFAGPPGADGQPGAKGE 828
Query: 276 PGEEAWEREVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRA 335
PG+ + + P G A P+ + A G G PPGA G A
Sbjct: 829 PGDAGAKGDAG--PPGPAGPAGPPGPIGNVGAPGAKGARGSAG------PPGATGFPGAA 880
Query: 336 AQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRG-DKQQGMAR 394
G PP P PP G G G RG+ G G + G
Sbjct: 881 --------------GRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPG 926
Query: 395 GRGPQWKRGARGGN 408
GP ++G+ G +
Sbjct: 927 PPGPAGEKGSPGAD 940
Score = 42.7 bits (99), Expect = 0.001
Identities = 75/256 (29%), Positives = 93/256 (36%), Gaps = 49/256 (19%)
Query: 162 RDFSALLQSPGDAHREALLQLPLAVQEELLSLVQEASSGQ-GPGALASWEGRSSALLGAQ 220
R FS L + GDA P + E S + + GQ GP L GR A A
Sbjct: 268 RGFSGLDGAKGDAG-------PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 320
Query: 221 CQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEA 280
+G TG GP GA G + E G QG PR + G + + GE
Sbjct: 321 ARGNDGATGAAGPPGPTGPAGPPGFPGAVG----AKGEAGPQG-PRGSE-GPQGVRGEPG 374
Query: 281 WEREVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRG 340
+ GA KG A G IA G GF PGA G
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKG-ANGAPGIA-GAPGF------PGARGP--------- 417
Query: 341 ASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK----QQGMARGR 396
S P+ P PP P+ + G+ G G +GD G +G+ QG
Sbjct: 418 ------------SGPQGPGGPPGPKG--NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Query: 397 GPQWKRGARGGNLVTG 412
G + KRGARG TG
Sbjct: 464 GEEGKRGARGEPGPTG 479
Score = 42.0 bits (97), Expect = 0.002
Identities = 62/207 (29%), Positives = 77/207 (37%), Gaps = 31/207 (14%)
Query: 202 GPGALASWEGRSSALLGAQCQ-GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGG 260
GP +A G ++G Q G R P S + G GP G RG G
Sbjct: 950 GPQGIAGQRG----VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPP-------G 998
Query: 261 KQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFC 320
G P G PGE RE A P + G R+ +P G+ G G
Sbjct: 999 PMGPP-----GLAGPPGESG--REGA--PGAEGSPGRDGSPGAKGDRGET----GPAGPP 1045
Query: 321 VHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRG 380
PGA G A +S R G A P P A P G RGD G+ G
Sbjct: 1046 GAPGAPGAPGPVGPAGKSG-----DRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETG 1100
Query: 381 DVGDRGDK-QQGMARGRGPQWKRGARG 406
+ GDRG K +G + +GP G+ G
Sbjct: 1101 EQGDRGIKGHRGFSGLQGPPGPPGSPG 1127
Score = 40.0 bits (92), Expect = 0.007
Identities = 59/207 (28%), Positives = 71/207 (34%), Gaps = 28/207 (13%)
Query: 202 GPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGK 261
GP A G++ G P E+ G GP G RG E G
Sbjct: 584 GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERG-------EQGP 636
Query: 262 QGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFCV 321
G P G++ LPG E +P G AP A G+ G G
Sbjct: 637 AGSP-----GFQGLPGPAGPPGEAG-KPGEQGVPGDLGAPGPSGARGER----GFPGERG 686
Query: 322 HREPPGAHG--SCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDR 379
+ PPG G + A + GA G+A P P AP G+RG G
Sbjct: 687 VQGPPGPAGPRGANGAPGNDGAK-------GDAGAPGAPGSQGAPGLQGMPGERGAAGLP 739
Query: 380 GDVGDRGDKQQGMARGRGPQWKRGARG 406
G GDRGD G G K G RG
Sbjct: 740 GPKGDRGD--AGPKGADGSPGKDGVRG 764
Score = 38.9 bits (89), Expect = 0.016
Identities = 57/218 (26%), Positives = 71/218 (32%), Gaps = 32/218 (14%)
Query: 201 QGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGG 260
QGP A EG+ A G+ PP + G G G +G G
Sbjct: 457 QGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPA-------G 509
Query: 261 KQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFC 320
++G P G K PGE E L P + G +P G G G
Sbjct: 510 ERGSPGPA--GPKGSPGEAGRPGEAGL-PGAKGLTGSPGSPGPDGKTGPP----GPAGQD 562
Query: 321 VHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRG 380
PPG G+ G A P P A P G+RG G G
Sbjct: 563 GRPGPPGPPGA-----------------RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPG 605
Query: 381 DVGDRGDKQQGMARG-RGPQWKRGARGGNLVTGTQRFK 417
VG G + A+G GP G RG G+ F+
Sbjct: 606 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQ 643
Score = 37.7 bits (86), Expect = 0.035
Identities = 61/204 (29%), Positives = 74/204 (36%), Gaps = 33/204 (16%)
Query: 222 QGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG-----GKQGGPREMDWGWKELP 276
+GV+ PP G GP GA G+ A G G QG P G + +P
Sbjct: 685 RGVQGPP---------GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP-----GLQGMP 730
Query: 277 GEEAWEREVALRPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREPPGAHGSCHR 334
GE R A P G R A KG + GK+ + G G P GA G
Sbjct: 731 GE----RGAAGLPGPKGD--RGDAGPKGADGSPGKDGVR-GLTGPIGPPGPAGAPGDKGE 783
Query: 335 AAQSRGASLL-QRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK----Q 389
+ S A R G+ P P P PP G G G+ GD G +GD
Sbjct: 784 SGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP 843
Query: 390 QGMARGRGPQWKRGARGGNLVTGT 413
G A GP GA G G+
Sbjct: 844 AGPAGPPGPIGNVGAPGAKGARGS 867
Score = 34.7 bits (78), Expect = 0.30
Identities = 63/240 (26%), Positives = 79/240 (32%), Gaps = 24/240 (10%)
Query: 202 GPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGK 261
GP +G+ A G+ P +G GPG G +G++ G+
Sbjct: 383 GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNS-------GE 435
Query: 262 QGGPREM-DWGWKELPGEEAWEREVALRPQSVGGGAR-ESAPLKGKALGKEEIALGGGGF 319
G P D G K PG + + GAR E P E G GF
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGF 495
Query: 320 CVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDR 379
PGA G A +G + +R G A P P P G +G G
Sbjct: 496 ------PGADG----VAGPKGPAG-ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP 544
Query: 380 GDVGDRGDKQQGMARGR----GPQWKRGARGGNLVTGTQRFKEALQDPFTLCLANVPGQP 435
G G G G+ GP GARG V G K A +P VPG P
Sbjct: 545 GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP 604
Score = 33.1 bits (74), Expect = 0.86
Identities = 57/213 (26%), Positives = 69/213 (32%), Gaps = 32/213 (15%)
Query: 201 QGPGALASWEGRSSALLGAQCQGVRAPPSD-GRESLD--TGSMGPGDCRGARGDTYAVEK 257
QGP AS E +G G+ PP + GRE GS G GA+GD
Sbjct: 985 QGPSG-ASGERGPPGPMGPP--GLAGPPGESGREGAPGAEGSPGRDGSPGAKGD----RG 1037
Query: 258 EGGKQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESAPLKGKALGKEEIALGGG 317
E G G P G PG + P G E+ P A G
Sbjct: 1038 ETGPAGPP-----GAPGAPGAPG-----PVGPAGKSGDRGETGPAGPAGPVGPVGARGPA 1087
Query: 318 GFCVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCG 377
G P G G + + + H G + P PP +P G G G
Sbjct: 1088 G------PQGPRGDKGETGEQGDRGI--KGHRGFSGLQGPPGPPGSPGEQGPSGASGPAG 1139
Query: 378 DRGDVGDRG----DKQQGMARGRGPQWKRGARG 406
RG G G D G+ GP RG G
Sbjct: 1140 PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTG 1172
Score = 32.7 bits (73), Expect = 1.1
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK----------------QQGMA 393
G + P +P PP AP P G G+ G+ G G G + + G
Sbjct: 182 GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP 241
Query: 394 RGRGPQWKRGARG 406
RGP +GARG
Sbjct: 242 GERGPPGPQGARG 254
Score = 31.2 bits (69), Expect = 3.3
Identities = 57/191 (29%), Positives = 64/191 (33%), Gaps = 16/191 (8%)
Query: 202 GPGALASWEGRSSALLGAQCQGVRAPPSDGRESL--DTGSMGPGDCRGARGDTYAVEKEG 259
GP LA G S +G +P DG D G GP GA G A G
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEG--SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG 1058
Query: 260 --GKQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESAPLKGKALGKEEIALGGG 317
GK G E P R A PQ G E+ + + G
Sbjct: 1059 PAGKSGDRGETGPAGPAGPVGPVGARGPA-GPQGPRGDKGETGEQGDRGIK------GHR 1111
Query: 318 GFCVHREPPGAHGSCHRAAQSRGAS--LLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGD 375
GF + PPG GS S GAS R G+A P P P G RG
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPS-GASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGR 1170
Query: 376 CGDRGDVGDRG 386
GD G VG G
Sbjct: 1171 TGDAGPVGPPG 1181
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 54.3 bits (129), Expect = 4e-07
Identities = 64/217 (29%), Positives = 82/217 (37%), Gaps = 42/217 (19%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWE 282
G + P + E D G GP +GDT G++G P G K PGE
Sbjct: 276 GPKGEPGEQGEKGDAGENGP------KGDT-------GEKGDPGSSAAGIKGEPGESG-- 320
Query: 283 REVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGAS 342
RP G P G I G GF + PG G ++G
Sbjct: 321 -----RPGQKGEPGLPGLP------GLPGIK-GEPGFIGPQGEPGLPG----LPGTKG-- 362
Query: 343 LLQRLHNGNASPPR--VPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARG-RGPQ 399
G A PP P AP P G+ G G +G GDRG+K A+G RGP
Sbjct: 363 -----ERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPP 417
Query: 400 WKRGARGG-NLVTGTQRFKEALQDPFTLCLANVPGQP 435
++G +G ++ EALQ TL + PG P
Sbjct: 418 GQKGDQGATEIIDYNGNLHEALQRITTLTVTGPPGPP 454
Score = 37.4 bits (85), Expect = 0.046
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK----QQGMARGRGPQWKRGAR 405
G A PP P PP PP GD G G RG G G+ +QG+ GP ++G+
Sbjct: 192 GQAGPPGPPGPPGPRGPP---GDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSI 248
Query: 406 GGNLVTGTQRFKEALQDPFTLCLANVPG 433
G + G K P + +PG
Sbjct: 249 GAPGIPGMNGQKGEPGLPGAVGQNGIPG 276
Score = 33.5 bits (75), Expect = 0.66
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 357 VPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
+P P P GD G+ G +GD G++GD A +G + G G
Sbjct: 274 IPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPG 323
Score = 30.0 bits (66), Expect = 7.3
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
PPG GS GA + + NG P +P P G+ G+ G++GD G+
Sbjct: 241 PPGQKGSI-------GAPGIPGM-NGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGE 292
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G K +G G +G
Sbjct: 293 NGPKGDTGEKGDPGSSAAGIKG 314
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 54.3 bits (129), Expect = 4e-07
Identities = 64/217 (29%), Positives = 82/217 (37%), Gaps = 42/217 (19%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWE 282
G + P + E D G GP +GDT G++G P G K PGE
Sbjct: 276 GPKGEPGEQGEKGDAGENGP------KGDT-------GEKGDPGSSAAGIKGEPGESG-- 320
Query: 283 REVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGAS 342
RP G P G I G GF + PG G ++G
Sbjct: 321 -----RPGQKGEPGLPGLP------GLPGIK-GEPGFIGPQGEPGLPG----LPGTKG-- 362
Query: 343 LLQRLHNGNASPPR--VPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARG-RGPQ 399
G A PP P AP P G+ G G +G GDRG+K A+G RGP
Sbjct: 363 -----ERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGAQGPRGPP 417
Query: 400 WKRGARGG-NLVTGTQRFKEALQDPFTLCLANVPGQP 435
++G +G ++ EALQ TL + PG P
Sbjct: 418 GQKGDQGATEIIDYNGNLHEALQRITTLTVTGPPGPP 454
Score = 37.4 bits (85), Expect = 0.046
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK----QQGMARGRGPQWKRGAR 405
G A PP P PP PP GD G G RG G G+ +QG+ GP ++G+
Sbjct: 192 GQAGPPGPPGPPGPRGPP---GDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSI 248
Query: 406 GGNLVTGTQRFKEALQDPFTLCLANVPG 433
G + G K P + +PG
Sbjct: 249 GAPGIPGMNGQKGEPGLPGAVGQNGIPG 276
Score = 33.5 bits (75), Expect = 0.66
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 357 VPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
+P P P GD G+ G +GD G++GD A +G + G G
Sbjct: 274 IPGPKGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPG 323
Score = 30.0 bits (66), Expect = 7.3
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
PPG GS GA + + NG P +P P G+ G+ G++GD G+
Sbjct: 241 PPGQKGSI-------GAPGIPGM-NGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGE 292
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G K +G G +G
Sbjct: 293 NGPKGDTGEKGDPGSSAAGIKG 314
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 52.0 bits (123), Expect = 2e-06
Identities = 67/234 (28%), Positives = 88/234 (37%), Gaps = 50/234 (21%)
Query: 201 QGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGG 260
+GPG A +G QG+ SDG D G +GP G +G++ + + G
Sbjct: 429 RGPGGAAGPKGD---------QGIAG--SDGLPG-DKGELGPSGLVGPKGESGSRGELGP 476
Query: 261 KQGGPREMDWGWKELPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGG 318
K G + +PG L Q V G G + GK ++ I GG
Sbjct: 477 KGTQGPNGTSGVQGVPGPPG-----PLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGG 531
Query: 319 F--------CVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPP------AP 364
H P A GS R G A PP P PP A
Sbjct: 532 MISEQIAQLAAHLRKPLAPGSIGRP--------------GPAGPPGPPGPPGSIGHPGAR 577
Query: 365 EPPWHCGDRGDCGD---RGDVGDRGDKQQGMARGRGPQWKRGARGGNLVTGTQR 415
PP + G G+ GD RG+ GDRGDK A GP+ +G +G V GT +
Sbjct: 578 GPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSK 631
Score = 43.1 bits (100), Expect = 8e-04
Identities = 60/209 (28%), Positives = 75/209 (35%), Gaps = 35/209 (16%)
Query: 223 GVRAPP----SDGRESLDTGSMGPGDCRGARGD--------TYAVEKEGGKQGGPREMDW 270
G R PP + G+ D G GP RG +GD T V G+ G P +
Sbjct: 250 GFRGPPGIPGAPGKAG-DRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKD-- 306
Query: 271 GWKELPGEEAWEREVALRPQSVGGGARESAPLKGKALGK-EEIALGGGGFCVHREP---P 326
G +PG + + E G L G+A K E+ G G P P
Sbjct: 307 GQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEP 366
Query: 327 GAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGD-------- 378
G G + A H G+A PP AP G +G GD
Sbjct: 367 GVPGDAGMPGERGEAG-----HRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQG 421
Query: 379 -RGDVGDRGDKQQGMARGRGPQWKRGARG 406
RGDVGDRG G A +G Q G+ G
Sbjct: 422 LRGDVGDRG--PGGAAGPKGDQGIAGSDG 448
Score = 40.0 bits (92), Expect = 0.007
Identities = 67/235 (28%), Positives = 85/235 (36%), Gaps = 55/235 (23%)
Query: 211 GRSSALLGAQCQGVRAPPSD-------GRESLDTGSMGPGDCRGARGDTYAVEKEGGKQG 263
G A GAQ G+ PP G++ +D G GP G G A GK G
Sbjct: 17 GELLAAAGAQRVGLPGPPGPPGPPGKPGQDGID-GEAGPPGLPGPPGPKGAP----GKPG 71
Query: 264 GPREMDWGWKELPGEEAWE-REVALRPQSVGGGARESAP-----LKGKAL----GKEEIA 313
P E G LPG + R+ P+ G P L GK L G+ ++
Sbjct: 72 KPGEA--GLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVS 129
Query: 314 LGGGGFCVHREPPGAHG-------------SCHRAAQSRGASLLQRLHNGNASPPRV--P 358
GG + R PPG G H GA+ LQ P + P
Sbjct: 130 GPPGGIGL-RGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQC--------PSICPP 180
Query: 359 SPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-------QQGMARGRGPQWKRGARG 406
PP P P G G G++G+VG G+K G+ G Q RG RG
Sbjct: 181 GPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRG 235
Score = 32.3 bits (72), Expect = 1.5
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARG----RGPQWKRGAR 405
G+ P PP P P GDRG+ G G G +GD + +G GP + G
Sbjct: 244 GDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMP 303
Query: 406 G 406
G
Sbjct: 304 G 304
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 218 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 274
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 275 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 310
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 311 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 366
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 367 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 426
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 469
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 488 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 547
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 548 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 607
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 608 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 656
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 657 TG--AAGLPGLHGPPGDKGNRG 676
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 391 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 450
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 498
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 499 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 546
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 547 AGSPGEKGEAGEKG 560
Score = 35.0 bits (79), Expect = 0.23
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPGPPGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 518 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 574
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 575 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 634
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 635 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 690
Query: 389 QQGMARG 395
A G
Sbjct: 691 GDQGAPG 697
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 218 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 274
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 275 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 310
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 311 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 366
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 367 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 426
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 469
Score = 38.5 bits (88), Expect = 0.021
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 38/200 (19%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 391 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 450
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 498
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPW------HCGDRGDCGDRGDVGDRG 386
+G R G+ PP PP PP H G G+ G++G+ G G
Sbjct: 499 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAG 548
Query: 387 DKQQGMARGRGPQWKRGARG 406
G+ GP G +G
Sbjct: 549 SPVPGLPGPEGPPGPPGLQG 568
Score = 33.1 bits (74), Expect = 0.86
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQ----------GMARGRGPQ 399
G PP P P P G G G++G G++GD+ G+ GP+
Sbjct: 556 GPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPK 615
Query: 400 WKRGARGGNLVTG 412
+RG++G +TG
Sbjct: 616 GERGSKGDPGMTG 628
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Score = 31.6 bits (70), Expect = 2.5
Identities = 48/177 (27%), Positives = 60/177 (33%), Gaps = 32/177 (18%)
Query: 238 GSMGPGDCRGARGDTYAVEKEG--GKQGGPR-EMDWGWKELPGEEAWEREVALRPQSVGG 294
G GP RG GD +G GK G P + + G PGE+ + E V G
Sbjct: 497 GEKGP---RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPG 553
Query: 295 GARESAP-----LKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRLHN 349
P L+G K E L G + G G ++
Sbjct: 554 LPGPEGPPGPPGLQGVPGPKGEAGLDGA-----KGEKGFQG--------------EKGDR 594
Query: 350 GNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
G P P P P P G+RG GD G G G G+ GP +G RG
Sbjct: 595 GPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTG--AAGLPGLHGPPGDKGNRG 649
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 218 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 274
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 275 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 310
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 311 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 366
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 367 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 426
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 469
Score = 38.5 bits (88), Expect = 0.021
Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 34/202 (16%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 391 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 450
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 498
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 499 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 546
Query: 393 ARGRGPQWKRGARGGNLVTGTQ 414
A G + + G +G G Q
Sbjct: 547 AGSPGEKGEAGEKGNPGAEGLQ 568
Score = 34.3 bits (77), Expect = 0.39
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 21/174 (12%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREM-DWGWKELPGEEAW 281
G PP E+ GS PG+ +G +G+T G+ G P E + G K PG E
Sbjct: 518 GKDGPPGVKGENGHPGS--PGE-KGEKGET-------GQAGSPGEKGEAGEKGNPGAEGL 567
Query: 282 EREVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGA 341
+ + ++ GA+ +G+ + + L G P G G + RG+
Sbjct: 568 QGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTP-----GPIGVPGPAGPKGE-RGS 621
Query: 342 SLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARG 395
+ G P P PP G+RG+ G +G G +GDK A G
Sbjct: 622 ----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPG 671
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 189 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 245
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 246 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 281
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 282 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 337
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 338 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 397
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 398 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 440
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 459 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 518
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 519 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 578
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 579 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 627
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 628 TG--AAGLPGLHGPPGDKGNRG 647
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 362 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 421
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 422 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 469
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 470 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 517
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 518 AGSPGEKGEAGEKG 531
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 489 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 545
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 546 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 605
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 606 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 661
Query: 389 QQGMARG 395
A G
Sbjct: 662 GDQGAPG 668
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 218 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 274
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 275 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 310
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 311 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 366
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 367 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 426
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 469
Score = 40.4 bits (93), Expect = 0.005
Identities = 49/185 (26%), Positives = 69/185 (37%), Gaps = 41/185 (22%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREM-DWGWKELPGEEAW 281
G PP E+ GS PG+ +G +G+T G+ G P E + G K PG E
Sbjct: 518 GKDGPPGVKGENGHPGS--PGE-KGEKGET-------GQAGSPGEKGEAGEKGNPGAEGL 567
Query: 282 EREVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGA 341
+ + ++ GA+ +G+ + + L PGA G
Sbjct: 568 QGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGL-----------PGASGL---------- 606
Query: 342 SLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWK 401
+G PP P P P P G+RG GD G G G G+ GP
Sbjct: 607 -------DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTG--AAGLPGLHGPPGD 657
Query: 402 RGARG 406
+G RG
Sbjct: 658 KGNRG 662
Score = 38.5 bits (88), Expect = 0.021
Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 34/202 (16%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 391 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 450
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 498
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 499 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 546
Query: 393 ARGRGPQWKRGARGGNLVTGTQ 414
A G + + G +G G Q
Sbjct: 547 AGSPGEKGEAGEKGNPGAEGLQ 568
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 218 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 274
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 275 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 310
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 311 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 366
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 367 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 426
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 469
Score = 39.3 bits (90), Expect = 0.012
Identities = 55/181 (30%), Positives = 66/181 (36%), Gaps = 28/181 (15%)
Query: 238 GSMGPGDCRGARGDTYAVEKEG--GKQGGPR-EMDWGWKELPGEEAWEREVALRPQSVGG 294
G GP RG GD +G GK G P + + G PGE+ + E V G
Sbjct: 497 GEKGP---RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPG 553
Query: 295 GARESAP-----LKGKALGKEEIALGGG----GFCVHREPPGAHGSCHRAAQSRGASLLQ 345
P L+G K E L G GF + G G GAS L
Sbjct: 554 LPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGL-------PGASGL- 605
Query: 346 RLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGAR 405
+G PP P P P P G+RG GD G G G G+ GP +G R
Sbjct: 606 ---DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTG--AAGLPGLHGPPGDKGNR 660
Query: 406 G 406
G
Sbjct: 661 G 661
Score = 38.5 bits (88), Expect = 0.021
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 38/200 (19%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 391 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 450
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 498
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPW------HCGDRGDCGDRGDVGDRG 386
+G R G+ PP PP PP H G G+ G++G+ G G
Sbjct: 499 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAG 548
Query: 387 DKQQGMARGRGPQWKRGARG 406
G+ GP G +G
Sbjct: 549 SPVPGLPGPEGPPGPPGLQG 568
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Score = 32.3 bits (72), Expect = 1.5
Identities = 45/179 (25%), Positives = 68/179 (37%), Gaps = 20/179 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWE 282
G PP E+ GS PG+ +G +G+T G+ G P G + PG +
Sbjct: 518 GKDGPPGVKGENGHPGS--PGE-KGEKGET-------GQAGSPVPGLPGPEGPPGPPGLQ 567
Query: 283 REVALRPQSVGGGARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCHRAAQS--- 338
+ ++ GA+ +G+ + + L G G PPG G +
Sbjct: 568 GVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPK 627
Query: 339 --RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARG 395
RG+ + G P P PP G+RG+ G +G G +GDK A G
Sbjct: 628 GERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPG 682
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 201 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 257
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 258 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 293
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 294 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 349
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 350 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 409
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 410 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 452
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 471 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 530
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 531 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 590
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 591 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 639
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 640 TG--AAGLPGLHGPPGDKGNRG 659
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 374 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 433
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 434 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 481
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 482 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 529
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 530 AGSPGEKGEAGEKG 543
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 501 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 557
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 558 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 617
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 618 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 673
Query: 389 QQGMARG 395
A G
Sbjct: 674 GDQGAPG 680
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 206 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 262
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 263 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 298
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 299 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 354
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 355 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 414
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 415 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 457
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 476 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 535
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 536 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 595
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 596 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 644
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 645 TG--AAGLPGLHGPPGDKGNRG 664
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 379 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 438
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 439 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 486
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 487 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 534
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 535 AGSPGEKGEAGEKG 548
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 506 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 562
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 563 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 622
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 623 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 678
Query: 389 QQGMARG 395
A G
Sbjct: 679 GDQGAPG 685
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 218 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 274
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 275 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 310
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 311 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 366
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 367 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 426
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 469
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 488 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 547
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 548 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 607
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 608 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 656
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 657 TG--AAGLPGLHGPPGDKGNRG 676
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 391 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 450
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 498
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 499 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 546
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 547 AGSPGEKGEAGEKG 560
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 518 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 574
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 575 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 634
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 635 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 690
Query: 389 QQGMARG 395
A G
Sbjct: 691 GDQGAPG 697
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
Length = 705
Score = 51.6 bits (122), Expect = 2e-06
Identities = 79/283 (27%), Positives = 105/283 (37%), Gaps = 53/283 (18%)
Query: 175 HREALLQLPLAVQE------ELLSLVQEASSGQGPGALA-SWEGRSSALLGAQCQGVRAP 227
HRE L +P A++ +LL L+ P +++G S A QG P
Sbjct: 218 HRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQ---ASIQGPPGP 274
Query: 228 PSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVAL 287
P G GP G G G G P LPG + + +
Sbjct: 275 P---------GPPGPSGPLGHPGLP-------GPMGPPG--------LPGPPGPKGDPGI 310
Query: 288 RPQSVGGGARESAPLKGK--ALGKEEIALGGGGFCVHREP--PGAHGSCHRAAQSRGASL 343
+ G R + GK A G IA+ G + EP PG G L
Sbjct: 311 QGYHGRKGERGMPGMPGKHGAKGAPGIAVAG----MKGEPGIPGTKGEKGAEGSPGLPGL 366
Query: 344 L-QRLHNGNASPP-----RVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGR 396
L Q+ G+A P PP P PP G+ G G G G GDK ++G A +
Sbjct: 367 LGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQ 426
Query: 397 GPQWKRGARG----GNLVTGTQRFKEALQDPFTLCLANVPGQP 435
GP +G++G G +V EALQ+ TL L PG P
Sbjct: 427 GPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP 469
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 391 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 450
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 498
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 499 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 546
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 547 AGSPGEKGEAGEKG 560
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Score = 30.8 bits (68), Expect = 4.3
Identities = 54/200 (27%), Positives = 69/200 (34%), Gaps = 29/200 (14%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 488 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 547
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG-------GFCV 321
PGE+ E V G P L+G K E L G G
Sbjct: 548 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 607
Query: 322 HREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSP------PPAPEPPWHCGDRGD 375
R P G G+ A + G+ P + P P PP G+RG+
Sbjct: 608 DRGPLGLPGTPGPIGVPGPAG--PKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGE 665
Query: 376 CGDRGDVGDRGDKQQGMARG 395
G +G G +GDK A G
Sbjct: 666 RGKKGSRGPKGDKGDQGAPG 685
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 51.2 bits (121), Expect = 3e-06
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 358 PSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGRGPQWKRGARG----GNLVTG 412
P PP P PP G+ G G G G GDK ++G A +GP +G++G G +V
Sbjct: 325 PGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDY 384
Query: 413 TQRFKEALQDPFTLCLANVPGQP 435
EALQ+ TL L PG P
Sbjct: 385 NGNINEALQEIRTLALMGPPGLP 407
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 426 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 485
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 486 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 545
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 546 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 594
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 595 TG--AAGLPGLHGPPGDKGNRG 614
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 329 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 388
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 389 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 436
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 437 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 484
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 485 AGSPGEKGEAGEKG 498
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 456 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 512
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 513 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 572
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 573 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 628
Query: 389 QQGMARG 395
A G
Sbjct: 629 GDQGAPG 635
Score = 29.6 bits (65), Expect = 9.6
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 327 GAHGSC----HRAAQSRGASLLQRLHNGNASPPRVPSP------PPAPEPPWHCGDRGDC 376
G G C HR QS+ + G PP P P P P P G G
Sbjct: 187 GEKGQCGEYPHRGEQSQASI------QGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP 240
Query: 377 GDRGDVGDRGDKQQGMARGR-GPQWKRGARG 406
G +GD G +G + RG G K GA+G
Sbjct: 241 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKG 271
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 51.2 bits (121), Expect = 3e-06
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 358 PSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGRGPQWKRGARG----GNLVTG 412
P PP P PP G+ G G G G GDK ++G A +GP +G++G G +V
Sbjct: 330 PGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDY 389
Query: 413 TQRFKEALQDPFTLCLANVPGQP 435
EALQ+ TL L PG P
Sbjct: 390 NGNINEALQEIRTLALMGPPGLP 412
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 431 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 490
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 491 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 550
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 551 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 599
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 600 TG--AAGLPGLHGPPGDKGNRG 619
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 334 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 393
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 394 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 441
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 442 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 489
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 490 AGSPGEKGEAGEKG 503
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 461 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 517
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 518 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 577
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 578 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 633
Query: 389 QQGMARG 395
A G
Sbjct: 634 GDQGAPG 640
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 51.2 bits (121), Expect = 3e-06
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 358 PSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGRGPQWKRGARG----GNLVTG 412
P PP P PP G+ G G G G GDK ++G A +GP +G++G G +V
Sbjct: 334 PGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDY 393
Query: 413 TQRFKEALQDPFTLCLANVPGQP 435
EALQ+ TL L PG P
Sbjct: 394 NGNINEALQEIRTLALMGPPGLP 416
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 435 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 494
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 495 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 554
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 555 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 603
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 604 TG--AAGLPGLHGPPGDKGNRG 623
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 338 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 397
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 398 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 445
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 446 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 493
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 494 AGSPGEKGEAGEKG 507
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 465 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 521
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 522 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 581
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 582 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 637
Query: 389 QQGMARG 395
A G
Sbjct: 638 GDQGAPG 644
Score = 29.6 bits (65), Expect = 9.6
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 327 GAHGSC----HRAAQSRGASLLQRLHNGNASPPRVPSP------PPAPEPPWHCGDRGDC 376
G G C HR QS+ + G PP P P P P P G G
Sbjct: 196 GEKGQCGEYPHRGEQSQASI------QGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP 249
Query: 377 GDRGDVGDRGDKQQGMARGR-GPQWKRGARG 406
G +GD G +G + RG G K GA+G
Sbjct: 250 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKG 280
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 51.2 bits (121), Expect = 3e-06
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 358 PSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGRGPQWKRGARG----GNLVTG 412
P PP P PP G+ G G G G GDK ++G A +GP +G++G G +V
Sbjct: 368 PGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDY 427
Query: 413 TQRFKEALQDPFTLCLANVPGQP 435
EALQ+ TL L PG P
Sbjct: 428 NGNINEALQEIRTLALMGPPGLP 450
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 372 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 431
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 432 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 479
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 480 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 527
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 528 AGSPGEKGEAGEKG 541
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Score = 30.8 bits (68), Expect = 4.3
Identities = 54/200 (27%), Positives = 69/200 (34%), Gaps = 29/200 (14%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 469 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 528
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG-------GFCV 321
PGE+ E V G P L+G K E L G G
Sbjct: 529 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 588
Query: 322 HREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSP------PPAPEPPWHCGDRGD 375
R P G G+ A + G+ P + P P PP G+RG+
Sbjct: 589 DRGPLGLPGTPGPIGVPGPAG--PKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGE 646
Query: 376 CGDRGDVGDRGDKQQGMARG 395
G +G G +GDK A G
Sbjct: 647 RGKKGSRGPKGDKGDQGAPG 666
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 51.2 bits (121), Expect = 3e-06
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 358 PSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK-QQGMARGRGPQWKRGARG----GNLVTG 412
P PP P PP G+ G G G G GDK ++G A +GP +G++G G +V
Sbjct: 346 PGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDY 405
Query: 413 TQRFKEALQDPFTLCLANVPGQP 435
EALQ+ TL L PG P
Sbjct: 406 NGNINEALQEIRTLALMGPPGLP 428
Score = 41.2 bits (95), Expect = 0.003
Identities = 60/202 (29%), Positives = 72/202 (35%), Gaps = 31/202 (15%)
Query: 223 GVRAPPS-DGRESL--DTGSMGPGDCRGARGDTY--AVEKEGGKQGGPREM----DWGWK 273
G+ PP DG + G MGP +G G V+ E G G P E + G
Sbjct: 447 GLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQA 506
Query: 274 ELPGEEAWEREVALRPQSVGGGARESAP-----LKGKALGKEEIALGGG----GFCVHRE 324
PGE+ E V G P L+G K E L G GF +
Sbjct: 507 GSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKG 566
Query: 325 PPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGD 384
G G GAS L +G PP P P P P G+RG GD G G
Sbjct: 567 DRGPLGL-------PGASGL----DGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGP 615
Query: 385 RGDKQQGMARGRGPQWKRGARG 406
G G+ GP +G RG
Sbjct: 616 TG--AAGLPGLHGPPGDKGNRG 635
Score = 37.4 bits (85), Expect = 0.046
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 34/194 (17%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--------GKQGGPREMDWGWKE 274
G+ PP E+ G +GP G +G+ A ++G G+ G +D+
Sbjct: 350 GLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI 409
Query: 275 LPGEEAWEREVALRPQSVGG--GARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSC 332
+ + P + G G + + G+ K EI L G PPG G
Sbjct: 410 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQ---KGEIGLPG--------PPGHDGE- 457
Query: 333 HRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGM 392
+G R G+ PP PP PP G+ G G G+ G++G + G
Sbjct: 458 ------KGP----RGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG--ETGQ 505
Query: 393 ARGRGPQWKRGARG 406
A G + + G +G
Sbjct: 506 AGSPGEKGEAGEKG 519
Score = 34.3 bits (77), Expect = 0.39
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 21/187 (11%)
Query: 223 GVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEG--GKQGGPREMDWGWKELPGEEA 280
G PP E+ GS G +G G + ++G G++G P G LPG E
Sbjct: 477 GKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPG---LPGPEG 533
Query: 281 WEREVALR----PQSVGG--GARESAPLKGKALGKEEIAL-GGGGFCVHREPPGAHGSCH 333
L+ P+ G GA+ +G+ + + L G G PPG G
Sbjct: 534 PPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIG 593
Query: 334 RAAQS-----RGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDK 388
+ RG+ + G P P PP G+RG+ G +G G +GDK
Sbjct: 594 VPGPAGPKGERGS----KGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDK 649
Query: 389 QQGMARG 395
A G
Sbjct: 650 GDQGAPG 656
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 354 PPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARG 406
PP P P P GD+G G G VG GD + RGP + G RG
Sbjct: 120 PPAFQGPTGRPGLP---GDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Score = 29.6 bits (65), Expect = 9.6
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 327 GAHGSC----HRAAQSRGASLLQRLHNGNASPPRVPSP------PPAPEPPWHCGDRGDC 376
G G C HR QS+ + G PP P P P P P G G
Sbjct: 208 GEKGQCGEYPHRGEQSQASI------QGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPP 261
Query: 377 GDRGDVGDRGDKQQGMARGR-GPQWKRGARG 406
G +GD G +G + RG G K GA+G
Sbjct: 262 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKG 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,464,017
Number of Sequences: 37866
Number of extensions: 1732030
Number of successful extensions: 14895
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 10308
Number of HSP's gapped (non-prelim): 2268
length of query: 678
length of database: 18,247,518
effective HSP length: 109
effective length of query: 569
effective length of database: 14,120,124
effective search space: 8034350556
effective search space used: 8034350556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.